F201833

General Info

Members Datasets Scaffolds Average Seq Length
147 124 294 383

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2904690495|2904697319
Length 406
Sequence SAQASDINSAAVDLQPVLAAVDAVLGAQPRPVELHEPRFGARERELVLDCIDTNWVSSAGQYVTRFEQMVAKVAGARHAVAIVNGTAALHAALLLEGVKPNDEVLLPAITFVATANAVSHAGAVPHFVDSTWDTLGIDPVALDKHLEAIAVQRDGGWVNRQTGRRLRAVVPVHIFGHPVDMAALGAVAAKYGLVVVEDATESLGSTWNGQGCGTFGHSAVLSFNGNKIVTTGGGGMILTDDDDHARHARHFTSTAKKSHAWAFEHDEVAYNYRLPNINAALGCAQMERLEGMVAAKRELAERYLQAFSAFPWAKIYREPKGAQSNYWLNTLVLDRDYAAERDRLLAALHGHGIRARPLWTPMHMLPMYRDCPRAPLAVAEDMSARCINLPSSPFLAEAGRTNANQR

Samples

Sample ID Description Type Environment
1 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
2 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
3 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
4 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
5 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
6 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
7 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
8 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
9 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
10 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
22 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
23 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
24 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
25 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
26 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
27 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
30 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
31 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
36 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
37 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
38 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
39 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
41 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
42 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
43 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
44 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
46 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
48 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027364 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
61 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
62 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
63 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
64 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
65 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
66 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
67 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
68 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
69 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
70 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
71 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
72 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
73 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
74 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
75 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
76 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
77 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
78 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
79 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
80 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
81 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
82 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
83 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
84 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
93 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
94 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
95 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
98 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
99 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
100 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
101 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
102 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
103 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
104 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
105 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
106 2904690495 Bradyrhizobium ivorense CI-1B Isolate Nodule
107 2511231003 Herbaspirillum sp. CF444 Isolate Rhizosphere
108 2512564013 Brevibacillus sp. BC25 Isolate Rhizosphere
109 2684623219 Planctomyces sp. SH-PL14 Isolate Unclassified
110 2824679649 Bradyrhizobium sp.HAMBI 2116 Isolate Unclassified
111 2908756301 Bradyrhizobium ivorense CI-41S Isolate Nodule
112 2924186466 Sinorhizobium meliloti USDA1389 Isolate Nodule
113 2935777560 Bradyrhizobium sp. LB14.3 Isolate Nodule
114 2935785616 Bradyrhizobium sp. LB5.2 Isolate Nodule
115 2935793552 Bradyrhizobium sp. LB8.2 Isolate Nodule
116 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
117 2939593269 Lysinibacillus parviboronicapiens 736 Isolate Rhizosphere
118 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
119 8006926726 Bradyrhizobium guangdongense SM32 Isolate Unclassified
120 8006984368 Bradyrhizobium sp. SRL28 Isolate Unclassified
121 8019547302 Bradyrhizobium sp. LB1.3 Isolate Nodule
122 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
123 8056673599 Bradyrhizobium hereditatis WSM 1738 Isolate Nodule
124 8056689827 Bradyrhizobium semiaridum WSM 1704 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 87.07
Metatranscriptomes 0
Isolates 12.93

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.65
Nodule 6.12
Rhizoplane 2.04
Rhizosphere 64.63
Stem 0
Stem Tuber 0
Unclassified 3.4

