F200358

General Info

Members Datasets Scaffolds Average Seq Length
147 97 140 206

Family's Representative Sequence

Representative Sequence 3300013105|Ga0157369_10154235|Ga0157369_101542352
Length 236
Sequence MTGKTANISLEALGDSPQLNVDIKRFNSSGLPLVEAFYTLQGEGFHQGKAAYFIRLAGCDVGCFWCDVKESWQESAHPVIEIEEIIREAKQSTINTQQSMVNGGPIIVITGGEPLLHDLDELTRQLQVQHFKTHIETSGSSPLSGSWDWICLSPKKFKKPLQEVLKAANELKVIVYNKSDFKWAEENAALVSSGCKLYLQPEWSKSAEITPLIIEYIKANPQWQLSLQVHKYINIP

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2839989709 Pontibacter arcticus 2b14 Isolate Unclassified
3 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
4 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
5 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
6 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
7 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
8 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
9 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
10 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
11 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
12 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
13 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
14 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
15 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
16 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
17 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
18 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
19 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
20 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
21 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
22 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
23 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
24 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
25 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
26 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
27 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
28 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
29 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
30 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
31 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
32 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
33 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
34 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
39 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
40 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
44 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
45 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
48 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
49 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
50 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
71 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
74 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
75 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
76 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
77 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
78 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
79 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
80 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
81 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
82 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
89 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
90 3300049683 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_B_3_control Metagenome Rhizosphere
91 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
92 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
93 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
95 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
96 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
97 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.24
Metatranscriptomes 0
Isolates 4.76

