F199890
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 147 | 100 | 294 | 179 |
Family's Representative Sequence
| Representative Sequence | 3300005618|Ga0068864_101037185|Ga0068864_1010371851 |
| Length | 201 |
| Sequence | MAGPTLRLNAIMANNCGDAHEWFRTVVDRFEGPLVRYAKSITGDTERARDVVQEAFLRLHREFTLSASSNGQAMNGRAAPSDRQHRPENVQAWLYTVCRRQALDVLRKETRMKTLDHAQAAVCECPLPTQVSAVERQESQSQLLRLLADLPANQQEVVRLKFQDGLSYRDIAEITGLTSSNVGYLLHVALKRLREQLAVSD |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 2 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 3 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 4 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 5 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 7 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Metagenome | Rhizosphere |
| 9 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 10 | 3300005547 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 12 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 13 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 14 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 15 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 16 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 17 | 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Metagenome | Rhizosphere |
| 18 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 19 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 20 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 21 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 22 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 23 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 24 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 25 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 26 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 27 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 28 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 29 | 3300028563 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG | Metagenome | Rhizosphere |
| 30 | 3300028573 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG | Metagenome | Rhizosphere |
| 31 | 3300028577 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG | Metagenome | Rhizosphere |
| 32 | 3300028653 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG | Metagenome | Rhizosphere |
| 33 | 3300028654 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG | Metagenome | Rhizosphere |
| 34 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 35 | 3300031235 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG | Metagenome | Rhizosphere |
| 36 | 3300031238 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG | Metagenome | Rhizosphere |
| 37 | 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Metagenome | Rhizosphere |
| 38 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 39 | 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Metagenome | Rhizosphere |
| 40 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 41 | 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Metagenome | Rhizosphere |
| 42 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 43 | 3300031507 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM | Metagenome | Unclassified |
| 44 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 45 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 46 | 3300031616 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM | Metagenome | Unclassified |
| 47 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 48 | 3300031712 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG | Metagenome | Rhizosphere |
| 49 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 50 | 3300031911 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 | Metagenome | Rhizosphere |
