F201878

General Info

Members Datasets Scaffolds Average Seq Length
148 106 148 289

Family's Representative Sequence

Representative Sequence 2162886007|SwRhRL2b_contig_1238053|SwRhRL2b_0620.00001090
Length 323
Sequence LLSIYVSGFCIKGNELIQKSQNIKDSSIKTKIRRHKMKVGIDSYCYHRFFGEVYPDQKKPAKTMTMQDFLKRAKELKVDGVSLESCFFPSNADQAWFKDLKAQLDEYKFDRVYAWGHPDGLERGQNWTAYEEMVAGIPNAKAIGADVMRVVGSSLMFRHEPHGPQIKALVKMFKKAVKVAKDQGVKLAVENHIDFTSDEILQLLTEVNSEYFGLNFDTGNFLRLLDDPIKGMEKLAPYVLATHVKDLMPDKSARPTDWHFFAGVPVGKGLIDNQALAQLLQKANFQGFLAVEIDHPHADWTEREDEAVAFSIKALKKIALSLN

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
5 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
6 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
7 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
8 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
9 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
10 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
11 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
12 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
13 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
14 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
15 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
16 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
17 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
18 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
19 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
20 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
24 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
25 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
26 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
27 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
28 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
29 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
30 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
31 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
32 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
33 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
34 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
35 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
36 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
44 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
45 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
46 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
47 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
48 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
49 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
50 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
51 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
52 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
53 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
54 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
55 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
56 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
57 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
58 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
59 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
60 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
61 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
62 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
63 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
64 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
65 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
66 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
67 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
68 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
69 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
70 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
71 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
72 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
73 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
74 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
75 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
76 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
77 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
78 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
79 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
80 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
81 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
82 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
83 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
84 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
85 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
86 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
87 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
88 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
89 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
90 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
95 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
96 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
97 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
98 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
99 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
102 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
103 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
104 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
105 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
106 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.97
Metatranscriptomes 2.03
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 2.7
Rhizosphere 93.24
Stem 0
Stem Tuber 0
Unclassified 4.05