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.04
Nodule 0
Rhizoplane 0
Rhizosphere 88.44
Stem 0
Stem Tuber 0
Unclassified 9.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2166134 2162886007 Bacteria 1131
2 JGI25154J39366_1000004 3300002738 Bacteria 346460
3 JGI25406J46586_10003120 3300003203 Bacteria 7785
4 rootH2_10028622 3300003320 Bacteria 1863
5 Ga0065704_10114772 3300005289 Bacteria 1873
6 Ga0065704_10159257 3300005289 Bacteria 1367
7 Ga0065712_10316766 3300005290 Bacteria 835
8 Ga0065715_10036229 3300005293 Bacteria 935
9 Ga0070658_10000223 3300005327 Bacteria 50518
10 Ga0070658_10051671 3300005327 Bacteria 3331
11 Ga0070683_100150475 3300005329 Unclassified 2206
12 Ga0070690_100013444 3300005330 Bacteria 4837
13 Ga0070670_100127034 3300005331 Bacteria 2201
14 Ga0070670_100255379 3300005331 Bacteria 1527
15 Ga0068869_100069280 3300005334 Bacteria 2608
16 Ga0070666_10032016 3300005335 Bacteria 3473
17 Ga0070680_100075285 3300005336 Bacteria 2779
18 Ga0070661_100027063 3300005344 Bacteria 4128
19 Ga0070667_100205621 3300005367 Unclassified 1748
20 Ga0070662_100059814 3300005457 Bacteria 2776
21 Ga0070679_100060265 3300005530 Bacteria 3782
22 Ga0068853_100140939 3300005539 Bacteria 2164
23 Ga0068853_100658800 3300005539 Bacteria 997
24 Ga0070693_100036433 3300005547 Bacteria 2735
25 Ga0068855_100147568 3300005563 Bacteria 2676
26 Ga0070664_100006721 3300005564 Bacteria 9270
27 Ga0070664_100012225 3300005564 Bacteria 6976
28 Ga0070664_100094975 3300005564 Bacteria 2586
29 Ga0070664_100167760 3300005564 Bacteria 1946
30 Ga0068857_100186783 3300005577 Bacteria 1887
31 Ga0068854_100139579 3300005578 Bacteria 1858
32 Ga0068854_100421921 3300005578 Unclassified 1108
33 Ga0068856_100020043 3300005614 Bacteria 6492
34 Ga0068852_100006525 3300005616 Bacteria 8437
35 Ga0068852_100021879 3300005616 Bacteria 5116
36 Ga0068852_100414916 3300005616 Bacteria 1327
37 Ga0068852_100861973 3300005616 Bacteria 922
38 Ga0068871_100275826 3300006358 Bacteria 1470
39 Ga0105240_10411919 3300009093 Unclassified 1520
40 Ga0114129_10110712 3300009147 Bacteria 3790
41 Ga0105237_10372817 3300009545 Bacteria 1432
42 Ga0105249_10251475 3300009553 Bacteria 1752
43 Ga0157373_10025349 3300013100 Bacteria 4290
44 Ga0157373_10113936 3300013100 Bacteria 1900
45 Ga0157371_10005569 3300013102 Bacteria 10590
46 Ga0157371_10037484 3300013102 Bacteria 3469
47 Ga0157370_10039481 3300013104 Unclassified 4562
48 Ga0157370_10104867 3300013104 Bacteria 2646
49 Ga0157369_10020928 3300013105 Bacteria 7313
50 Ga0157369_10154235 3300013105 Bacteria 2427
51 Ga0157374_10068496 3300013296 Bacteria 3339
52 Ga0157374_10168143 3300013296 Unclassified 2138
53 Ga0157374_10246178 3300013296 Bacteria 1759
54 Ga0157378_10025742 3300013297 Bacteria 5183
55 Ga0163162_10222847 3300013306 Bacteria 2015
56 Ga0163162_10319274 3300013306 Bacteria 1686
57 Ga0157372_10007769 3300013307 Bacteria 11388
58 Ga0157372_10174266 3300013307 Bacteria 2489
59 Ga0157372_10186284 3300013307 Bacteria 2404
60 Ga0157372_10312206 3300013307 Bacteria 1830
61 Ga0157372_10438848 3300013307 Bacteria 1522
62 Ga0157372_10459143 3300013307 Bacteria 1484
63 Ga0157372_10506151 3300013307 Bacteria 1408
64 Ga0157372_10551306 3300013307 Bacteria 1344
65 Ga0157372_10694977 3300013307 Bacteria 1184
66 Ga0157372_10924508 3300013307 Bacteria 1011
67 Ga0157372_11380806 3300013307 Bacteria 812
68 Ga0157372_11585417 3300013307 Bacteria 754
