F200788

General Info

Members Datasets Scaffolds Average Seq Length
147 82 146 381

Family's Representative Sequence

Representative Sequence 3300031251|Ga0265327_10005142|Ga0265327_100051426
Length 421
Sequence MPRPDILVFLPVTTRNGIAAPSSGRMPVNVMAIISSASGQSAGSLQETQRGRTNVKTAQALAKMKALEKKSKSYKLPMGELAIFTQQLASLLTAGLPLVQCLEALQDQTEDQCFRIVIRDVRSDISSGNSFSSAVRKFPNSFNTLFVSMVEAGEASGGLAEILMKVAGYFESTVKLTKKVKSAMTYPIAVIGLAVALVNVLLIFVIPVFAAMFADFGAKLPAPTQFLIDLSNFMKKWWWAIFSGAYGVYWGVGKFIATPNGRRQKDLLLVRAPIFGNLIHKIALSRFCRTYATLIRSGVPILRTLEIVSAASNKVQIEDACQEIAKHVSQGGQVSEVLAANTFFPPMMKHMVKAGEATGNVDGMMTKIADFYDVECEATVSALTSLIEPILIVFLGVVVGGIVMAMFLPIFQLGAVAGGLQ

Samples

Sample ID Description Type Environment
1 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
11 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
12 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
13 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
14 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
15 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
16 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
17 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
18 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
19 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
20 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
31 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
32 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
33 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
34 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
35 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
36 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
37 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
38 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
39 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
40 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
41 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
42 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
43 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
44 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
45 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
46 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
47 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
48 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
49 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
50 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
51 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
52 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
53 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
54 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
55 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
56 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
57 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
58 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
59 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
60 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
61 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
62 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
63 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
64 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
65 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
66 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
67 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
70 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
78 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
79 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
82 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.32
Metatranscriptomes 0
Isolates 0.68

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 95.92
Stem 0
Stem Tuber 0
Unclassified 4.08