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1238053 2162886007 Bacteria 15632
2 Ga0065704_10070518 3300005289 Bacteria 21942
3 Ga0065707_10000797 3300005295 Bacteria 23511
4 Ga0070675_100162065 3300005354 Bacteria 1924
5 Ga0070659_100569130 3300005366 Bacteria 971
6 Ga0070706_100274850 3300005467 Unclassified 1572
7 Ga0070707_100571246 3300005468 Unclassified 1093
8 Ga0070697_100184601 3300005536 Bacteria 1769
9 Ga0068853_100026744 3300005539 Bacteria 4846
10 Ga0068853_100183310 3300005539 Bacteria 1899
11 Ga0068852_100238411 3300005616 Unclassified 1737
12 Ga0068860_100625714 3300005843 Bacteria 1083
13 Ga0081455_10010265 3300005937 Bacteria 9521
14 Ga0097621_100070126 3300006237 Bacteria 2894
15 Ga0075428_100056435 3300006844 Bacteria 4302
16 Ga0075431_100009989 3300006847 Bacteria 9534
17 Ga0075433_10006672 3300006852 Bacteria 9139
18 Ga0075433_10022951 3300006852 Bacteria 5245
19 Ga0075433_10170417 3300006852 Bacteria 1937
20 Ga0075434_100002207 3300006871 Bacteria 16973
21 Ga0075434_100006704 3300006871 Bacteria 10579
22 Ga0075434_100451114 3300006871 Unclassified 1307
23 Ga0068865_100106549 3300006881 Bacteria 2061
24 Ga0075436_100001207 3300006914 Bacteria 17594
25 Ga0075435_100082672 3300007076 Bacteria 2640
26 Ga0111539_10929523 3300009094 Unclassified 1011
27 Ga0114129_10048509 3300009147 Bacteria 5967
28 Ga0114129_10054229 3300009147 Bacteria 5622
29 Ga0105242_10549280 3300009176 Unclassified 1107
30 Ga0105249_10566065 3300009553 Unclassified 1188
31 Ga0105246_10028379 3300011119 Bacteria 3676
32 Ga0157370_10335360 3300013104 Bacteria 1394
33 Ga0157369_10012448 3300013105 Bacteria 9655
34 Ga0157369_10027800 3300013105 Bacteria 6266
35 Ga0157369_10618769 3300013105 Bacteria 1117
36 Ga0157374_10025648 3300013296 Bacteria 5296
37 Ga0157374_10078214 3300013296 Bacteria 3132
38 Ga0157374_10491213 3300013296 Bacteria 1231
39 Ga0157378_10147512 3300013297 Bacteria 2189
40 Ga0157372_10056968 3300013307 Unclassified 4368
41 Ga0157372_10117856 3300013307 Unclassified 3046
42 Ga0157375_10000006 3300013308 Bacteria 384086
43 Ga0157375_10003516 3300013308 Bacteria 13589
44 Ga0163163_10000038 3300014325 Bacteria 154457
45 Ga0157376_10003844 3300014969 Bacteria 10383
46 Ga0157376_10873102 3300014969 Unclassified 916
47 Ga0213874_10005626 3300021377 Unclassified 2931
48 Ga0213876_10036236 3300021384 Bacteria 2603
49 Ga0207659_10077829 3300025926 Bacteria 2442
50 Ga0207639_10064623 3300026041 Bacteria 2837
51 Ga0207702_10057709 3300026078 Unclassified 3301
52 Ga0207641_10081178 3300026088 Bacteria 2816
53 Ga0207683_10135714 3300026121 Unclassified 2215
54 Ga0207698_10539801 3300026142 Bacteria 1141
55 Ga0268265_10446510 3300028380 Bacteria 1207
56 Ga0265326_10022476 3300028558 Bacteria 1806
57 Ga0265336_10030842 3300028666 Bacteria 1669
58 Ga0265338_10002782 3300028800 Bacteria 25570
59 Ga0265338_10009604 3300028800 Bacteria 11492
60 Ga0265332_10075678 3300031238 Unclassified 1431
61 Ga0265320_10053394 3300031240 Unclassified 1954
62 Ga0265329_10009302 3300031242 Bacteria 3674
63 Ga0265329_10021311 3300031242 Bacteria 2177
64 Ga0265339_10155394 3300031249 Unclassified 1154
65 Ga0265331_10013472 3300031250 Bacteria 4395
66 Ga0265327_10016737 3300031251 Bacteria 4637
67 Ga0265316_10001395 3300031344 Bacteria 26025
68 Ga0265316_10043569 3300031344 Bacteria 3575
69 Ga0265313_10026780 3300031595 Bacteria 3030
70 Ga0316575_10007401 3300031665 Unclassified 3975
71 Ga0316575_10059803 3300031665 Unclassified 1521
72 Ga0316579_10003912 3300031691 Bacteria 5868
73 Ga0316579_10098354 3300031691 Unclassified 1400