69 Ga0157375_10215399 3300013308 Bacteria 2078
70 Ga0157375_10371147 3300013308 Bacteria 1597
71 Ga0157376_10060793 3300014969 Bacteria 3174
72 Ga0213876_10160045 3300021384 Unclassified 1198
73 Ga0213876_10244383 3300021384 Bacteria 954
74 Ga0207656_10075806 3300025321 Unclassified 1503
75 Ga0207682_10219534 3300025893 Bacteria 879
76 Ga0207647_10182078 3300025904 Bacteria 1220
77 Ga0207705_10135929 3300025909 Bacteria 1833
78 Ga0207660_10635376 3300025917 Bacteria 870
79 Ga0207649_10062339 3300025920 Bacteria 2350
80 Ga0207649_10105762 3300025920 Unclassified 1871
81 Ga0207652_10192132 3300025921 Bacteria 1836
82 Ga0207652_10369747 3300025921 Unclassified 1294
83 Ga0207650_10034845 3300025925 Unclassified 3652
84 Ga0207644_10078200 3300025931 Bacteria 2438
85 Ga0207644_10409074 3300025931 Bacteria 1110
86 Ga0207706_10009168 3300025933 Bacteria 9099
87 Ga0207661_10046536 3300025944 Unclassified 3440
88 Ga0207661_10499517 3300025944 Bacteria 1111
89 Ga0207679_10039778 3300025945 Unclassified 3361
90 Ga0207679_10777836 3300025945 Bacteria 872
91 Ga0207667_10168059 3300025949 Bacteria 2254
92 Ga0207651_10244952 3300025960 Bacteria 1463
93 Ga0207712_10608338 3300025961 Unclassified 946
94 Ga0207640_10295815 3300025981 Bacteria 1278
95 Ga0207639_10172934 3300026041 Bacteria 1831
96 Ga0207639_10223397 3300026041 Bacteria 1628
97 Ga0207648_10367793 3300026089 Bacteria 1298
98 Ga0207674_10057583 3300026116 Bacteria 3939
99 Ga0207698_11059513 3300026142 Bacteria 823
100 Ga0207698_11148018 3300026142 Unclassified 790
101 Ga0307515_10000010 3300028794 Bacteria 651586
102 Ga0307515_10000107 3300028794 Bacteria 197046
103 Ga0307515_10215386 3300028794 Bacteria 1753
104 Ga0307408_100000953 3300031548 Bacteria 22475
105 Ga0395905_0197188 3300037471 Unclassified 1888
106 Ga0436365_0362468 3300039437 Bacteria 1966
107 Ga0436365_0951333 3300039437 Bacteria 12859
108 Ga0436365_1132792 3300039437 Unclassified 668
109 Ga0439431_0001343 3300041997 Bacteria 5422
110 Ga0439431_0045431 3300041997 Bacteria 1128
111 Ga0450898_032152 3300042134 Bacteria 967
112 Ga0439434_0018857 3300042435 Bacteria 2068
113 Ga0451577_0579969 3300042876 Bacteria 1018
114 Ga0453684_0006862 3300044712 Bacteria 21382
115 Ga0466957_0260401 3300044842 Bacteria 1156
116 Ga0451576_0443924 3300045051 Unclassified 1362
117 Ga0496121_0000010 3300048924 Bacteria 793488
118 Ga0501033_0273690 3300049570 Bacteria 1193
119 Ga0501034_0024307 3300049571 Bacteria 6163
120 Ga0501034_0031601 3300049571 Bacteria 5378
121 Ga0501034_0074393 3300049571 Bacteria 3405
122 Ga0501034_0077124 3300049571 Bacteria 3338
123 Ga0501036_0407074 3300049572 Bacteria 1135
124 Ga0501037_0050343 3300049573 Bacteria 3049
125 Ga0501043_0593005 3300049579 Bacteria 819
126 Ga0501047_0139524 3300049581 Bacteria 2303
127 Ga0501070_0135168 3300049586 Bacteria 2036
128 Ga0501073_0199503 3300049589 Bacteria 1384
129 Ga0501253_016559 3300049683 Bacteria 1229
130 Ga0501225_0044254 3300049705 Bacteria 1231
131 Ga0501080_0234729 3300049742 Bacteria 1676
132 Ga0501080_0457358 3300049742 Bacteria 1144
133 Ga0501035_0288684 3300049822 Bacteria 1385
134 Ga0501044_0247380 3300049823 Bacteria 1725
135 Ga0501044_0334929 3300049823 Unclassified 1435
136 Ga0501044_0405520 3300049823 Bacteria 1275
137 Ga0501044_0467993 3300049823 Bacteria 1165
138 Ga0500646_0008896 3300053090 Bacteria 2571
139 Ga0500652_002599 3300053131 Bacteria 5455
140 Ga0500568_0044619 3300053139 Bacteria 1767