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10055752 3300003323 Bacteria 3778
2 rootH1_10157966 3300003323 Bacteria 1554
3 Ga0070658_10053055 3300005327 Unclassified 3290
4 Ga0070658_10059107 3300005327 Bacteria 3122
5 Ga0070683_100008670 3300005329 Bacteria 8643
6 Ga0070683_100341776 3300005329 Bacteria 1425
7 Ga0068869_100000122 3300005334 Bacteria 37440
8 Ga0068868_100126317 3300005338 Bacteria 2090
9 Ga0070713_100021089 3300005436 Bacteria 5005
10 Ga0068867_100025110 3300005459 Bacteria 4275
11 Ga0070707_100142114 3300005468 Unclassified 2336
12 Ga0070707_100147246 3300005468 Unclassified 2292
13 Ga0068853_100000038 3300005539 Bacteria 107719
14 Ga0070695_100090528 3300005545 Bacteria 2042
15 Ga0068856_100044201 3300005614 Bacteria 4383
16 Ga0068860_100002465 3300005843 Bacteria 19427
17 Ga0070717_10000079 3300006028 Bacteria 79689
18 Ga0097621_100006255 3300006237 Bacteria 8449
19 Ga0068871_100176330 3300006358 Bacteria 1835
20 Ga0068865_100010372 3300006881 Bacteria 5799
21 Ga0111539_10325099 3300009094 Bacteria 1790
22 Ga0213876_10018220 3300021384 Bacteria 3706
23 Ga0207705_10045064 3300025909 Unclassified 3170
24 Ga0207646_10043209 3300025922 Bacteria 4048
25 Ga0207646_10098936 3300025922 Unclassified 2614
26 Ga0207700_10030748 3300025928 Bacteria 3807
27 Ga0207704_10013913 3300025938 Bacteria 4047
28 Ga0207689_10000476 3300025942 Bacteria 37736
29 Ga0207661_10298639 3300025944 Bacteria 1443
30 Ga0207639_10000061 3300026041 Bacteria 107734
31 Ga0207702_10004573 3300026078 Bacteria 12260
32 Ga0207648_10037198 3300026089 Bacteria 4287
33 Ga0268264_10001017 3300028381 Bacteria 28228
34 Ga0265337_1000801 3300028556 Bacteria 16558
35 Ga0265326_10008196 3300028558 Bacteria 3161
36 Ga0265319_1003505 3300028563 Bacteria 8153
37 Ga0265319_1003886 3300028563 Bacteria 7619
38 Ga0265319_1016709 3300028563 Bacteria 2809
39 Ga0265334_10003438 3300028573 Bacteria 7200
40 Ga0265318_10000016 3300028577 Bacteria 184782
41 Ga0265318_10001454 3300028577 Bacteria 13924
42 Ga0265318_10001774 3300028577 Bacteria 12265
43 Ga0265318_10011111 3300028577 Bacteria 3891
44 Ga0265318_10046697 3300028577 Bacteria 1634
45 Ga0265323_10000767 3300028653 Bacteria 17229
46 Ga0265323_10001005 3300028653 Bacteria 14696
47 Ga0265323_10003170 3300028653 Bacteria 7327
48 Ga0265323_10034219 3300028653 Bacteria 1877
49 Ga0265323_10049227 3300028653 Bacteria 1500
50 Ga0265322_10000359 3300028654 Bacteria 18994
51 Ga0265322_10003485 3300028654 Bacteria 4749
52 Ga0265336_10004357 3300028666 Bacteria 5363
53 Ga0265336_10012932 3300028666 Bacteria 2794
54 Ga0265338_10000245 3300028800 Bacteria 99446
55 Ga0265338_10003870 3300028800 Bacteria 20738
56 Ga0265338_10012918 3300028800 Bacteria 9485
57 Ga0265324_10000274 3300029957 Bacteria 38053
58 Ga0265324_10025822 3300029957 Bacteria 2081
59 Ga0265330_10021886 3300031235 Bacteria 2913
60 Ga0265320_10002183 3300031240 Bacteria 13758
61 Ga0265320_10002478 3300031240 Bacteria 12852
62 Ga0265320_10003603 3300031240 Bacteria 10352
63 Ga0265320_10007678 3300031240 Bacteria 6669
64 Ga0265320_10013278 3300031240 Bacteria 4743
65 Ga0265320_10035253 3300031240 Bacteria 2538
66 Ga0265329_10015263 3300031242 Bacteria 2687
67 Ga0265339_10073717 3300031249 Bacteria 1815
68 Ga0265331_10015053 3300031250 Bacteria 4097
69 Ga0265327_10000417 3300031251 Bacteria 77684
70 Ga0265327_10005142 3300031251 Bacteria 11098
71 Ga0265327_10006553 3300031251 Bacteria 9264
72 Ga0265327_10028005 3300031251 Bacteria 3232
73 Ga0265327_10069476 3300031251 Bacteria 1768
