F201731
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 147 | 111 | 294 | 554 |
Family's Representative Sequence
| Representative Sequence | 3300053153|Ga0500616_0002144|Ga0500616_0002144_6986_8785 |
| Length | 599 |
| Sequence | LKKASGKITEKAGEKEFLKYNNSYPVIIYSYKNDFLTSHAKPKIFLALPIMTNQEIADIFDLLSKLMDIHGENSFKTKTYSTAAYRLEKLSSALAEMSPEQISSISGVGDAVTKKIQDILTTGKLPLLEEYLNKTPPGVVEMLAIKGIGPKKIAVLWKELGAESLGELEYACNENRLITLKGFGAKTQESILKSIAFMRNNMGFYLWAEAEAIALQVKNDLQTAFPDAKIEFTGEYRRQVPALASISFITDLADEQIRSAFELVPDTVFENEEHTLFVQIPNAPTLHFYKCQTQDFYLALFTGTSSPLFAEAFATQYTIPEQAESEEAIFAHNSLSFIPPALRESGDILTKAATNTIPELIQPGDIKGIIHSHSTWSDGVNTLEQMAIAARDKGYEYLVISDHSQAAFYANGLFPERIILQHAEIDMLNEKLAPFRIFKSIEADILHDGSLDYNAEVLSSFDLVIASVHSNLKMNEEKAMQRLLAAIQNPFTTILGHPTGRLLLSREGYPVDHKTLIDACVEHNVVIEINAHPRRLDLDWSWIPYALEKGAMLSVDPDAHSIKGMDLVKYGVYAAQKGGLTKERNLSSMGLAAFENFLK |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 2 | 2162886007 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 | Metagenome | Rhizosphere |
| 3 | 3300001979 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 | Metagenome | Rhizosphere |
| 4 | 3300001989 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 | Metagenome | Rhizosphere |
| 5 | 3300002738 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA | Metagenome | Unclassified |
| 6 | 3300003215 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF | Metagenome | Endosphere |
| 7 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 8 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 9 | 3300003354 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS | Metagenome | Endosphere |
| 10 | 3300003771 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 | Metagenome | Endosphere |
| 11 | 3300003790 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 | Metagenome | Endosphere |
| 12 | 3300003791 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 | Metagenome | Endosphere |
| 13 | 3300003794 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 | Metagenome | Endosphere |
| 14 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 15 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 16 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 17 | 3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Metagenome | Rhizosphere |
| 18 | 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Metagenome | Rhizosphere |
| 19 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 20 | 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Metagenome | Rhizosphere |
| 21 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 22 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 23 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 24 | 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Metagenome | Rhizosphere |
| 25 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 26 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 27 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 28 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 29 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 30 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 31 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 32 | 3300006195 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 | Metagenome | Endosphere |