| 51 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 52 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 53 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 54 | 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Metagenome | Rhizosphere |
| 55 | 3300033179 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM | Metagenome | Unclassified |
| 56 | 3300035091 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 | Metagenome | Rhizosphere |
| 57 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 58 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 59 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 60 | 3300041452 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG | Metagenome | Rhizoplane |
| 61 | 3300041498 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG | Metagenome | Unclassified |
| 62 | 3300041512 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG | Metagenome | Unclassified |
| 63 | 3300042156 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 | Metagenome | Rhizosphere |
| 64 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 65 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 66 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 67 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 68 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 69 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 70 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 71 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 72 | 3300046689 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere | Metagenome | Rhizosphere |
| 73 | 3300049568 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 74 | 3300049569 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 75 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 76 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 77 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 78 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 79 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 80 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 81 | 3300049578 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 82 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 83 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 84 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 85 | 3300049582 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 86 | 3300049584 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 | Metagenome | Rhizosphere |
| 87 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 88 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 89 | 3300049675 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control | Metagenome | Rhizosphere |
| 90 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 91 | 3300049744 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 | Metagenome | Rhizosphere |
| 92 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 93 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 94 | 3300049824 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 95 | 3300053077 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere | Metagenome | Rhizosphere |
| 96 | 3300053139 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere | Metagenome | Endosphere |
| 97 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 98 | 3300053158 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere | Metagenome | Endosphere |
| 99 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 100 | 2786546940 | Opitutaceae bacterium EW11 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 99.32 |
| Metatranscriptomes | 0 |
| Isolates | 0.68 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 2.04 |
| Nodule | 0 |
| Rhizoplane | 0.68 |
| Rhizosphere | 90.48 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 15.65 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0068864_101037185 | 3300005618 | Bacteria | 814 |