74 Ga0265316_10003403 3300031344 Bacteria 16098
75 Ga0265316_10011862 3300031344 Bacteria 7837
76 Ga0265316_10014441 3300031344 Bacteria 6949
77 Ga0265316_10060699 3300031344 Bacteria 2938
78 Ga0307408_100000003 3300031548 Bacteria 618438
79 Ga0265313_10000406 3300031595 Bacteria 46450
80 Ga0265313_10001043 3300031595 Bacteria 26985
81 Ga0307508_10000112 3300031616 Bacteria 95874
82 Ga0265314_10000596 3300031711 Bacteria 45506
83 Ga0265314_10025873 3300031711 Bacteria 4418
84 Ga0265342_10018068 3300031712 Bacteria 4575
85 Ga0265342_10036673 3300031712 Bacteria 2994
86 Ga0265342_10051182 3300031712 Bacteria 2465
87 Ga0316576_10000188 3300031727 Bacteria 25989
88 Ga0316578_10022398 3300031728 Bacteria 3522
89 Ga0316578_10127127 3300031728 Bacteria 1533
90 Ga0307410_10000037 3300031852 Bacteria 48189
91 Ga0307412_10011496 3300031911 Bacteria 5131
92 Ga0307416_100000027 3300032002 Bacteria 172418
93 Ga0307411_10044614 3300032005 Bacteria 2846
94 Ga0373935_0039054 3300035692 Bacteria 2974
95 Ga0373947_0085698 3300035725 Unclassified 1957
96 Ga0316584_0002689 3300036712 Bacteria 11351
97 Ga0395905_0000030 3300037471 Bacteria 289430
98 Ga0436365_1084566 3300039437 Bacteria 20834
99 Ga0451577_0000023 3300042876 Bacteria 419051
100 Ga0451577_0000125 3300042876 Bacteria 169053
101 Ga0451577_0002106 3300042876 Bacteria 24519
102 Ga0451577_0013977 3300042876 Bacteria 7494
103 Ga0451577_0084000 3300042876 Bacteria 2841
104 Ga0451577_0106099 3300042876 Unclassified 2511
105 Ga0451577_0240229 3300042876 Bacteria 1639
106 Ga0453683_0005153 3300044673 Bacteria 9156
107 Ga0453684_0000001 3300044712 Bacteria 2623166
108 Ga0453684_0000076 3300044712 Bacteria 437513
109 Ga0453684_0000093 3300044712 Bacteria 384050
110 Ga0453684_0001030 3300044712 Bacteria 89069
111 Ga0453684_0017444 3300044712 Bacteria 11120
112 Ga0453684_0232511 3300044712 Bacteria 2127
113 Ga0451576_0002213 3300045051 Bacteria 29932
114 Ga0451576_0002973 3300045051 Bacteria 24012
115 Ga0451576_0004242 3300045051 Bacteria 18820
116 Ga0451576_0004359 3300045051 Bacteria 18453
117 Ga0451576_0004856 3300045051 Bacteria 17223
118 Ga0451576_0073232 3300045051 Bacteria 3565
119 Ga0451576_0425176 3300045051 Bacteria 1394
120 Ga0501032_0000250 3300049569 Bacteria 44943
121 Ga0501032_0001407 3300049569 Bacteria 19141
122 Ga0501032_0014486 3300049569 Bacteria 5584
123 Ga0501034_0069797 3300049571 Bacteria 3524
124 Ga0501036_0012207 3300049572 Bacteria 7118
125 Ga0501036_0017586 3300049572 Bacteria 5979
126 Ga0501037_0120503 3300049573 Bacteria 1886
127 Ga0501039_0024349 3300049575 Bacteria 4649
128 Ga0501042_0038774 3300049578 Bacteria 3383
129 Ga0501043_0051407 3300049579 Bacteria 3237
130 Ga0501043_0053420 3300049579 Bacteria 3173
131 Ga0501046_0000550 3300049580 Bacteria 37312
132 Ga0501046_0060273 3300049580 Bacteria 2969
133 Ga0501047_0016915 3300049581 Bacteria 6971
134 Ga0501047_0034079 3300049581 Bacteria 4916
135 Ga0501047_0037066 3300049581 Bacteria 4714
136 Ga0501048_0041053 3300049582 Bacteria 3314
137 Ga0501243_012480 3300049675 Bacteria 1341
138 Ga0501083_0000926 3300049744 Bacteria 19476
139 Ga0501035_0000309 3300049822 Bacteria 56854
140 Ga0501035_0004375 3300049822 Bacteria 13418
141 Ga0501035_0082492 3300049822 Bacteria 2837
142 Ga0501044_0000049 3300049823 Bacteria 145043
143 Ga0501044_0029432 3300049823 Bacteria 5791
144 Ga0501044_0304724 3300049823 Bacteria 1521
145 Ga0501045_0187485 3300049824 Bacteria 1541
146 nmdc:mga08x19_106794_c1 3300050514 Unclassified 1863