| 33 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 34 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 35 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 37 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 38 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 39 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 40 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 41 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 42 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 43 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 44 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 45 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 46 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 47 | 3300025246 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) | Metagenome | Unclassified |
| 48 | 3300025250 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) | Metagenome | Unclassified |
| 49 | 3300025273 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 50 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 51 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 52 | 3300025298 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 53 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 54 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 55 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300029957 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG | Metagenome | Rhizosphere |
| 72 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 73 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 74 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 75 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 76 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 77 | 3300041997 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 | Metagenome | Rhizosphere |
| 78 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 79 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 80 | 3300044901 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R | Metagenome | Rhizosphere |
| 81 | 3300046499 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere | Metagenome | Rhizosphere |
| 82 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 83 | 3300046809 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere | Metagenome | Rhizosphere |
| 84 | 3300047318 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere | Metagenome | Rhizosphere |
| 85 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 86 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 87 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 88 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 89 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 90 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 91 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 92 | 3300049703 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control | Metagenome | Rhizosphere |
| 93 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 94 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 95 | 3300050005 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought | Metagenome | Rhizosphere |
| 96 | 3300050493 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation | Metagenome | Endosphere |
| 97 | 3300050510 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation | Metagenome | Rhizosphere |
| 98 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 99 | 3300053130 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere | Metagenome | Endosphere |
| 100 | 3300053131 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere | Metagenome | Endosphere |
| 101 | 3300053151 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere | Metagenome | Endosphere |
| 102 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 103 | 3300053158 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere | Metagenome | Endosphere |
| 104 | 2599185353 | Staphylococcus sp. NFPP34 | Isolate | Rhizoplane |
| 105 | 2600254943 | Staphylococcus pasteuri NFIX07 | Isolate | Rhizoplane |
| 106 | 2840677318 | Chitinophaga alhagiae T22 | Isolate | Unclassified |
| 107 | 2881955468 | Edaphocola flava HME-24 | Isolate | Rhizosphere |
| 108 | 2883068021 | Chitinophaga rhizosphaerae T16R-86 | Isolate | Rhizosphere |
| 109 | 2896085136 | Chitinophaga alhagiae T22 | Isolate | Unclassified |
| 110 | 2929921140 | Chitinophaga sp. R-72609 Hybrid assembly | Isolate | Unclassified |
| 111 | 8003151029 | Chitinophaga sp. GbtcB8 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 94.56 |
| Metatranscriptomes | 0 |
| Isolates | 5.44 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 14.97 |
| Nodule | 0 |
| Rhizoplane | 2.72 |
| Rhizosphere | 74.83 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 2.04 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0500616_0002144 | 3300053153 | Bacteria | 17082 |
| 2 | SwRhRL2b_contig_1663050 | 2162886007 | Bacteria | 482194 |
| 3 | JGI24740J21852_10002103 | 3300001979 | Bacteria | 9108 |
| 4 | JGI24739J22299_10018751 | 3300001989 | Bacteria | 2483 |
| 5 | JGI25154J39366_1000007 | 3300002738 | Bacteria | 335932 |
| 6 | JGI25153J46596_10002940 | 3300003215 | Bacteria | 9642 |
| 7 | rootL2_10088285 | 3300003322 | Bacteria | 4992 |
| 8 | rootH1_10090389 | 3300003323 | Bacteria | 8106 |
| 9 | rootH1_10102767 | 3300003323 | Bacteria | 3167 |
| 10 | JGI25160J50197_1013928 | 3300003354 | Bacteria | 2716 |
| 11 | Ga0055526_1016377 | 3300003771 | Bacteria | 2907 |
| 12 | Ga0055528_1007321 | 3300003790 | Bacteria | 4896 |
| 13 | Ga0055530_10003713 | 3300003791 | Bacteria | 8490 |
| 14 | Ga0055531_10000085 | 3300003794 | Bacteria | 102372 |
| 15 | Ga0065165_1000010 | 3300005262 | Bacteria | 323737 |
| 16 | Ga0065704_10070140 | 3300005289 | Bacteria | 482257 |
| 17 | Ga0070683_100005156 | 3300005329 | Bacteria | 10867 |
| 18 | Ga0070666_10022716 | 3300005335 | Bacteria | 4077 |
| 19 | Ga0068868_100114133 | 3300005338 | Viruses | 2198 |
| 20 | Ga0070675_100031745 | 3300005354 | Bacteria | 4272 |
| 21 | Ga0070673_100065818 | 3300005364 | Bacteria | 2892 |
| 22 | Ga0070659_100005889 | 3300005366 | Bacteria | 8831 |
| 23 | Ga0070663_100095681 | 3300005455 | Bacteria | 2208 |
| 24 | Ga0070681_10009168 | 3300005458 | Bacteria | 9723 |
| 25 | Ga0070681_10142199 | 3300005458 | Bacteria | 2329 |
| 26 | Ga0068867_100007221 | 3300005459 | Bacteria | 7855 |
| 27 | Ga0070679_100054498 | 3300005530 | Bacteria | 3981 |
| 28 | Ga0068853_100016658 | 3300005539 | Bacteria | 6053 |
| 29 | Ga0070665_100000442 | 3300005548 | Bacteria | 60619 |
| 30 | Ga0068855_100000399 | 3300005563 | Bacteria | 53597 |
| 31 | Ga0068855_100005141 | 3300005563 | Bacteria | 15959 |
| 32 | Ga0068855_100026010 | 3300005563 | Bacteria | 7000 |