| 2 | rootH2_10023934 | 3300003320 | Bacteria | 11461 |
| 3 | rootL2_10011693 | 3300003322 | Bacteria | 5998 |
| 4 | rootH1_10048568 | 3300003323 | Bacteria | 13661 |
| 5 | Ga0070658_10014752 | 3300005327 | Bacteria | 6265 |
| 6 | Ga0070683_100189814 | 3300005329 | Bacteria | 1951 |
| 7 | Ga0070670_100342628 | 3300005331 | Unclassified | 1312 |
| 8 | Ga0070689_101132802 | 3300005340 | Unclassified | 700 |
| 9 | Ga0070679_100431442 | 3300005530 | Bacteria | 1263 |
| 10 | Ga0070693_100493798 | 3300005547 | Bacteria | 867 |
| 11 | Ga0068855_100076445 | 3300005563 | Bacteria | 3886 |
| 12 | Ga0068857_100024093 | 3300005577 | Bacteria | 5358 |
| 13 | Ga0068856_100061894 | 3300005614 | Bacteria | 3697 |
| 14 | Ga0068858_100927142 | 3300005842 | Bacteria | 852 |
| 15 | Ga0068858_101084012 | 3300005842 | Bacteria | 786 |
| 16 | Ga0081455_10524591 | 3300005937 | Bacteria | 789 |
| 17 | Ga0070717_10000012 | 3300006028 | Bacteria | 230311 |
| 18 | Ga0068871_100838982 | 3300006358 | Unclassified | 849 |
| 19 | Ga0105238_10957598 | 3300009551 | Bacteria | 876 |
| 20 | Ga0157372_12301638 | 3300013307 | Bacteria | 619 |
| 21 | Ga0157375_12267081 | 3300013308 | Unclassified | 647 |
| 22 | Ga0207707_10678068 | 3300025912 | Bacteria | 867 |
| 23 | Ga0207652_10760583 | 3300025921 | Bacteria | 862 |
| 24 | Ga0207650_10399110 | 3300025925 | Unclassified | 1138 |
| 25 | Ga0207667_10293195 | 3300025949 | Bacteria | 1662 |
| 26 | Ga0207702_10000121 | 3300026078 | Bacteria | 91718 |
| 27 | Ga0207641_10937521 | 3300026088 | Bacteria | 861 |
| 28 | Ga0207674_10035625 | 3300026116 | Bacteria | 5194 |
| 29 | Ga0268266_10447995 | 3300028379 | Bacteria | 1227 |
| 30 | Ga0265319_1000087 | 3300028563 | Bacteria | 71928 |
| 31 | Ga0265319_1033080 | 3300028563 | Bacteria | 1788 |
| 32 | Ga0265319_1040903 | 3300028563 | Unclassified | 1566 |
| 33 | Ga0265334_10002620 | 3300028573 | Bacteria | 8376 |
| 34 | Ga0265334_10034270 | 3300028573 | Bacteria | 2015 |
| 35 | Ga0265318_10000379 | 3300028577 | Bacteria | 34693 |
| 36 | Ga0265318_10196558 | 3300028577 | Bacteria | 737 |
| 37 | Ga0265323_10000003 | 3300028653 | Bacteria | 200487 |
| 38 | Ga0265323_10002785 | 3300028653 | Bacteria | 7870 |
| 39 | Ga0265323_10015957 | 3300028653 | Bacteria | 2941 |
| 40 | Ga0265323_10018190 | 3300028653 | Bacteria | 2722 |
| 41 | Ga0265322_10005230 | 3300028654 | Bacteria | 3838 |
| 42 | Ga0265322_10093547 | 3300028654 | Bacteria | 854 |
| 43 | Ga0265338_10008591 | 3300028800 | Bacteria | 12357 |
| 44 | Ga0265330_10073930 | 3300031235 | Bacteria | 1473 |
| 45 | Ga0265330_10084348 | 3300031235 | Bacteria | 1367 |
| 46 | Ga0265332_10006699 | 3300031238 | Bacteria | 5218 |
| 47 | Ga0265325_10000137 | 3300031241 | Bacteria | 50598 |
| 48 | Ga0265339_10000125 | 3300031249 | Bacteria | 64084 |
| 49 | Ga0265339_10092337 | 3300031249 | Bacteria | 1585 |
| 50 | Ga0265331_10000227 | 3300031250 | Bacteria | 67829 |
| 51 | Ga0265331_10006576 | 3300031250 | Bacteria | 6851 |
| 52 | Ga0265327_10000305 | 3300031251 | Bacteria | 95294 |
| 53 | Ga0265327_10001330 | 3300031251 | Bacteria | 32077 |
| 54 | Ga0265316_10001569 | 3300031344 | Bacteria | 24424 |
| 55 | Ga0265316_10031080 | 3300031344 | Bacteria | 4370 |
| 56 | Ga0265316_10041729 | 3300031344 | Unclassified | 3670 |
| 57 | Ga0265316_10044130 | 3300031344 | Bacteria | 3548 |
| 58 | Ga0265316_10046703 | 3300031344 | Bacteria | 3429 |
| 59 | Ga0265316_10068102 | 3300031344 | Bacteria | 2751 |
| 60 | Ga0307513_10317640 | 3300031456 | Unclassified | 1317 |
| 61 | Ga0307509_10593636 | 3300031507 | Bacteria | 781 |
| 62 | Ga0307408_100000003 | 3300031548 | Bacteria | 618438 |
| 63 | Ga0265313_10000191 | 3300031595 | Bacteria | 65446 |
| 64 | Ga0307508_10000026 | 3300031616 | Bacteria | 171622 |
| 65 | Ga0265314_10000218 | 3300031711 | Bacteria | 85224 |