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300042876 Ga0451577_0000023 Ga0451577_0000023_144551_145690 274
2 3300003323 rootH1_10157966 rootH1_101579662 287
3 3300031616 Ga0307508_10000112 Ga0307508_100001125 293
4 3300049823 Ga0501044_0304724 Ga0501044_0304724_162_1247 304
5 3300005329 Ga0070683_100341776 Ga0070683_1003417761 309
6 3300025944 Ga0207661_10298639 Ga0207661_102986391 309
7 3300049569 Ga0501032_0000250 Ga0501032_0000250_35486_36625 309
8 3300049572 Ga0501036_0012207 Ga0501036_0012207_189_1328 309
9 3300049581 Ga0501047_0016915 Ga0501047_0016915_4301_5440 309
10 3300049581 Ga0501047_0034079 Ga0501047_0034079_1630_2769 309
11 3300049822 Ga0501035_0000309 Ga0501035_0000309_10646_11785 309
12 3300049823 Ga0501044_0000049 Ga0501044_0000049_7017_8156 309
13 3300005329 Ga0070683_100008670 Ga0070683_1000086704 313
14 3300028563 Ga0265319_1003886 Ga0265319_10038866 319
15 3300028577 Ga0265318_10046697 Ga0265318_100466972 319
16 3300031240 Ga0265320_10013278 Ga0265320_100132784 319
17 3300031344 Ga0265316_10060699 Ga0265316_100606992 320
18 3300031712 Ga0265342_10051182 Ga0265342_100511823 320
19 3300031251 Ga0265327_10069476 Ga0265327_100694762 322
20 3300044712 Ga0453684_0001030 Ga0453684_0001030_29939_31144 322
21 3300035725 Ga0373947_0085698 Ga0373947_0085698_615_1844 323
22 3300028563 Ga0265319_1016709 Ga0265319_10167092 324
23 3300031344 Ga0265316_10014441 Ga0265316_100144417 324
24 3300005614 Ga0068856_100044201 Ga0068856_1000442012 325
25 3300026078 Ga0207702_10004573 Ga0207702_1000457313 325
26 3300028573 Ga0265334_10003438 Ga0265334_100034383 325
27 3300029957 Ga0265324_10025822 Ga0265324_100258222 325
28 3300031240 Ga0265320_10003603 Ga0265320_100036036 325
29 3300005334 Ga0068869_100000122 Ga0068869_10000012210 326
30 3300005338 Ga0068868_100126317 Ga0068868_1001263172 326
31 3300005459 Ga0068867_100025110 Ga0068867_1000251104 326
32 3300006237 Ga0097621_100006255 Ga0097621_1000062553 326
33 3300006881 Ga0068865_100010372 Ga0068865_1000103723 326
34 3300025938 Ga0207704_10013913 Ga0207704_100139133 326
35 3300025942 Ga0207689_10000476 Ga0207689_1000047629 326
36 3300026089 Ga0207648_10037198 Ga0207648_100371983 326
37 3300045051 Ga0451576_0002973 Ga0451576_0002973_11520_12704 327
38 3300031548 Ga0307408_100000003 Ga0307408_100000003423 331
39 3300031852 Ga0307410_10000037 Ga0307410_1000003738 331
40 3300031911 Ga0307412_10011496 Ga0307412_100114965 331
41 3300032002 Ga0307416_100000027 Ga0307416_10000002740 331
42 3300032005 Ga0307411_10044614 Ga0307411_100446142 331
43 3300042876 Ga0451577_0013977 Ga0451577_0013977_4249_5412 331
44 3300044712 Ga0453684_0232511 Ga0453684_0232511_612_1718 331
45 3300049569 Ga0501032_0014486 Ga0501032_0014486_531_1727 331
46 3300049580 Ga0501046_0000550 Ga0501046_0000550_25332_26528 331
47 3300049823 Ga0501044_0029432 Ga0501044_0029432_2553_3749 331
48 3300031240 Ga0265320_10035253 Ga0265320_100352531 332
49 3300031251 Ga0265327_10028005 Ga0265327_100280053 332
50 3300031595 Ga0265313_10000406 Ga0265313_1000040644 332
51 3300039437 Ga0436365_1084566 Ga0436365_1084566_7770_8981 332
52 3300028577 Ga0265318_10000016 Ga0265318_10000016101 333
53 3300031250 Ga0265331_10015053 Ga0265331_100150533 333
54 3300031595 Ga0265313_10001043 Ga0265313_1000104312 333
55 3300031711 Ga0265314_10000596 Ga0265314_1000059611 333
56 3300031251 Ga0265327_10000417 Ga0265327_1000041766 334
57 3300044712 Ga0453684_0000093 Ga0453684_0000093_263357_264499 334
58 3300045051 Ga0451576_0073232 Ga0451576_0073232_1652_2791 334
59 3300042876 Ga0451577_0084000 Ga0451577_0084000_1417_2631 335
60 3300044712 Ga0453684_0000001 Ga0453684_0000001_108756_109970 335
61 3300009094 Ga0111539_10325099 Ga0111539_103250991 336
62 3300049579 Ga0501043_0053420 Ga0501043_0053420_1664_2848 336
63 3300021384 Ga0213876_10018220 Ga0213876_100182203 337
64 3300005436 Ga0070713_100021089 Ga0070713_1000210893 338
65 3300025928 Ga0207700_10030748 Ga0207700_100307483 338
66 3300050514 nmdc:mga08x19_106794_c1 nmdc:mga08x19_106794_c1_497_1726 338
67 3300005327 Ga0070658_10053055 Ga0070658_100530553 339
68 3300025909 Ga0207705_10045064 Ga0207705_100450643 339
69 3300005468 Ga0070707_100147246 Ga0070707_1001472462 340
70 3300025922 Ga0207646_10043209 Ga0207646_100432092 340
71 3300049675 Ga0501243_012480 Ga0501243_012480_110_1285 341
72 3300006028 Ga0070717_10000079 Ga0070717_100000794 342
73 3300044712 Ga0453684_0017444 Ga0453684_0017444_1497_2771 344