| 33 | Ga0068856_100011270 | 3300005614 | Bacteria | 8678 |
| 34 | Ga0068856_100042368 | 3300005614 | Bacteria | 4478 |
| 35 | Ga0068852_100040258 | 3300005616 | Bacteria | 3941 |
| 36 | Ga0081539_10001169 | 3300005985 | Bacteria | 47510 |
| 37 | Ga0075366_10008152 | 3300006195 | Bacteria | 5813 |
| 38 | Ga0075431_100049655 | 3300006847 | Bacteria | 4325 |
| 39 | Ga0105240_10000078 | 3300009093 | Bacteria | 196646 |
| 40 | Ga0111539_10067610 | 3300009094 | Bacteria | 4219 |
| 41 | Ga0105241_10157077 | 3300009174 | Bacteria | 1866 |
| 42 | Ga0105237_10001165 | 3300009545 | Bacteria | 35143 |
| 43 | Ga0105239_10000431 | 3300010375 | Bacteria | 61098 |
| 44 | Ga0105239_10037742 | 3300010375 | Bacteria | 5295 |
| 45 | Ga0157373_10003825 | 3300013100 | Bacteria | 11378 |
| 46 | Ga0157373_10058573 | 3300013100 | Bacteria | 2731 |
| 47 | Ga0157371_10001708 | 3300013102 | Bacteria | 22354 |
| 48 | Ga0157371_10003164 | 3300013102 | Bacteria | 15153 |
| 49 | Ga0157371_10007282 | 3300013102 | Bacteria | 8988 |
| 50 | Ga0157371_10008068 | 3300013102 | Bacteria | 8420 |
| 51 | Ga0157371_10011431 | 3300013102 | Bacteria | 6840 |
| 52 | Ga0157371_10053225 | 3300013102 | Bacteria | 2874 |
| 53 | Ga0157371_10095938 | 3300013102 | Bacteria | 2101 |
| 54 | Ga0157370_10000956 | 3300013104 | Bacteria | 36647 |
| 55 | Ga0157370_10002557 | 3300013104 | Bacteria | 21831 |
| 56 | Ga0157370_10005134 | 3300013104 | Bacteria | 14766 |
| 57 | Ga0157370_10005293 | 3300013104 | Bacteria | 14491 |
| 58 | Ga0157370_10106146 | 3300013104 | Bacteria | 2629 |
| 59 | Ga0157369_10002663 | 3300013105 | Bacteria | 21313 |
| 60 | Ga0157369_10005343 | 3300013105 | Bacteria | 14966 |
| 61 | Ga0157374_10056493 | 3300013296 | Bacteria | 3664 |
| 62 | Ga0157374_10129833 | 3300013296 | Bacteria | 2438 |
| 63 | Ga0163162_10002976 | 3300013306 | Bacteria | 16179 |
| 64 | Ga0157372_10015677 | 3300013307 | Bacteria | 8127 |
| 65 | Ga0157372_10143569 | 3300013307 | Bacteria | 2753 |
| 66 | Ga0163163_10119015 | 3300014325 | Bacteria | 2674 |
| 67 | Ga0209646_1000002 | 3300025246 | Bacteria | 1425781 |
| 68 | Ga0209026_1000086 | 3300025250 | Bacteria | 185551 |
| 69 | Ga0209673_1000082 | 3300025273 | Bacteria | 219716 |
| 70 | Ga0209564_1003432 | 3300025295 | Bacteria | 10861 |
| 71 | Ga0209758_1002611 | 3300025297 | Bacteria | 17961 |
| 72 | Ga0209050_1000555 | 3300025298 | Bacteria | 61428 |
| 73 | Ga0207426_1000493 | 3300025302 | Bacteria | 59050 |
| 74 | Ga0209257_1000001 | 3300025304 | Bacteria | 2274655 |
| 75 | Ga0209257_1007531 | 3300025304 | Bacteria | 6541 |
| 76 | Ga0207647_10028451 | 3300025904 | Bacteria | 3629 |
| 77 | Ga0207705_10002548 | 3300025909 | Bacteria | 14024 |
| 78 | Ga0207695_10000064 | 3300025913 | Bacteria | 346010 |
| 79 | Ga0207695_10014224 | 3300025913 | Bacteria | 9439 |
| 80 | Ga0207695_10111187 | 3300025913 | Bacteria | 2719 |
| 81 | Ga0207671_10000030 | 3300025914 | Bacteria | 248197 |
| 82 | Ga0207660_10003854 | 3300025917 | Bacteria | 9777 |
| 83 | Ga0207657_10000872 | 3300025919 | Bacteria | 31816 |
| 84 | Ga0207657_10098104 | 3300025919 | Bacteria | 2435 |
| 85 | Ga0207657_10105043 | 3300025919 | Bacteria | 2339 |
| 86 | Ga0207649_10058594 | 3300025920 | Bacteria | 2412 |
| 87 | Ga0207652_10000228 | 3300025921 | Bacteria | 58720 |
| 88 | Ga0207652_10022299 | 3300025921 | Bacteria | 5237 |
| 89 | Ga0207659_10018839 | 3300025926 | Bacteria | 4531 |