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300013307 Ga0157372_10186284 Ga0157372_101862842 184
2 3300042134 Ga0450898_032152 Ga0450898_032152_390_953 187
3 2162886007 SwRhRL2b_contig_2166134 SwRhRL2b_0765.00002130 193
4 3300002738 JGI25154J39366_1000004 JGI25154J39366_100000412 193
5 3300003203 JGI25406J46586_10003120 JGI25406J46586_100031207 193
6 3300003320 rootH2_10028622 rootH2_100286222 193
7 3300005289 Ga0065704_10114772 Ga0065704_101147722 193
8 3300005289 Ga0065704_10159257 Ga0065704_101592572 193
9 3300005290 Ga0065712_10316766 Ga0065712_103167661 193
10 3300005293 Ga0065715_10036229 Ga0065715_100362291 193
11 3300005327 Ga0070658_10000223 Ga0070658_1000022326 193
12 3300005327 Ga0070658_10051671 Ga0070658_100516713 193
13 3300005329 Ga0070683_100150475 Ga0070683_1001504752 193
14 3300005330 Ga0070690_100013444 Ga0070690_1000134444 193
15 3300005331 Ga0070670_100127034 Ga0070670_1001270341 193
16 3300005331 Ga0070670_100255379 Ga0070670_1002553792 193
17 3300005334 Ga0068869_100069280 Ga0068869_1000692803 193
18 3300005335 Ga0070666_10032016 Ga0070666_100320162 193
19 3300005336 Ga0070680_100075285 Ga0070680_1000752853 193
20 3300005344 Ga0070661_100027063 Ga0070661_1000270633 193
21 3300005367 Ga0070667_100205621 Ga0070667_1002056212 193
22 3300005457 Ga0070662_100059814 Ga0070662_1000598142 193
23 3300005530 Ga0070679_100060265 Ga0070679_1000602653 193
24 3300005539 Ga0068853_100140939 Ga0068853_1001409392 193
25 3300005539 Ga0068853_100658800 Ga0068853_1006588001 193
26 3300005547 Ga0070693_100036433 Ga0070693_1000364332 193
27 3300005563 Ga0068855_100147568 Ga0068855_1001475683 193
28 3300005564 Ga0070664_100006721 Ga0070664_1000067214 193
29 3300005564 Ga0070664_100012225 Ga0070664_1000122255 193
30 3300005564 Ga0070664_100094975 Ga0070664_1000949752 193
31 3300005564 Ga0070664_100167760 Ga0070664_1001677602 193
32 3300005577 Ga0068857_100186783 Ga0068857_1001867832 193
33 3300005578 Ga0068854_100139579 Ga0068854_1001395792 193
34 3300005578 Ga0068854_100421921 Ga0068854_1004219212 193
35 3300005614 Ga0068856_100020043 Ga0068856_1000200432 193
36 3300005616 Ga0068852_100006525 Ga0068852_1000065255 193
37 3300005616 Ga0068852_100021879 Ga0068852_1000218792 193
38 3300005616 Ga0068852_100414916 Ga0068852_1004149162 193
39 3300005616 Ga0068852_100861973 Ga0068852_1008619731 193
40 3300006358 Ga0068871_100275826 Ga0068871_1002758262 193
41 3300009093 Ga0105240_10411919 Ga0105240_104119192 193
42 3300009147 Ga0114129_10110712 Ga0114129_101107124 193
43 3300009545 Ga0105237_10372817 Ga0105237_103728172 193
44 3300009553 Ga0105249_10251475 Ga0105249_102514751 193
45 3300013100 Ga0157373_10025349 Ga0157373_100253492 193
46 3300013100 Ga0157373_10113936 Ga0157373_101139362 193
47 3300013102 Ga0157371_10005569 Ga0157371_100055697 193
48 3300013102 Ga0157371_10037484 Ga0157371_100374842 193
49 3300013104 Ga0157370_10039481 Ga0157370_100394812 193
50 3300013104 Ga0157370_10104867 Ga0157370_101048672 193
51 3300013105 Ga0157369_10020928 Ga0157369_100209284 193
52 3300013105 Ga0157369_10154235 Ga0157369_101542352 193
53 3300013296 Ga0157374_10068496 Ga0157374_100684963 193
54 3300013296 Ga0157374_10168143 Ga0157374_101681432 193
55 3300013296 Ga0157374_10246178 Ga0157374_102461782 193
56 3300013297 Ga0157378_10025742 Ga0157378_100257422 193
57 3300013306 Ga0163162_10222847 Ga0163162_102228472 193
58 3300013306 Ga0163162_10319274 Ga0163162_103192742 193
59 3300013307 Ga0157372_10007769 Ga0157372_100077697 193
60 3300013307 Ga0157372_10174266 Ga0157372_101742664 193
61 3300013307 Ga0157372_10312206 Ga0157372_103122062 193
62 3300013307 Ga0157372_10438848 Ga0157372_104388481 193
63 3300013307 Ga0157372_10459143 Ga0157372_104591432 193
64 3300013307 Ga0157372_10506151 Ga0157372_105061512 193
65 3300013307 Ga0157372_10551306 Ga0157372_105513062 193
66 3300013307 Ga0157372_10694977 Ga0157372_106949772 193
67 3300013307 Ga0157372_10924508 Ga0157372_109245081 193
68 3300013307 Ga0157372_11380806 Ga0157372_113808061 193
69 3300013307 Ga0157372_11585417 Ga0157372_115854171 193
70 3300013308 Ga0157375_10215399 Ga0157375_102153992 193
71 3300013308 Ga0157375_10371147 Ga0157375_103711472 193
72 3300014969 Ga0157376_10060793 Ga0157376_100607933 193
73 3300021384 Ga0213876_10160045 Ga0213876_101600452 193
74 3300021384 Ga0213876_10244383 Ga0213876_102443831 193