74 3300045051 Ga0451576_0425176 Ga0451576_0425176_10_1284 344
75 3300049569 Ga0501032_0001407 Ga0501032_0001407_14732_15955 344
76 3300049571 Ga0501034_0069797 Ga0501034_0069797_1213_2436 344
77 3300049572 Ga0501036_0017586 Ga0501036_0017586_1696_2919 344
78 3300049573 Ga0501037_0120503 Ga0501037_0120503_91_1314 344
79 3300049575 Ga0501039_0024349 Ga0501039_0024349_2477_3700 344
80 3300049578 Ga0501042_0038774 Ga0501042_0038774_466_1689 344
81 3300049579 Ga0501043_0051407 Ga0501043_0051407_1520_2743 344
82 3300049580 Ga0501046_0060273 Ga0501046_0060273_935_2158 344
83 3300049582 Ga0501048_0041053 Ga0501048_0041053_601_1824 344
84 3300049822 Ga0501035_0004375 Ga0501035_0004375_4680_5903 344
85 3300049824 Ga0501045_0187485 Ga0501045_0187485_138_1361 344
86 iso_pu_bacteria 2786546940 2788435493 344
87 3300005843 Ga0068860_100002465 Ga0068860_10000246511 345
88 3300028381 Ga0268264_10001017 Ga0268264_100010173 345
89 3300031251 Ga0265327_10005142 Ga0265327_100051426 346
90 3300031727 Ga0316576_10000188 Ga0316576_1000018819 346
91 3300031728 Ga0316578_10022398 Ga0316578_100223984 346
92 3300031728 Ga0316578_10127127 Ga0316578_101271272 346
93 3300036712 Ga0316584_0002689 Ga0316584_0002689_5969_7201 346
94 3300042876 Ga0451577_0000125 Ga0451577_0000125_76292_77503 346
95 3300042876 Ga0451577_0002106 Ga0451577_0002106_2347_3516 346
96 3300044712 Ga0453684_0000076 Ga0453684_0000076_103640_104851 346
97 3300045051 Ga0451576_0002213 Ga0451576_0002213_25484_26749 346
98 3300028653 Ga0265323_10000767 Ga0265323_100007674 347
99 3300028654 Ga0265322_10000359 Ga0265322_100003597 347
100 3300031344 Ga0265316_10011862 Ga0265316_100118623 347
101 3300049581 Ga0501047_0037066 Ga0501047_0037066_537_1766 347
102 3300049822 Ga0501035_0082492 Ga0501035_0082492_1035_2264 347
103 3300006358 Ga0068871_100176330 Ga0068871_1001763301 348
104 3300028556 Ga0265337_1000801 Ga0265337_100080111 348
105 3300028558 Ga0265326_10008196 Ga0265326_100081963 348
106 3300028563 Ga0265319_1003505 Ga0265319_10035053 348
107 3300028577 Ga0265318_10001454 Ga0265318_1000145410 348
108 3300028577 Ga0265318_10001774 Ga0265318_1000177410 348
109 3300028577 Ga0265318_10011111 Ga0265318_100111112 348
110 3300028653 Ga0265323_10001005 Ga0265323_100010053 348
111 3300028653 Ga0265323_10003170 Ga0265323_100031701 348
112 3300028653 Ga0265323_10034219 Ga0265323_100342192 348
113 3300028654 Ga0265322_10003485 Ga0265322_100034854 348
114 3300028666 Ga0265336_10004357 Ga0265336_100043573 348
115 3300028666 Ga0265336_10012932 Ga0265336_100129323 348
116 3300028800 Ga0265338_10000245 Ga0265338_1000024532 348
117 3300028800 Ga0265338_10003870 Ga0265338_100038707 348
118 3300028800 Ga0265338_10012918 Ga0265338_100129183 348
119 3300029957 Ga0265324_10000274 Ga0265324_1000027413 348
120 3300031235 Ga0265330_10021886 Ga0265330_100218863 348
121 3300031240 Ga0265320_10002183 Ga0265320_1000218313 348
122 3300031240 Ga0265320_10002478 Ga0265320_100024787 348
123 3300031240 Ga0265320_10007678 Ga0265320_100076784 348
124 3300031242 Ga0265329_10015263 Ga0265329_100152633 348
125 3300031249 Ga0265339_10073717 Ga0265339_100737171 348
126 3300031251 Ga0265327_10006553 Ga0265327_100065533 348
127 3300031344 Ga0265316_10003403 Ga0265316_100034037 348
128 3300031711 Ga0265314_10025873 Ga0265314_100258731 348
129 3300031712 Ga0265342_10018068 Ga0265342_100180683 348
130 3300031712 Ga0265342_10036673 Ga0265342_100366733 348
131 3300035692 Ga0373935_0039054 Ga0373935_0039054_1012_2193 348
132 3300037471 Ga0395905_0000030 Ga0395905_0000030_120825_122006 348
133 3300042876 Ga0451577_0240229 Ga0451577_0240229_25_1206 348
134 3300044673 Ga0453683_0005153 Ga0453683_0005153_1507_2724 348
135 3300045051 Ga0451576_0004242 Ga0451576_0004242_16083_17264 348
136 3300045051 Ga0451576_0004359 Ga0451576_0004359_1528_2709 348
137 3300045051 Ga0451576_0004856 Ga0451576_0004856_12804_14021 348
138 3300049744 Ga0501083_0000926 Ga0501083_0000926_4714_5895 348
139 3300003323 rootH1_10055752 rootH1_100557524 349
140 3300005327 Ga0070658_10059107 Ga0070658_100591072 349
141 3300005468 Ga0070707_100142114 Ga0070707_1001421142 349
142 3300005539 Ga0068853_100000038 Ga0068853_10000003887 349
143 3300005545 Ga0070695_100090528 Ga0070695_1000905282 349
144 3300025922 Ga0207646_10098936 Ga0207646_100989362 349
145 3300026041 Ga0207639_10000061 Ga0207639_100000612 349
146 3300028653 Ga0265323_10049227 Ga0265323_100492272 349
147 3300042876 Ga0451577_0106099 Ga0451577_0106099_797_2014 349