| 90 | Ga0207690_10075674 | 3300025932 | Bacteria | 2335 |
| 91 | Ga0207706_10005563 | 3300025933 | Bacteria | 11747 |
| 92 | Ga0207667_10000312 | 3300025949 | Bacteria | 67340 |
| 93 | Ga0207667_10180466 | 3300025949 | Bacteria | 2168 |
| 94 | Ga0207678_10013732 | 3300026067 | Bacteria | 7113 |
| 95 | Ga0207648_10013767 | 3300026089 | Bacteria | 7507 |
| 96 | Ga0207674_10022907 | 3300026116 | Bacteria | 6701 |
| 97 | Ga0207674_10041696 | 3300026116 | Bacteria | 4745 |
| 98 | Ga0207674_10146944 | 3300026116 | Bacteria | 2316 |
| 99 | Ga0268266_10000845 | 3300028379 | Bacteria | 39924 |
| 100 | Ga0265324_10007521 | 3300029957 | Bacteria | 4407 |
| 101 | Ga0265327_10000026 | 3300031251 | Bacteria | 379288 |
| 102 | Ga0265327_10000137 | 3300031251 | Bacteria | 160704 |
| 103 | Ga0265327_10001558 | 3300031251 | Bacteria | 28149 |
| 104 | Ga0395899_0013279 | 3300037312 | Bacteria | 6302 |
| 105 | Ga0395899_0043494 | 3300037312 | Bacteria | 3350 |
| 106 | Ga0395900_0008777 | 3300037418 | Bacteria | 10386 |
| 107 | Ga0395898_0025804 | 3300037466 | Bacteria | 5917 |
| 108 | Ga0395898_0112715 | 3300037466 | Unclassified | 2606 |
| 109 | Ga0395901_0002103 | 3300038443 | Bacteria | 20429 |
| 110 | Ga0395901_0068958 | 3300038443 | Bacteria | 3683 |
| 111 | Ga0439431_0000340 | 3300041997 | Bacteria | 9775 |
| 112 | Ga0453684_0036901 | 3300044712 | Bacteria | 6723 |
| 113 | Ga0466970_0023647 | 3300044765 | Bacteria | 3211 |
| 114 | Ga0466960_0059014 | 3300044901 | Bacteria | 1876 |
| 115 | Ga0495594_0073275 | 3300046499 | Unclassified | 1906 |
| 116 | Ga0495668_0000057 | 3300046616 | Bacteria | 196557 |
| 117 | Ga0495668_0000878 | 3300046616 | Bacteria | 33873 |
| 118 | Ga0495668_0006718 | 3300046616 | Bacteria | 7491 |
| 119 | Ga0495600_0017098 | 3300046809 | Bacteria | 4611 |
| 120 | Ga0495636_0000062 | 3300047318 | Bacteria | 47016 |
| 121 | Ga0495686_0001275 | 3300047472 | Bacteria | 28512 |
| 122 | Ga0496114_0000420 | 3300048917 | Bacteria | 31391 |
| 123 | Ga0496115_0069945 | 3300048918 | Bacteria | 2844 |
| 124 | Ga0496126_0095626 | 3300048929 | Bacteria | 2605 |
| 125 | Ga0501034_0066634 | 3300049571 | Bacteria | 3614 |
| 126 | Ga0501038_0077895 | 3300049574 | Bacteria | 2798 |
| 127 | Ga0501047_0012511 | 3300049581 | Bacteria | 8037 |
| 128 | Ga0501219_000173 | 3300049703 | Bacteria | 12003 |
| 129 | Ga0501035_0110701 | 3300049822 | Bacteria | 2407 |
| 130 | Ga0501044_0179179 | 3300049823 | Bacteria | 2087 |
| 131 | Ga0501284_00032 | 3300050005 | Bacteria | 64343 |
| 132 | nmdc:mga0k408_7338_c1 | 3300050493 | Bacteria | 5888 |
| 133 | nmdc:mga06r32_36948_c1 | 3300050510 | Bacteria | 4620 |
| 134 | nmdc:mga08y16_38709_c1 | 3300050511 | Bacteria | 5005 |
| 135 | Ga0500642_0020219 | 3300053130 | Bacteria | 2613 |
| 136 | Ga0500652_014903 | 3300053131 | Bacteria | 2793 |
| 137 | Ga0500604_0006745 | 3300053151 | Unclassified | 3039 |
| 138 | Ga0500622_0000077 | 3300053156 | Bacteria | 108558 |
| 139 | Ga0500627_0003721 | 3300053158 | Bacteria | 4776 |
| 140 | 2600198059 | 2599185353 | Bacteria | 2219443 |
| 141 | 2600400837 | 2600254943 | Bacteria | 2613887 |
| 142 | 2840677515 | 2840677318 | Bacteria | 2664183 |
| 143 | 2881956127 | 2881955468 | Bacteria | 3545609 |
| 144 | 2883072900 | 2883068021 | Bacteria | 6192739 |
| 145 | 2896085333 | 2896085136 | Bacteria | 6129793 |