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25155J39150_1000185 3300002704 Bacteria 26790
2 JGI25156J39149_1001690 3300002705 Bacteria 8887
3 JGI25154J39366_1000090 3300002738 Bacteria 81884
4 JGI25159J45721_1000039 3300002987 Bacteria 69707
5 JGI25159J45721_1000074 3300002987 Bacteria 48266
6 JGI25160J50197_1000106 3300003354 Bacteria 80449
7 JGI25161J50226_1000041 3300003374 Bacteria 124485
8 Ga0055532_1000541 3300003758 Bacteria 16217
9 Ga0055536_1011203 3300003781 Bacteria 3468
10 Ga0055543_1000092 3300004625 Bacteria 78538
11 Ga0065165_1000492 3300005262 Bacteria 61002
12 Ga0070668_100198294 3300005347 Bacteria 1647
13 Ga0070709_10128986 3300005434 Bacteria 1724
14 Ga0070681_10008107 3300005458 Bacteria 10278
15 Ga0070679_100001565 3300005530 Bacteria 20478
16 Ga0070679_100199720 3300005530 Bacteria 1966
17 Ga0070696_100113247 3300005546 Bacteria 1955
18 Ga0070665_100004270 3300005548 Bacteria 15023
19 Ga0068855_100001141 3300005563 Bacteria 32922
20 Ga0068855_100059690 3300005563 Bacteria 4462
21 Ga0068855_100102937 3300005563 Bacteria 3286
22 Ga0068855_100217149 3300005563 Bacteria 2146
23 Ga0068852_100004731 3300005616 Bacteria 9661
24 Ga0068860_100388108 3300005843 Unclassified 1379
25 Ga0081455_10018402 3300005937 Bacteria 6658
26 Ga0081540_1001199 3300005983 Bacteria 22703
27 Ga0075365_10000689 3300006038 Bacteria 13580
28 Ga0075363_100033499 3300006048 Bacteria 2676
29 Ga0075367_10033258 3300006178 Bacteria 2971
30 Ga0075369_10000376 3300006186 Bacteria 13358
31 Ga0075434_100054071 3300006871 Bacteria 3989
32 Ga0075436_100003437 3300006914 Bacteria 10856
33 Ga0105240_10005988 3300009093 Bacteria 17981
34 Ga0105240_10008884 3300009093 Bacteria 14300
35 Ga0105240_10114388 3300009093 Bacteria 3259
36 Ga0105241_10140270 3300009174 Bacteria 1967
37 Ga0105237_10001997 3300009545 Bacteria 25946
38 Ga0105237_10063171 3300009545 Bacteria 3700
39 Ga0105238_10054132 3300009551 Bacteria 4031
40 Ga0105239_10050246 3300010375 Bacteria 4574
41 Ga0157373_10000162 3300013100 Bacteria 54140
42 Ga0157374_10033540 3300013296 Bacteria 4684
43 Ga0157378_10050787 3300013297 Bacteria 3690
44 Ga0213876_10006680 3300021384 Bacteria 6297
45 Ga0209435_100066 3300025206 Bacteria 71278
46 Ga0209436_100241 3300025208 Bacteria 25217
47 Ga0209147_100101 3300025229 Bacteria 161976
48 Ga0209646_1000133 3300025246 Bacteria 125401
49 Ga0209026_1001765 3300025250 Bacteria 8950
50 Ga0209759_1000187 3300025256 Bacteria 100012
51 Ga0209130_1000099 3300025284 Bacteria 141717
52 Ga0209676_1000026 3300025292 Bacteria 574599
53 Ga0209758_1001785 3300025297 Bacteria 23762
54 Ga0209050_1000366 3300025298 Bacteria 86616
55 Ga0209050_1027854 3300025298 Bacteria 1850
56 Ga0207426_1000062 3300025302 Bacteria 362040
57 Ga0207654_10010613 3300025911 Bacteria 4691
58 Ga0207707_10007688 3300025912 Bacteria 9388
59 Ga0207695_10000029 3300025913 Bacteria 548364
60 Ga0207695_10007158 3300025913 Bacteria 14277
61 Ga0207695_10146555 3300025913 Bacteria 2304
62 Ga0207671_10004102 3300025914 Bacteria 14094
63 Ga0207652_10013919 3300025921 Bacteria 6512
64 Ga0207694_10016642 3300025924 Bacteria 5556
65 Ga0207667_10001982 3300025949 Bacteria 25664
66 Ga0207667_10046124 3300025949 Bacteria 4615
67 Ga0207668_10120788 3300025972 Bacteria 1984
68 Ga0207698_10226434 3300026142 Bacteria 1694
69 Ga0209967_1009930 3300027364 Bacteria 1323
70 Ga0268266_10009771 3300028379 Bacteria 8439