| 66 | Ga0265314_10001852 | 3300031711 | Bacteria | 22676 |
| 67 | Ga0265314_10124950 | 3300031711 | Bacteria | 1613 |
| 68 | Ga0265342_10011650 | 3300031712 | Bacteria | 6000 |
| 69 | Ga0265342_10036390 | 3300031712 | Unclassified | 3008 |
| 70 | Ga0265342_10053632 | 3300031712 | Bacteria | 2399 |
| 71 | Ga0265342_10058282 | 3300031712 | Bacteria | 2283 |
| 72 | Ga0307410_10000009 | 3300031852 | Bacteria | 91471 |
| 73 | Ga0307412_10351644 | 3300031911 | Bacteria | 1183 |
| 74 | Ga0307409_100000078 | 3300031995 | Bacteria | 34924 |
| 75 | Ga0307416_100000070 | 3300032002 | Bacteria | 83644 |
| 76 | Ga0307416_100045238 | 3300032002 | Bacteria | 3464 |
| 77 | Ga0307414_10750548 | 3300032004 | Bacteria | 887 |
| 78 | Ga0307411_10822285 | 3300032005 | Bacteria | 820 |
| 79 | Ga0307507_10344282 | 3300033179 | Bacteria | 881 |
| 80 | Ga0373951_0018570 | 3300035091 | Bacteria | 1580 |
| 81 | Ga0373937_1252034 | 3300036401 | Unclassified | 690 |
| 82 | Ga0373925_0450931 | 3300037068 | Bacteria | 1053 |
| 83 | Ga0395905_0279448 | 3300037471 | Unclassified | 1556 |
| 84 | Ga0451793_1506479 | 3300041452 | Bacteria | 1013 |
| 85 | Ga0451841_0224918 | 3300041498 | Bacteria | 1033 |
| 86 | Ga0451853_2325928 | 3300041512 | Bacteria | 810 |
| 87 | Ga0439446_0091889 | 3300042156 | Bacteria | 951 |
| 88 | Ga0451577_0000059 | 3300042876 | Bacteria | 271425 |
| 89 | Ga0451577_0040793 | 3300042876 | Bacteria | 4167 |
| 90 | Ga0451577_0131737 | 3300042876 | Bacteria | 2243 |
| 91 | Ga0451577_0183306 | 3300042876 | Bacteria | 1888 |
| 92 | Ga0451577_0467188 | 3300042876 | Unclassified | 1146 |
| 93 | Ga0451577_1370496 | 3300042876 | Unclassified | 628 |
| 94 | Ga0466966_0028509 | 3300044684 | Bacteria | 3636 |
| 95 | Ga0466961_0630970 | 3300044693 | Bacteria | 643 |
| 96 | Ga0453684_0002772 | 3300044712 | Bacteria | 41469 |
| 97 | Ga0453684_0036283 | 3300044712 | Bacteria | 6795 |
| 98 | Ga0453684_0058639 | 3300044712 | Unclassified | 4971 |
| 99 | Ga0453684_0095788 | 3300044712 | Bacteria | 3647 |
| 100 | Ga0453684_0925802 | 3300044712 | Bacteria | 932 |
| 101 | Ga0453684_1817314 | 3300044712 | Bacteria | 619 |
| 102 | Ga0466957_0237623 | 3300044842 | Unclassified | 1208 |
| 103 | Ga0466959_0068031 | 3300045049 | Bacteria | 2581 |
| 104 | Ga0451576_0000075 | 3300045051 | Bacteria | 247981 |
| 105 | Ga0451576_0000255 | 3300045051 | Bacteria | 131310 |
| 106 | Ga0451576_0000286 | 3300045051 | Bacteria | 123870 |
| 107 | Ga0451576_0083913 | 3300045051 | Bacteria | 3314 |
| 108 | Ga0451576_0187330 | 3300045051 | Bacteria | 2161 |
| 109 | Ga0466967_0074103 | 3300045976 | Bacteria | 3056 |
| 110 | Ga0495613_0189046 | 3300046689 | Bacteria | 1456 |
| 111 | Ga0501031_0002210 | 3300049568 | Bacteria | 12298 |
| 112 | Ga0501032_0000671 | 3300049569 | Bacteria | 27788 |
| 113 | Ga0501032_0001557 | 3300049569 | Bacteria | 18302 |
| 114 | Ga0501033_0002630 | 3300049570 | Bacteria | 15105 |
| 115 | Ga0501034_0054672 | 3300049571 | Bacteria | 4019 |
| 116 | Ga0501036_0535574 | 3300049572 | Unclassified | 973 |
| 117 | Ga0501037_0083799 | 3300049573 | Bacteria | 2309 |
| 118 | Ga0501038_0933353 | 3300049574 | Bacteria | 639 |
| 119 | Ga0501039_0009535 | 3300049575 | Bacteria | 7399 |
| 120 | Ga0501042_0026168 | 3300049578 | Bacteria | 4101 |
| 121 | Ga0501043_0007217 | 3300049579 | Bacteria | 8830 |
| 122 | Ga0501043_0245625 | 3300049579 | Unclassified | 1379 |
| 123 | Ga0501046_0011911 | 3300049580 | Bacteria | 7418 |
| 124 | Ga0501046_0017055 | 3300049580 | Bacteria | 6070 |
| 125 | Ga0501046_0210752 | 3300049580 | Unclassified | 1442 |
| 126 | Ga0501047_0060147 | 3300049581 | Bacteria | 3666 |
| 127 | Ga0501047_0222674 | 3300049581 | Unclassified | 1742 |
| 128 | Ga0501048_0012408 | 3300049582 | Bacteria | 6338 |
| 129 | Ga0501068_0046266 | 3300049584 | Bacteria | 2624 |