| 146 | 2929923487 | 2929921140 | Bacteria | 8649150 |
| 147 | 8003152889 | 8003151029 | Bacteria | 8187759 |
| 148 | Ga0500616_0002144 | |||
| 149 | SwRhRL2b_contig_1663050 | |||
| 150 | JGI24740J21852_10002103 | |||
| 151 | JGI24739J22299_10018751 | |||
| 152 | JGI25154J39366_1000007 | |||
| 153 | JGI25153J46596_10002940 | |||
| 154 | rootL2_10088285 | |||
| 155 | rootH1_10090389 | |||
| 156 | rootH1_10102767 | |||
| 157 | JGI25160J50197_1013928 | |||
| 158 | Ga0055526_1016377 | |||
| 159 | Ga0055528_1007321 | |||
| 160 | Ga0055530_10003713 | |||
| 161 | Ga0055531_10000085 | |||
| 162 | Ga0065165_1000010 | |||
| 163 | Ga0065704_10070140 | |||
| 164 | Ga0070683_100005156 | |||
| 165 | Ga0070666_10022716 | |||
| 166 | Ga0068868_100114133 | |||
| 167 | Ga0070675_100031745 | |||
| 168 | Ga0070673_100065818 | |||
| 169 | Ga0070659_100005889 | |||
| 170 | Ga0070663_100095681 | |||
| 171 | Ga0070681_10009168 | |||
| 172 | Ga0070681_10142199 | |||
| 173 | Ga0068867_100007221 | |||
| 174 | Ga0070679_100054498 | |||
| 175 | Ga0068853_100016658 | |||
| 176 | Ga0070665_100000442 | |||
| 177 | Ga0068855_100000399 | |||
| 178 | Ga0068855_100005141 | |||
| 179 | Ga0068855_100026010 | |||
| 180 | Ga0068856_100011270 | |||
| 181 | Ga0068856_100042368 | |||
| 182 | Ga0068852_100040258 | |||
| 183 | Ga0081539_10001169 | |||
| 184 | Ga0075366_10008152 | |||
| 185 | Ga0075431_100049655 | |||
| 186 | Ga0105240_10000078 | |||
| 187 | Ga0111539_10067610 | |||
| 188 | Ga0105241_10157077 | |||
| 189 | Ga0105237_10001165 | |||
| 190 | Ga0105239_10000431 | |||
| 191 | Ga0105239_10037742 | |||
| 192 | Ga0157373_10003825 | |||
| 193 | Ga0157373_10058573 | |||
| 194 | Ga0157371_10001708 | |||
| 195 | Ga0157371_10003164 | |||
| 196 | Ga0157371_10007282 | |||
| 197 | Ga0157371_10008068 | |||
| 198 | Ga0157371_10011431 | |||
| 199 | Ga0157371_10053225 | |||
| 200 | Ga0157371_10095938 | |||
| 201 | Ga0157370_10000956 | |||
| 202 | Ga0157370_10002557 | |||
| 203 | Ga0157370_10005134 | |||
| 204 | Ga0157370_10005293 | |||
| 205 | Ga0157370_10106146 | |||
| 206 | Ga0157369_10002663 | |||
| 207 | Ga0157369_10005343 | |||
| 208 | Ga0157374_10056493 | |||
| 209 | Ga0157374_10129833 | |||
| 210 | Ga0163162_10002976 | |||
| 211 | Ga0157372_10015677 | |||
| 212 | Ga0157372_10143569 | |||
| 213 | Ga0163163_10119015 | |||
| 214 | Ga0209646_1000002 | |||
| 215 | Ga0209026_1000086 | |||
| 216 | Ga0209673_1000082 | |||
| 217 | Ga0209564_1003432 | |||
| 218 | Ga0209758_1002611 | |||
| 219 | Ga0209050_1000555 | |||
| 220 | Ga0207426_1000493 | |||
| 221 | Ga0209257_1000001 | |||
| 222 | Ga0209257_1007531 | |||
| 223 | Ga0207647_10028451 | |||
| 224 | Ga0207705_10002548 | |||
| 225 | Ga0207695_10000064 | |||
| 226 | Ga0207695_10014224 | |||
| 227 | Ga0207695_10111187 | |||
| 228 | Ga0207671_10000030 | |||
| 229 | Ga0207660_10003854 | |||
| 230 | Ga0207657_10000872 | |||
| 231 | Ga0207657_10098104 | |||
| 232 | Ga0207657_10105043 | |||
| 233 | Ga0207649_10058594 | |||
| 234 | Ga0207652_10000228 | |||
| 235 | Ga0207652_10022299 | |||
| 236 | Ga0207659_10018839 | |||
| 237 | Ga0207690_10075674 | |||
| 238 | Ga0207706_10005563 | |||
| 239 | Ga0207667_10000312 | |||
| 240 | Ga0207667_10180466 | |||
| 241 | Ga0207678_10013732 | |||
| 242 | Ga0207648_10013767 | |||
| 243 | Ga0207674_10022907 | |||
| 244 | Ga0207674_10041696 | |||