71 Ga0268264_10289032 3300028381 Unclassified 1539
72 Ga0265328_10004881 3300031239 Bacteria 5776
73 Ga0265327_10001641 3300031251 Bacteria 26974
74 Ga0265327_10060207 3300031251 Bacteria 1942
75 Ga0307416_100016477 3300032002 Bacteria 5140
76 Ga0373956_0000139 3300035119 Bacteria 26071
77 Ga0373947_0166189 3300035725 Unclassified 1429
78 Ga0400486_17562 3300038742 Bacteria 29310
79 Ga0436365_1488935 3300039437 Bacteria 11588
80 Ga0439456_000102 3300042013 Bacteria 28808
81 Ga0439463_004028 3300042016 Bacteria 3695
82 Ga0450906_000038 3300042145 Bacteria 21445
83 Ga0453683_0000302 3300044673 Bacteria 62266
84 Ga0453683_0001863 3300044673 Bacteria 17291
85 Ga0453684_0005187 3300044712 Bacteria 26211
86 Ga0453684_0008995 3300044712 Bacteria 17643
87 Ga0453684_0009056 3300044712 Bacteria 17566
88 Ga0453684_0065908 3300044712 Bacteria 4615
89 Ga0453684_0102877 3300044712 Unclassified 3491
90 Ga0451576_0000491 3300045051 Bacteria 87622
91 Ga0451576_0003091 3300045051 Bacteria 23347
92 Ga0495638_0008779 3300046460 Bacteria 7140
93 Ga0495668_0033447 3300046616 Bacteria 2889
94 Ga0495625_0121839 3300046660 Bacteria 1774
95 Ga0495624_0182904 3300046690 Unclassified 1277
96 Ga0495671_0062689 3300046692 Bacteria 1832
97 Ga0496104_0180899 3300048907 Bacteria 2019
98 Ga0496112_0308860 3300048915 Bacteria 1526
99 Ga0496115_0261404 3300048918 Bacteria 1423
100 Ga0496121_0220465 3300048924 Bacteria 1336
101 Ga0496122_0034170 3300048925 Bacteria 4167
102 Ga0496125_0002604 3300048928 Bacteria 23159
103 Ga0501031_0057909 3300049568 Bacteria 2525
104 Ga0501036_0030661 3300049572 Bacteria 4542
105 Ga0501038_0041968 3300049574 Bacteria 3986
106 Ga0501039_0009441 3300049575 Bacteria 7437
107 Ga0501041_0038742 3300049577 Bacteria 2891
108 Ga0501042_0174613 3300049578 Bacteria 1550
109 Ga0501046_0113534 3300049580 Bacteria 2068
110 Ga0501047_0048471 3300049581 Bacteria 4102
111 Ga0501047_0090376 3300049581 Bacteria 2939
112 Ga0501047_0239530 3300049581 Bacteria 1665
113 Ga0501075_0117390 3300049591 Bacteria 2023
114 Ga0501076_0055094 3300049592 Bacteria 3153
115 Ga0501081_0025515 3300049743 Bacteria 3976
116 Ga0501035_0019134 3300049822 Bacteria 6304
117 Ga0501044_0055425 3300049823 Bacteria 4072
118 Ga0501044_0073775 3300049823 Bacteria 3468
119 Ga0501044_0077575 3300049823 Bacteria 3369
120 Ga0501045_0057346 3300049824 Bacteria 2850
121 nmdc:mga0n895_102046_c1 3300050512 Bacteria 2879
122 nmdc:mga08x19_6894_c1 3300050514 Bacteria 6747
123 nmdc:mga0sz30_1884_c1 3300050516 Bacteria 7474
124 Ga0495601_0039810 3300053077 Bacteria 2944
125 Ga0500593_000101 3300053117 Bacteria 32622
126 Ga0500645_000257 3300053730 Bacteria 38752
127 Ga0501084_0008955 3300054114 Bacteria 8281
128 Ga0501082_0082797 3300060353 Bacteria 2768
129 2904697319 2904690495 Bacteria 9412302
130 2511252037 2511231003 Bacteria 5606035
131 2512640268 2512564013 Bacteria 6286191
132 2687236294 2684623219 Bacteria 8442773
133 2824680025 2824679649 Bacteria 8248951
134 2908762282 2908756301 Bacteria 8864324
135 2924192070 2924186466 Bacteria 6876637
136 2935784629 2935777560 Bacteria 8077691
137 2935790610 2935785616 Bacteria 7962367
138 2935798982 2935793552 Bacteria 8012592
139 2938652556 2938649242 Bacteria 7118381
140 2939595120 2939593269 Bacteria 4798695
141 2968559276 2968558590 Bacteria 6956864
142 8006933031 8006926726 Bacteria 6749210
143 8006990445 8006984368 Bacteria 9651211