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00482

T2SSF

Type II secretion system (T2SS), protein F

287

409

0.99

PF00482

T2SSF

Type II secretion system (T2SS), protein F

84

207

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
2vmb-assembly2.cif.gz_B the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae 0.9665 36 143
3c1q-assembly1.cif.gz_A the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae 0.9593 35 140
2vma-assembly1.cif.gz_A the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae 0.9481 35 147
5nbg-assembly1.cif.gz_B structure of the cytoplasmic domain i of outf in the d. dadantii type ii secretion system 0.9458 36 141
2whn-assembly2.cif.gz_B n-terminal domain from the pilc type iv pilus biogenesis protein 0.9457 34 136
ID Description Score Start End Superfamily
af_P36646_52_165_1.20.81.30 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.964 38 144 1.20.81.30
2whnB00 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.9457 34 136 1.20.81.30
3c1qB00 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.9311 36 144 1.20.81.30
2whnB00 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.9282 34 136 1.20.81.30
af_P36646_249_359_1.20.81.30 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.9254 211 319 1.20.81.30
ID Description Score Start End GO Terms
AF-X0T0P0-F1-model_v4 Type II secretion system protein GspF domain-containing protein 0.9716 34 124 GO:0005886
AF-A0A4Q6D0F0-F1-model_v4 deleted 0.9634 35 130
AF-A0A7C1GIK0-F1-model_v4 Type II secretion system F family protein 0.9363 34 152 GO:0005886
AF-A0A496SHG4-F1-model_v4 Type II secretion system F family protein 0.919 198 343 GO:0005886
AF-A0A4Q3KAC8-F1-model_v4 deleted 0.9035 26 131

Feature Viewer

pLDDT pTM Quality
72.17 0.54 Medium
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Predicted Structure (AlphaFold2)

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