74 Ga0265314_10032029 3300031711 Bacteria 3873
75 Ga0265342_10084550 3300031712 Bacteria 1827
76 Ga0316576_10000250 3300031727 Bacteria 23393
77 Ga0316576_10165627 3300031727 Bacteria 1668
78 Ga0316578_10020574 3300031728 Bacteria 3649
79 Ga0316578_10021190 3300031728 Bacteria 3605
80 Ga0316577_10000180 3300031733 Bacteria 20479
81 Ga0316577_10007869 3300031733 Bacteria 5690
82 Ga0316577_10044069 3300031733 Bacteria 2495
83 Ga0316583_10002740 3300032133 Bacteria 6163
84 Ga0316583_10058219 3300032133 Bacteria 1356
85 Ga0316585_10011503 3300032137 Unclassified 2611
86 Ga0316593_10044576 3300032168 Bacteria 1485
87 Ga0316586_1004254 3300033527 Bacteria 1942
88 Ga0316588_1042811 3300033528 Unclassified 1086
89 Ga0373946_0012457 3300035171 Bacteria 3184
90 Ga0316574_0000715 3300035398 Bacteria 14180
91 Ga0316574_0001330 3300035398 Bacteria 11591
92 Ga0316574_0001907 3300035398 Bacteria 10217
93 Ga0316574_0053220 3300035398 Bacteria 2526
94 Ga0316574_0180113 3300035398 Bacteria 1360
95 Ga0373927_0005213 3300035695 Bacteria 8989
96 Ga0373947_0042162 3300035725 Bacteria 2724
97 Ga0373937_0358380 3300036401 Bacteria 1382
98 Ga0316582_0003329 3300036647 Bacteria 7850
99 Ga0316582_0005029 3300036647 Bacteria 6758
100 Ga0316582_0007016 3300036647 Bacteria 5972
101 Ga0316582_0026842 3300036647 Bacteria 3471
102 Ga0316582_0186102 3300036647 Bacteria 1414
103 Ga0316584_0001424 3300036712 Bacteria 14316
104 Ga0373925_0001439 3300037068 Bacteria 20628
105 Ga0373925_0147338 3300037068 Unclassified 1846
106 Ga0395905_0017701 3300037471 Bacteria 6766
107 Ga0316581_0003468 3300037588 Bacteria 3926
108 Ga0316581_0010083 3300037588 Bacteria 2612
109 Ga0436364_1255076 3300037853 Unclassified 3926
110 Ga0436365_1553208 3300039437 Bacteria 2151
111 Ga0436365_1662563 3300039437 Bacteria 1666
112 Ga0436363_1306841 3300039450 Bacteria 13356
113 Ga0451577_0518080 3300042876 Unclassified 1083
114 Ga0453683_0014855 3300044673 Bacteria 5054
115 Ga0453683_0269170 3300044673 Bacteria 1087
116 Ga0466963_0115465 3300044694 Unclassified 1845
117 Ga0453684_0003486 3300044712 Bacteria 35332
118 Ga0453684_0172727 3300044712 Bacteria 2545
119 Ga0451576_0262578 3300045051 Bacteria 1805
120 Ga0466958_0188281 3300045836 Bacteria 1311
121 Ga0466967_0030238 3300045976 Bacteria 4543
122 Ga0496108_0521157 3300048911 Bacteria 1038
123 Ga0496112_0290466 3300048915 Unclassified 1581
124 Ga0496113_0079555 3300048916 Unclassified 2510
125 Ga0496115_0008868 3300048918 Bacteria 7455
126 Ga0501033_0125891 3300049570 Bacteria 1858
127 Ga0501034_0021543 3300049571 Bacteria 6567
128 Ga0501034_0035755 3300049571 Bacteria 5035
129 Ga0501040_0428367 3300049576 Bacteria 951
130 Ga0501047_0055672 3300049581 Bacteria 3824
131 Ga0501070_0025767 3300049586 Bacteria 4934
132 Ga0501070_0093596 3300049586 Unclassified 2486
133 Ga0501073_0017252 3300049589 Bacteria 5230
134 Ga0501073_0038744 3300049589 Bacteria 3380
135 Ga0501074_0013230 3300049590 Bacteria 6000
136 Ga0501080_0006011 3300049742 Bacteria 10882
137 Ga0501083_0127944 3300049744 Bacteria 1665
138 Ga0501035_0240667 3300049822 Bacteria 1539
139 Ga0501044_0044850 3300049823 Bacteria 4585
140 Ga0501045_0226983 3300049824 Unclassified 1390
141 nmdc:mga08y16_19831_c1 3300050511 Bacteria 7090
142 nmdc:mga08y16_78724_c1 3300050511 Bacteria 3436
143 nmdc:mga0n895_4941_c1 3300050512 Bacteria 11058
144 nmdc:mga0n895_5494_c1 3300050512 Bacteria 10603
145 nmdc:mga0rr50_69871_c1 3300050513 Bacteria 2674
146 nmdc:mga08x19_332_c1 3300050514 Bacteria 34101
147 nmdc:mga0a205_3131_c1 3300050515 Bacteria 14669
148 nmdc:mga0a205_5227_c3 3300050515 Bacteria 6543