144 8019547695 8019547302 Bacteria 7996444
145 8054471450 8054465665 Bacteria 7323556
146 8056681182 8056673599 Bacteria 7871253
147 8056694369 8056689827 Bacteria 6712655
148 JGI25155J39150_1000185
149 JGI25156J39149_1001690
150 JGI25154J39366_1000090
151 JGI25159J45721_1000039
152 JGI25159J45721_1000074
153 JGI25160J50197_1000106
154 JGI25161J50226_1000041
155 Ga0055532_1000541
156 Ga0055536_1011203
157 Ga0055543_1000092
158 Ga0065165_1000492
159 Ga0070668_100198294
160 Ga0070709_10128986
161 Ga0070681_10008107
162 Ga0070679_100001565
163 Ga0070679_100199720
164 Ga0070696_100113247
165 Ga0070665_100004270
166 Ga0068855_100001141
167 Ga0068855_100059690
168 Ga0068855_100102937
169 Ga0068855_100217149
170 Ga0068852_100004731
171 Ga0068860_100388108
172 Ga0081455_10018402
173 Ga0081540_1001199
174 Ga0075365_10000689
175 Ga0075363_100033499
176 Ga0075367_10033258
177 Ga0075369_10000376
178 Ga0075434_100054071
179 Ga0075436_100003437
180 Ga0105240_10005988
181 Ga0105240_10008884
182 Ga0105240_10114388
183 Ga0105241_10140270
184 Ga0105237_10001997
185 Ga0105237_10063171
186 Ga0105238_10054132
187 Ga0105239_10050246
188 Ga0157373_10000162
189 Ga0157374_10033540
190 Ga0157378_10050787
191 Ga0213876_10006680
192 Ga0209435_100066
193 Ga0209436_100241
194 Ga0209147_100101
195 Ga0209646_1000133
196 Ga0209026_1001765
197 Ga0209759_1000187
198 Ga0209130_1000099
199 Ga0209676_1000026
200 Ga0209758_1001785
201 Ga0209050_1000366
202 Ga0209050_1027854
203 Ga0207426_1000062
204 Ga0207654_10010613
205 Ga0207707_10007688
206 Ga0207695_10000029
207 Ga0207695_10007158
208 Ga0207695_10146555
209 Ga0207671_10004102
210 Ga0207652_10013919
211 Ga0207694_10016642
212 Ga0207667_10001982
213 Ga0207667_10046124
214 Ga0207668_10120788
215 Ga0207698_10226434
216 Ga0209967_1009930
217 Ga0268266_10009771
218 Ga0268264_10289032
219 Ga0265328_10004881
220 Ga0265327_10001641
221 Ga0265327_10060207
222 Ga0307416_100016477
223 Ga0373956_0000139
224 Ga0373947_0166189
225 Ga0400486_17562
226 Ga0436365_1488935
227 Ga0439456_000102
228 Ga0439463_004028
229 Ga0450906_000038
230 Ga0453683_0000302
231 Ga0453683_0001863
232 Ga0453684_0005187
233 Ga0453684_0008995
234 Ga0453684_0009056
235 Ga0453684_0065908
236 Ga0453684_0102877
237 Ga0451576_0000491
238 Ga0451576_0003091
239 Ga0495638_0008779
240 Ga0495668_0033447
241 Ga0495625_0121839
242 Ga0495624_0182904
243 Ga0495671_0062689
244 Ga0496104_0180899
245 Ga0496112_0308860
246 Ga0496115_0261404
247 Ga0496121_0220465
248 Ga0496122_0034170
249 Ga0496125_0002604
250 Ga0501031_0057909
251 Ga0501036_0030661
252 Ga0501038_0041968
253 Ga0501039_0009441
254 Ga0501041_0038742
255 Ga0501042_0174613
256 Ga0501046_0113534
257 Ga0501047_0048471
258 Ga0501047_0090376
259 Ga0501047_0239530
260 Ga0501075_0117390
261 Ga0501076_0055094
262 Ga0501081_0025515
263 Ga0501035_0019134
264 Ga0501044_0055425
265 Ga0501044_0073775
266 Ga0501044_0077575
267 Ga0501045_0057346
268 nmdc:mga0n895_102046_c1
269 nmdc:mga08x19_6894_c1
270 nmdc:mga0sz30_1884_c1
271 Ga0495601_0039810
272 Ga0500593_000101
273 Ga0500645_000257
274 Ga0501084_0008955
275 Ga0501082_0082797
276 2904697319
277 2511252037
278 2512640268
279 2687236294
280 2824680025
281 2908762282
282 2924192070
283 2935784629
284 2935790610
285 2935798982
286 2938652556
287 2939595120
288 2968559276
289 8006933031
290 8006990445
291 8019547695
292 8054471450
293 8056681182
294 8056694369