| 130 | Ga0501070_0020353 | 3300049586 | Bacteria | 5566 |
| 131 | Ga0501070_0291884 | 3300049586 | Bacteria | 1329 |
| 132 | Ga0501070_0502914 | 3300049586 | Unclassified | 974 |
| 133 | Ga0501073_0147330 | 3300049589 | Bacteria | 1631 |
| 134 | Ga0501243_005128 | 3300049675 | Bacteria | 1969 |
| 135 | Ga0501080_0814182 | 3300049742 | Unclassified | 818 |
| 136 | Ga0501083_0075818 | 3300049744 | Bacteria | 2233 |
| 137 | Ga0501035_0000333 | 3300049822 | Bacteria | 54985 |
| 138 | Ga0501035_0015332 | 3300049822 | Bacteria | 7074 |
| 139 | Ga0501044_0000293 | 3300049823 | Bacteria | 63533 |
| 140 | Ga0501044_0008936 | 3300049823 | Bacteria | 10951 |
| 141 | Ga0501045_0058053 | 3300049824 | Bacteria | 2833 |
| 142 | Ga0495601_0132369 | 3300053077 | Unclassified | 1625 |
| 143 | Ga0500568_0085906 | 3300053139 | Bacteria | 1190 |
| 144 | Ga0500622_0043271 | 3300053156 | Bacteria | 2336 |
| 145 | Ga0500627_0235890 | 3300053158 | Bacteria | 813 |
| 146 | Ga0501082_0512844 | 3300060353 | Unclassified | 1048 |
| 147 | 2788433017 | 2786546940 | Bacteria | 6396474 |
| 148 | Ga0068864_101037185 | |||
| 149 | rootH2_10023934 | |||
| 150 | rootL2_10011693 | |||
| 151 | rootH1_10048568 | |||
| 152 | Ga0070658_10014752 | |||
| 153 | Ga0070683_100189814 | |||
| 154 | Ga0070670_100342628 | |||
| 155 | Ga0070689_101132802 | |||
| 156 | Ga0070679_100431442 | |||
| 157 | Ga0070693_100493798 | |||
| 158 | Ga0068855_100076445 | |||
| 159 | Ga0068857_100024093 | |||
| 160 | Ga0068856_100061894 | |||
| 161 | Ga0068858_100927142 | |||
| 162 | Ga0068858_101084012 | |||
| 163 | Ga0081455_10524591 | |||
| 164 | Ga0070717_10000012 | |||
| 165 | Ga0068871_100838982 | |||
| 166 | Ga0105238_10957598 | |||
| 167 | Ga0157372_12301638 | |||
| 168 | Ga0157375_12267081 | |||
| 169 | Ga0207707_10678068 | |||
| 170 | Ga0207652_10760583 | |||
| 171 | Ga0207650_10399110 | |||
| 172 | Ga0207667_10293195 | |||
| 173 | Ga0207702_10000121 | |||
| 174 | Ga0207641_10937521 | |||
| 175 | Ga0207674_10035625 | |||
| 176 | Ga0268266_10447995 | |||
| 177 | Ga0265319_1000087 | |||
| 178 | Ga0265319_1033080 | |||
| 179 | Ga0265319_1040903 | |||
| 180 | Ga0265334_10002620 | |||
| 181 | Ga0265334_10034270 | |||
| 182 | Ga0265318_10000379 | |||
| 183 | Ga0265318_10196558 | |||
| 184 | Ga0265323_10000003 | |||
| 185 | Ga0265323_10002785 | |||
| 186 | Ga0265323_10015957 | |||
| 187 | Ga0265323_10018190 | |||
| 188 | Ga0265322_10005230 | |||
| 189 | Ga0265322_10093547 | |||
| 190 | Ga0265338_10008591 | |||
| 191 | Ga0265330_10073930 | |||
| 192 | Ga0265330_10084348 | |||
| 193 | Ga0265332_10006699 | |||
| 194 | Ga0265325_10000137 | |||
| 195 | Ga0265339_10000125 | |||
| 196 | Ga0265339_10092337 | |||
| 197 | Ga0265331_10000227 | |||
| 198 | Ga0265331_10006576 | |||
| 199 | Ga0265327_10000305 | |||
| 200 | Ga0265327_10001330 | |||
| 201 | Ga0265316_10001569 | |||
| 202 | Ga0265316_10031080 | |||
| 203 | Ga0265316_10041729 | |||
| 204 | Ga0265316_10044130 | |||
| 205 | Ga0265316_10046703 | |||
| 206 | Ga0265316_10068102 | |||
| 207 | Ga0307513_10317640 | |||
| 208 | Ga0307509_10593636 | |||
| 209 | Ga0307408_100000003 | |||
| 210 | Ga0265313_10000191 | |||
| 211 | Ga0307508_10000026 | |||
| 212 | Ga0265314_10000218 | |||
| 213 | Ga0265314_10001852 | |||
| 214 | Ga0265314_10124950 | |||
| 215 | Ga0265342_10011650 | |||
| 216 | Ga0265342_10036390 | |||
| 217 | Ga0265342_10053632 | |||
| 218 | Ga0265342_10058282 | |||
| 219 | Ga0307410_10000009 | |||
| 220 | Ga0307412_10351644 | |||
| 221 | Ga0307409_100000078 | |||
| 222 | Ga0307416_100000070 | |||
| 223 | Ga0307416_100045238 | |||
| 224 | Ga0307414_10750548 | |||
| 225 | Ga0307411_10822285 | |||
| 226 | Ga0307507_10344282 | |||
| 227 | Ga0373951_0018570 | |||
| 228 | Ga0373937_1252034 | |||
| 229 | Ga0373925_0450931 | |||
| 230 | Ga0395905_0279448 | |||
| 231 | Ga0451793_1506479 | |||