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049824 Ga0501045_0226983 Ga0501045_0226983_54_788 244
2 3300026088 Ga0207641_10081178 Ga0207641_100811782 247
3 3300037068 Ga0373925_0147338 Ga0373925_0147338_10_768 251
4 3300035171 Ga0373946_0012457 Ga0373946_0012457_1357_2133 258
5 3300035695 Ga0373927_0005213 Ga0373927_0005213_8117_8893 258
6 3300037068 Ga0373925_0001439 Ga0373925_0001439_10152_10928 258
7 3300005354 Ga0070675_100162065 Ga0070675_1001620652 259
8 3300005616 Ga0068852_100238411 Ga0068852_1002384111 259
9 3300025926 Ga0207659_10077829 Ga0207659_100778292 259
10 3300026142 Ga0207698_10539801 Ga0207698_105398012 259
11 3300036647 Ga0316582_0186102 Ga0316582_0186102_610_1389 259
12 3300036401 Ga0373937_0358380 Ga0373937_0358380_325_1128 267
13 3300006844 Ga0075428_100056435 Ga0075428_1000564351 284
14 3300006847 Ga0075431_100009989 Ga0075431_10000998911 284
15 3300006852 Ga0075433_10006672 Ga0075433_100066724 284
16 3300006852 Ga0075433_10170417 Ga0075433_101704172 284
17 3300006871 Ga0075434_100006704 Ga0075434_1000067043 284
18 3300006871 Ga0075434_100451114 Ga0075434_1004511142 284
19 3300009147 Ga0114129_10048509 Ga0114129_100485094 284
20 3300009553 Ga0105249_10566065 Ga0105249_105660652 284
21 3300028380 Ga0268265_10446510 Ga0268265_104465102 284
22 3300036647 Ga0316582_0026842 Ga0316582_0026842_2099_2953 284
23 3300050512 nmdc:mga0n895_5494_c1 nmdc:mga0n895_5494_c1_7687_8544 284
24 3300050515 nmdc:mga0a205_3131_c1 nmdc:mga0a205_3131_c1_8113_8970 284
25 3300006852 Ga0075433_10022951 Ga0075433_100229513 285
26 3300006871 Ga0075434_100002207 Ga0075434_1000022078 285
27 3300006914 Ga0075436_100001207 Ga0075436_1000012073 285
28 3300007076 Ga0075435_100082672 Ga0075435_1000826722 285
29 3300044673 Ga0453683_0014855 Ga0453683_0014855_577_1437 285
30 3300044673 Ga0453683_0269170 Ga0453683_0269170_207_1067 285
31 3300050512 nmdc:mga0n895_4941_c1 nmdc:mga0n895_4941_c1_5527_6408 285
32 3300050513 nmdc:mga0rr50_69871_c1 nmdc:mga0rr50_69871_c1_911_1792 285
33 3300050514 nmdc:mga08x19_332_c1 nmdc:mga08x19_332_c1_27994_28872 285
34 3300050515 nmdc:mga0a205_5227_c3 nmdc:mga0a205_5227_c3_2358_3239 285
35 3300005366 Ga0070659_100569130 Ga0070659_1005691301 286
36 3300005467 Ga0070706_100274850 Ga0070706_1002748502 286
37 3300005468 Ga0070707_100571246 Ga0070707_1005712461 286
38 3300005536 Ga0070697_100184601 Ga0070697_1001846011 286
39 3300005539 Ga0068853_100026744 Ga0068853_1000267442 286
40 3300005539 Ga0068853_100183310 Ga0068853_1001833102 286
41 3300005843 Ga0068860_100625714 Ga0068860_1006257141 286
42 3300005937 Ga0081455_10010265 Ga0081455_100102656 286
43 3300006237 Ga0097621_100070126 Ga0097621_1000701263 286
44 3300006881 Ga0068865_100106549 Ga0068865_1001065492 286
45 3300009094 Ga0111539_10929523 Ga0111539_109295231 286
46 3300009147 Ga0114129_10054229 Ga0114129_100542292 286
47 3300009176 Ga0105242_10549280 Ga0105242_105492802 286
48 3300013104 Ga0157370_10335360 Ga0157370_103353602 286
49 3300013105 Ga0157369_10012448 Ga0157369_100124486 286
50 3300013105 Ga0157369_10027800 Ga0157369_100278006 286
51 3300013105 Ga0157369_10618769 Ga0157369_106187691 286
52 3300013296 Ga0157374_10025648 Ga0157374_100256482 286
53 3300013296 Ga0157374_10078214 Ga0157374_100782142 286
54 3300013296 Ga0157374_10491213 Ga0157374_104912131 286
55 3300013297 Ga0157378_10147512 Ga0157378_101475122 286
56 3300013307 Ga0157372_10056968 Ga0157372_100569684 286
57 3300013307 Ga0157372_10117856 Ga0157372_101178562 286
58 3300013308 Ga0157375_10000006 Ga0157375_10000006309 286
59 3300013308 Ga0157375_10003516 Ga0157375_100035161 286
60 3300014325 Ga0163163_10000038 Ga0163163_1000003842 286
61 3300014969 Ga0157376_10003844 Ga0157376_1000384410 286
62 3300014969 Ga0157376_10873102 Ga0157376_108731021 286
63 3300021377 Ga0213874_10005626 Ga0213874_100056264 286
64 3300021384 Ga0213876_10036236 Ga0213876_100362362 286
65 3300026041 Ga0207639_10064623 Ga0207639_100646232 286
66 3300026078 Ga0207702_10057709 Ga0207702_100577092 286
67 3300026121 Ga0207683_10135714 Ga0207683_101357142 286
68 3300028558 Ga0265326_10022476 Ga0265326_100224762 286
69 3300028666 Ga0265336_10030842 Ga0265336_100308422 286
70 3300028800 Ga0265338_10002782 Ga0265338_1000278213 286
71 3300028800 Ga0265338_10009604 Ga0265338_100096043 286
72 3300031238 Ga0265332_10075678 Ga0265332_100756781 286
73 3300031240 Ga0265320_10053394 Ga0265320_100533942 286
74 3300031242 Ga0265329_10009302 Ga0265329_100093023 286
75 3300031242 Ga0265329_10021311 Ga0265329_100213112 286