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01041

DegT_DnrJ_EryC1

DegT/DnrJ/EryC1/StrS aminotransferase family

37

402

0.93

PF00155

Aminotran_1_2

Aminotransferase class I and II

52

158

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
3dr4-assembly1.cif.gz_A gdp-perosamine synthase k186a mutant from caulobacter crescentus with bound sugar ligand 0.9334 25 378
7b0m-assembly1.cif.gz_AAA-2 sugar transaminase from a metagenome collected from troll oil field production water 0.9312 22 377
3nys-assembly1.cif.gz_A x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas aeruginosa in complex with plp at 1.45 angstrom resolution 0.9188 34 375
5uid-assembly2.cif.gz_D the crystal structure of an aminotransferase tlmj from streptoalloteichus hindustanus 0.9174 24 381
7b0d-assembly1.cif.gz_B sugar transaminase from archaeoglobus veneficus 0.917 34 374
ID Description Score Start End Superfamily
1o62B01 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9284 33 270 3.40.640.10
3bn1B01 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.926 22 270 3.40.640.10
1o62B01 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9204 33 270 3.40.640.10
3bn1B01 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9145 22 270 3.40.640.10
2po3B02 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9014 262 378 3.90.1150.10
ID Description Score Start End GO Terms
AF-A0A2S6UKG6-F1-model_v4 GDP-perosamine synthase (EC 2.6.1.102) 0.9813 38 380 GO:0000271
GO:0030170
GO:0102933
AF-A0A2N1PP47-F1-model_v4 Aminotransferase DegT 0.9798 19 378 GO:0000271
GO:0008483
GO:0030170
AF-A0A3D6CFJ8-F1-model_v4 LegC family aminotransferase 0.9785 24 318 GO:0000271
GO:0008483
GO:0030170
AF-A0A849X3V3-F1-model_v4 DegT/DnrJ/EryC1/StrS family aminotransferase 0.9767 221 380 GO:0000271
GO:0008483
GO:0030170
AF-A0A1F7PN04-F1-model_v4 Aminotransferase DegT 0.9766 24 374 GO:0000271
GO:0008483
GO:0030170

Map