| 232 | Ga0451841_0224918 | |||
| 233 | Ga0451853_2325928 | |||
| 234 | Ga0439446_0091889 | |||
| 235 | Ga0451577_0000059 | |||
| 236 | Ga0451577_0040793 | |||
| 237 | Ga0451577_0131737 | |||
| 238 | Ga0451577_0183306 | |||
| 239 | Ga0451577_0467188 | |||
| 240 | Ga0451577_1370496 | |||
| 241 | Ga0466966_0028509 | |||
| 242 | Ga0466961_0630970 | |||
| 243 | Ga0453684_0002772 | |||
| 244 | Ga0453684_0036283 | |||
| 245 | Ga0453684_0058639 | |||
| 246 | Ga0453684_0095788 | |||
| 247 | Ga0453684_0925802 | |||
| 248 | Ga0453684_1817314 | |||
| 249 | Ga0466957_0237623 | |||
| 250 | Ga0466959_0068031 | |||
| 251 | Ga0451576_0000075 | |||
| 252 | Ga0451576_0000255 | |||
| 253 | Ga0451576_0000286 | |||
| 254 | Ga0451576_0083913 | |||
| 255 | Ga0451576_0187330 | |||
| 256 | Ga0466967_0074103 | |||
| 257 | Ga0495613_0189046 | |||
| 258 | Ga0501031_0002210 | |||
| 259 | Ga0501032_0000671 | |||
| 260 | Ga0501032_0001557 | |||
| 261 | Ga0501033_0002630 | |||
| 262 | Ga0501034_0054672 | |||
| 263 | Ga0501036_0535574 | |||
| 264 | Ga0501037_0083799 | |||
| 265 | Ga0501038_0933353 | |||
| 266 | Ga0501039_0009535 | |||
| 267 | Ga0501042_0026168 | |||
| 268 | Ga0501043_0007217 | |||
| 269 | Ga0501043_0245625 | |||
| 270 | Ga0501046_0011911 | |||
| 271 | Ga0501046_0017055 | |||
| 272 | Ga0501046_0210752 | |||
| 273 | Ga0501047_0060147 | |||
| 274 | Ga0501047_0222674 | |||
| 275 | Ga0501048_0012408 | |||
| 276 | Ga0501068_0046266 | |||
| 277 | Ga0501070_0020353 | |||
| 278 | Ga0501070_0291884 | |||
| 279 | Ga0501070_0502914 | |||
| 280 | Ga0501073_0147330 | |||
| 281 | Ga0501243_005128 | |||
| 282 | Ga0501080_0814182 | |||
| 283 | Ga0501083_0075818 | |||
| 284 | Ga0501035_0000333 | |||
| 285 | Ga0501035_0015332 | |||
| 286 | Ga0501044_0000293 | |||
| 287 | Ga0501044_0008936 | |||
| 288 | Ga0501045_0058053 | |||
| 289 | Ga0495601_0132369 | |||
| 290 | Ga0500568_0085906 | |||
| 291 | Ga0500622_0043271 | |||
| 292 | Ga0500627_0235890 | |||
| 293 | Ga0501082_0512844 | |||
| 294 | 2788433017 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 6eo3-assembly1.cif.gz_A | conformational dynamism for dna interaction in salmonella typhimurium rcsb response regulator. s207c p212121 | 0.9745 | 133 | 176 |
| 6eo2-assembly1.cif.gz_A | conformational dynamism for dna interaction in salmonella typhimurium rcsb response regulator. s207c crossed | 0.9692 | 133 | 176 |
| 4go1-assembly1.cif.gz_B-2 | crystal structure of full length transcription repressor lsrr from e. coli. | 0.9642 | 137 | 174 |
| 8hnp-assembly1.cif.gz_B | archaeal transcription factor mutant | 0.964 | 133 | 179 |
| 5o8y-assembly1.cif.gz_D | conformational dynamism for dna interaction in salmonella typhimurium rcsb response regulator. | 0.9594 | 133 | 176 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 3vepH00 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9697 | 128 | 182 | 1.10.10.10 |
| 3vepE00 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9662 | 128 | 183 | 1.10.10.10 |
| 4go1B01 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9642 | 137 | 174 | 1.10.10.10 |
| 3kloC02 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9633 | 129 | 172 | 1.10.10.10 |
| 1or7A02 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9611 | 119 | 178 | 1.10.10.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A3D0M1N4-F1-model_v4 | RNA polymerase subunit sigma-24 | 0.6361 | 20 | 183 |
GO:0003677
GO:0005737 GO:0006352 GO:0016987 |
| AF-A0A7Z0F5E6-F1-model_v4 | deleted | 0.6252 | 1 | 178 |
|
| AF-A0A7Z0F5E6-F1-model_v4 | deleted | 0.5806 | 1 | 178 |
|
| AF-A0A3D0M1N4-F1-model_v4 | RNA polymerase subunit sigma-24 | 0.5738 | 20 | 183 |
GO:0003677
GO:0005737 GO:0006352 GO:0016987 |
| AF-J2Q2P1-F1-model_v4 | DNA-directed RNA polymerase specialized sigma subunit, sigma24 | 0.5645 | 1 | 185 |
GO:0000428
GO:0006352 GO:0016987 |