76 3300031249 Ga0265339_10155394 Ga0265339_101553941 286
77 3300031250 Ga0265331_10013472 Ga0265331_100134724 286
78 3300031251 Ga0265327_10016737 Ga0265327_100167373 286
79 3300031344 Ga0265316_10001395 Ga0265316_1000139515 286
80 3300031344 Ga0265316_10043569 Ga0265316_100435693 286
81 3300031595 Ga0265313_10026780 Ga0265313_100267802 286
82 3300031691 Ga0316579_10098354 Ga0316579_100983542 286
83 3300031711 Ga0265314_10032029 Ga0265314_100320293 286
84 3300031712 Ga0265342_10084550 Ga0265342_100845502 286
85 3300031727 Ga0316576_10000250 Ga0316576_1000025014 286
86 3300031727 Ga0316576_10165627 Ga0316576_101656272 286
87 3300031733 Ga0316577_10044069 Ga0316577_100440692 286
88 3300032133 Ga0316583_10002740 Ga0316583_100027406 286
89 3300032133 Ga0316583_10058219 Ga0316583_100582192 286
90 3300033528 Ga0316588_1042811 Ga0316588_10428112 286
91 3300035725 Ga0373947_0042162 Ga0373947_0042162_1257_2120 286
92 3300037853 Ga0436364_1255076 Ga0436364_1255076_1751_2617 286
93 3300039437 Ga0436365_1553208 Ga0436365_1553208_361_1254 286
94 3300039437 Ga0436365_1662563 Ga0436365_1662563_453_1319 286
95 3300039450 Ga0436363_1306841 Ga0436363_1306841_1877_2743 286
96 3300042876 Ga0451577_0518080 Ga0451577_0518080_184_1044 286
97 3300044694 Ga0466963_0115465 Ga0466963_0115465_220_1098 286
98 3300045836 Ga0466958_0188281 Ga0466958_0188281_112_990 286
99 3300045976 Ga0466967_0030238 Ga0466967_0030238_2881_3762 286
100 3300048911 Ga0496108_0521157 Ga0496108_0521157_23_904 286
101 3300048915 Ga0496112_0290466 Ga0496112_0290466_575_1435 286
102 3300048916 Ga0496113_0079555 Ga0496113_0079555_733_1593 286
103 3300048918 Ga0496115_0008868 Ga0496115_0008868_5256_6140 286
104 3300049570 Ga0501033_0125891 Ga0501033_0125891_119_1000 286
105 3300049571 Ga0501034_0021543 Ga0501034_0021543_3165_4046 286
106 3300049571 Ga0501034_0035755 Ga0501034_0035755_1250_2131 286
107 3300049576 Ga0501040_0428367 Ga0501040_0428367_30_890 286
108 3300049581 Ga0501047_0055672 Ga0501047_0055672_766_1647 286
109 3300049586 Ga0501070_0025767 Ga0501070_0025767_1762_2643 286
110 3300049586 Ga0501070_0093596 Ga0501070_0093596_113_994 286
111 3300049589 Ga0501073_0017252 Ga0501073_0017252_1379_2260 286
112 3300049589 Ga0501073_0038744 Ga0501073_0038744_374_1255 286
113 3300049590 Ga0501074_0013230 Ga0501074_0013230_2473_3354 286
114 3300049742 Ga0501080_0006011 Ga0501080_0006011_9645_10526 286
115 3300049744 Ga0501083_0127944 Ga0501083_0127944_640_1521 286
116 3300049822 Ga0501035_0240667 Ga0501035_0240667_332_1213 286
117 3300049823 Ga0501044_0044850 Ga0501044_0044850_1673_2554 286
118 3300005289 Ga0065704_10070518 Ga0065704_100705186 287
119 3300005295 Ga0065707_10000797 Ga0065707_100007979 287
120 3300011119 Ga0105246_10028379 Ga0105246_100283791 287
121 3300031728 Ga0316578_10021190 Ga0316578_100211903 287
122 3300031733 Ga0316577_10007869 Ga0316577_100078693 287
123 3300033527 Ga0316586_1004254 Ga0316586_10042542 287
124 3300037471 Ga0395905_0017701 Ga0395905_0017701_5194_6081 287
125 3300035398 Ga0316574_0053220 Ga0316574_0053220_520_1392 288
126 3300031665 Ga0316575_10007401 Ga0316575_100074016 289
127 3300031665 Ga0316575_10059803 Ga0316575_100598033 289
128 3300031691 Ga0316579_10003912 Ga0316579_100039123 289
129 3300031728 Ga0316578_10020574 Ga0316578_100205742 289
130 3300031733 Ga0316577_10000180 Ga0316577_100001806 289
131 3300032137 Ga0316585_10011503 Ga0316585_100115033 289
132 3300032168 Ga0316593_10044576 Ga0316593_100445762 289
133 3300035398 Ga0316574_0000715 Ga0316574_0000715_9481_10350 289
134 3300035398 Ga0316574_0001330 Ga0316574_0001330_4011_4880 289
135 3300036647 Ga0316582_0005029 Ga0316582_0005029_1596_2465 289
136 3300036647 Ga0316582_0007016 Ga0316582_0007016_3395_4264 289
137 3300036712 Ga0316584_0001424 Ga0316584_0001424_4827_5696 289
138 3300037588 Ga0316581_0003468 Ga0316581_0003468_384_1253 289
139 3300044712 Ga0453684_0003486 Ga0453684_0003486_6150_7019 289
140 3300044712 Ga0453684_0172727 Ga0453684_0172727_439_1308 289
141 3300035398 Ga0316574_0180113 Ga0316574_0180113_247_1125 290
142 3300035398 Ga0316574_0001907 Ga0316574_0001907_7184_8059 291
143 3300036647 Ga0316582_0003329 Ga0316582_0003329_1343_2218 291
144 3300037588 Ga0316581_0010083 Ga0316581_0010083_551_1426 291
145 3300045051 Ga0451576_0262578 Ga0451576_0262578_82_1005 296
146 3300050511 nmdc:mga08y16_19831_c1 nmdc:mga08y16_19831_c1_97_1044 299
147 3300050511 nmdc:mga08y16_78724_c1 nmdc:mga08y16_78724_c1_1341_2240 299
148 2162886007 SwRhRL2b_contig_1238053 SwRhRL2b_0620.00001090 323