| 245 | Ga0207674_10146944 | |||
| 246 | Ga0268266_10000845 | |||
| 247 | Ga0265324_10007521 | |||
| 248 | Ga0265327_10000026 | |||
| 249 | Ga0265327_10000137 | |||
| 250 | Ga0265327_10001558 | |||
| 251 | Ga0395899_0013279 | |||
| 252 | Ga0395899_0043494 | |||
| 253 | Ga0395900_0008777 | |||
| 254 | Ga0395898_0025804 | |||
| 255 | Ga0395898_0112715 | |||
| 256 | Ga0395901_0002103 | |||
| 257 | Ga0395901_0068958 | |||
| 258 | Ga0439431_0000340 | |||
| 259 | Ga0453684_0036901 | |||
| 260 | Ga0466970_0023647 | |||
| 261 | Ga0466960_0059014 | |||
| 262 | Ga0495594_0073275 | |||
| 263 | Ga0495668_0000057 | |||
| 264 | Ga0495668_0000878 | |||
| 265 | Ga0495668_0006718 | |||
| 266 | Ga0495600_0017098 | |||
| 267 | Ga0495636_0000062 | |||
| 268 | Ga0495686_0001275 | |||
| 269 | Ga0496114_0000420 | |||
| 270 | Ga0496115_0069945 | |||
| 271 | Ga0496126_0095626 | |||
| 272 | Ga0501034_0066634 | |||
| 273 | Ga0501038_0077895 | |||
| 274 | Ga0501047_0012511 | |||
| 275 | Ga0501219_000173 | |||
| 276 | Ga0501035_0110701 | |||
| 277 | Ga0501044_0179179 | |||
| 278 | Ga0501284_00032 | |||
| 279 | nmdc:mga0k408_7338_c1 | |||
| 280 | nmdc:mga06r32_36948_c1 | |||
| 281 | nmdc:mga08y16_38709_c1 | |||
| 282 | Ga0500642_0020219 | |||
| 283 | Ga0500652_014903 | |||
| 284 | Ga0500604_0006745 | |||
| 285 | Ga0500622_0000077 | |||
| 286 | Ga0500627_0003721 | |||
| 287 | 2600198059 | |||
| 288 | 2600400837 | |||
| 289 | 2840677515 | |||
| 290 | 2881956127 | |||
| 291 | 2883072900 | |||
| 292 | 2896085333 | |||
| 293 | 2929923487 | |||
| 294 | 8003152889 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 1m65-assembly1.cif.gz_A | ycdx protein | 0.8815 | 318 | 553 |
| 3au6-assembly1.cif.gz_A | dna polymerase x from thermus thermophilus hb8 ternary complex with primer/template dna and ddgtp | 0.8661 | 1 | 551 |
| 3au6-assembly1.cif.gz_A | dna polymerase x from thermus thermophilus hb8 ternary complex with primer/template dna and ddgtp | 0.8561 | 1 | 551 |
| 1m65-assembly1.cif.gz_A | ycdx protein | 0.8354 | 318 | 553 |
| 1pb0-assembly1.cif.gz_A | ycdx protein in autoinhibited state | 0.8303 | 317 | 553 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 2w9mA05 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases | 0.9699 | 310 | 555 | 3.20.20.140 |
| af_Q2FZD4_322_570_3.20.20.140 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases | 0.9674 | 311 | 557 | 3.20.20.140 |
| 2w9mB02 | Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain | 0.9547 | 86 | 152 | 1.10.150.20 |
| 3au6A05 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases | 0.9507 | 308 | 551 | 3.20.20.140 |
| af_Q2FZD4_322_570_3.20.20.140 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases | 0.9484 | 311 | 557 | 3.20.20.140 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A259HI57-F1-model_v4 | Histidinol-phosphatase | 0.9899 | 322 | 556 |
GO:0005829
GO:0008270 GO:0042578 |
| AF-A0A3D3CWE4-F1-model_v4 | Histidinol-phosphatase | 0.9893 | 275 | 551 |
GO:0005829
GO:0008270 GO:0042578 GO:0071978 |
| AF-A0A4Q3ST74-F1-model_v4 | PHP domain-containing protein | 0.9849 | 373 | 556 |
GO:0005829
GO:0008270 GO:0042578 GO:0071978 |
| AF-A0A7C3XT46-F1-model_v4 | PHP domain-containing protein | 0.9802 | 350 | 554 |
GO:0005829
GO:0008270 GO:0042578 GO:0071978 |
| AF-A0A4Q3ND94-F1-model_v4 | deleted | 0.9794 | 451 | 556 |
|