75 3300025321 Ga0207656_10075806 Ga0207656_100758062 193
76 3300025893 Ga0207682_10219534 Ga0207682_102195341 193
77 3300025904 Ga0207647_10182078 Ga0207647_101820781 193
78 3300025909 Ga0207705_10135929 Ga0207705_101359292 193
79 3300025917 Ga0207660_10635376 Ga0207660_106353762 193
80 3300025920 Ga0207649_10062339 Ga0207649_100623392 193
81 3300025920 Ga0207649_10105762 Ga0207649_101057622 193
82 3300025921 Ga0207652_10192132 Ga0207652_101921322 193
83 3300025921 Ga0207652_10369747 Ga0207652_103697472 193
84 3300025925 Ga0207650_10034845 Ga0207650_100348452 193
85 3300025931 Ga0207644_10078200 Ga0207644_100782002 193
86 3300025931 Ga0207644_10409074 Ga0207644_104090742 193
87 3300025933 Ga0207706_10009168 Ga0207706_100091684 193
88 3300025944 Ga0207661_10046536 Ga0207661_100465362 193
89 3300025944 Ga0207661_10499517 Ga0207661_104995172 193
90 3300025945 Ga0207679_10039778 Ga0207679_100397782 193
91 3300025945 Ga0207679_10777836 Ga0207679_107778361 193
92 3300025949 Ga0207667_10168059 Ga0207667_101680592 193
93 3300025960 Ga0207651_10244952 Ga0207651_102449522 193
94 3300025961 Ga0207712_10608338 Ga0207712_106083381 193
95 3300025981 Ga0207640_10295815 Ga0207640_102958151 193
96 3300026041 Ga0207639_10172934 Ga0207639_101729342 193
97 3300026041 Ga0207639_10223397 Ga0207639_102233971 193
98 3300026089 Ga0207648_10367793 Ga0207648_103677932 193
99 3300026116 Ga0207674_10057583 Ga0207674_100575832 193
100 3300026142 Ga0207698_11059513 Ga0207698_110595131 193
101 3300026142 Ga0207698_11148018 Ga0207698_111480181 193
102 3300028794 Ga0307515_10000010 Ga0307515_1000001097 193
103 3300028794 Ga0307515_10000107 Ga0307515_1000010776 193
104 3300028794 Ga0307515_10215386 Ga0307515_102153862 193
105 3300031548 Ga0307408_100000953 Ga0307408_1000009534 193
106 3300037471 Ga0395905_0197188 Ga0395905_0197188_977_1597 193
107 3300039437 Ga0436365_0362468 Ga0436365_0362468_644_1345 193
108 3300039437 Ga0436365_0951333 Ga0436365_0951333_3435_4106 193
109 3300039437 Ga0436365_1132792 Ga0436365_1132792_44_625 193
110 3300041997 Ga0439431_0001343 Ga0439431_0001343_1743_2363 193
111 3300041997 Ga0439431_0045431 Ga0439431_0045431_323_955 193
112 3300042435 Ga0439434_0018857 Ga0439434_0018857_1459_2040 193
113 3300042876 Ga0451577_0579969 Ga0451577_0579969_422_1003 193
114 3300044712 Ga0453684_0006862 Ga0453684_0006862_17655_18275 193
115 3300044842 Ga0466957_0260401 Ga0466957_0260401_336_917 193
116 3300045051 Ga0451576_0443924 Ga0451576_0443924_733_1314 193
117 3300048924 Ga0496121_0000010 Ga0496121_0000010_282066_282647 193
118 3300049570 Ga0501033_0273690 Ga0501033_0273690_45_626 193
119 3300049571 Ga0501034_0024307 Ga0501034_0024307_1557_2177 193
120 3300049571 Ga0501034_0031601 Ga0501034_0031601_1028_1693 193
121 3300049571 Ga0501034_0074393 Ga0501034_0074393_1239_1850 193
122 3300049571 Ga0501034_0077124 Ga0501034_0077124_1149_1730 193
123 3300049572 Ga0501036_0407074 Ga0501036_0407074_338_1003 193
124 3300049573 Ga0501037_0050343 Ga0501037_0050343_2168_2839 193
125 3300049579 Ga0501043_0593005 Ga0501043_0593005_35_616 193
126 3300049581 Ga0501047_0139524 Ga0501047_0139524_933_1565 193
127 3300049586 Ga0501070_0135168 Ga0501070_0135168_926_1597 193
128 3300049589 Ga0501073_0199503 Ga0501073_0199503_66_737 193
129 3300049683 Ga0501253_016559 Ga0501253_016559_220_870 193
130 3300049705 Ga0501225_0044254 Ga0501225_0044254_482_1063 193
131 3300049742 Ga0501080_0234729 Ga0501080_0234729_37_726 193
132 3300049742 Ga0501080_0457358 Ga0501080_0457358_165_836 193
133 3300049822 Ga0501035_0288684 Ga0501035_0288684_33_614 193
134 3300049823 Ga0501044_0247380 Ga0501044_0247380_17_598 193
135 3300049823 Ga0501044_0334929 Ga0501044_0334929_177_824 193
136 3300049823 Ga0501044_0405520 Ga0501044_0405520_123_794 193
137 3300049823 Ga0501044_0467993 Ga0501044_0467993_163_795 193
138 3300053090 Ga0500646_0008896 Ga0500646_0008896_1661_2347 193
139 3300053131 Ga0500652_002599 Ga0500652_002599_2125_2769 193
140 3300053139 Ga0500568_0044619 Ga0500568_0044619_370_1014 193
141 iso_pu_bacteria 2839989709 2839991229 193
142 iso_pu_bacteria 2883068021 2883073182 193
143 iso_pu_bacteria 2896085136 2896087421 193
144 iso_pu_bacteria 2896109856 2896114755 193
145 iso_pu_bacteria 2896317667 2896320044 193
146 iso_pu_bacteria 2910245624 2910248721 193
147 iso_pu_bacteria 3003233435 3003234270 193