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01261

AP_endonuc_2

Xylose isomerase-like TIM barrel

70

318

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
3lmz-assembly1.cif.gz_A-2 crystal structure of putative sugar isomerase. (yp_001305105.1) from parabacteroides distasonis atcc 8503 at 1.44 a resolution 0.8312 36 319
4ovx-assembly1.cif.gz_A crystal structure of xylose isomerase domain protein from planctomyces limnophilus dsm 3776 0.8198 37 323
4ovx-assembly1.cif.gz_A crystal structure of xylose isomerase domain protein from planctomyces limnophilus dsm 3776 0.8112 37 323
3wqo-assembly1.cif.gz_B crystal structure of d-tagatose 3-epimerase-like protein 0.8032 37 323
3tva-assembly2.cif.gz_B crystal structure of xylose isomerase domain protein from planctomyces limnophilus 0.7994 36 322
ID Description Score Start End Superfamily
af_P32134_16_258_3.20.20.150 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.8167 37 297 3.20.20.150
4ovxA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.8155 37 321 3.20.20.150
3lmzA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.8146 36 319 3.20.20.150
af_P32134_16_258_3.20.20.150 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.8078 37 297 3.20.20.150
4ovxA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.8039 37 321 3.20.20.150
ID Description Score Start End GO Terms
AF-A0A6J4XGF2-F1-model_v4 Xylose isomerase-like TIM barrel domain-containing protein 0.9974 37 323
AF-A0A6J4XGF2-F1-model_v4 Xylose isomerase-like TIM barrel domain-containing protein 0.9939 37 323
AF-A0A0S8BNJ1-F1-model_v4 Xylose isomerase-like TIM barrel domain-containing protein 0.9907 213 323
AF-A0A7X9FZV3-F1-model_v4 Sugar phosphate isomerase/epimerase 0.988 100 323 GO:0016829
GO:0016853
AF-A0A645HZS8-F1-model_v4 Inosose dehydratase (EC 4.2.1.44) 0.9864 133 323 GO:0050114

Feature Viewer

pLDDT pTM Quality
89.72 0.85 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map