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04055

Radical_SAM

Radical SAM superfamily

53

166

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
6nhl-assembly1.cif.gz_B-2 crystal structure of quee from escherichia coli 0.8913 2 184
6nhl-assembly1.cif.gz_A crystal structure of quee from escherichia coli 0.8738 2 184
6nhl-assembly1.cif.gz_B-2 crystal structure of quee from escherichia coli 0.8438 2 184
4njh-assembly1.cif.gz_B crystal structure of quee from burkholderia multivorans in complex with adomet and 6-carboxy-5,6,7,8-tetrahydropterin 0.8332 2 193
6nhl-assembly1.cif.gz_A crystal structure of quee from escherichia coli 0.8272 2 184
ID Description Score Start End Superfamily
af_P64554_2_223_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8776 2 193 3.20.20.70
af_P64554_2_223_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8692 2 193 3.20.20.70
4njjA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8364 3 193 3.20.20.70
af_Q2G1X7_4_231_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8344 2 187 3.20.20.70
4njjA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8242 3 193 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A4Q6DN63-F1-model_v4 7-carboxy-7-deazaguanine synthase QueE 0.9938 65 193 GO:0051539
AF-A0A4Q5YDI2-F1-model_v4 7-carboxy-7-deazaguanine synthase QueE 0.9925 53 193 GO:0051539
AF-A0A090PW06-F1-model_v4 deleted 0.9924 77 193
AF-A0A7Y3GPK6-F1-model_v4 7-carboxy-7-deazaguanine synthase QueE 0.9911 67 193 GO:0051539
AF-A0A4Q3GUW7-F1-model_v4 deleted 0.9876 59 193

Feature Viewer

pLDDT pTM Quality
90.14 0.87 High
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Predicted Structure (AlphaFold2)

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