F203032

General Info

Members Datasets Scaffolds Average Seq Length
148 109 147 363

Family's Representative Sequence

Representative Sequence 3300009147|Ga0114129_10165461|Ga0114129_101654613
Length 400
Sequence MGSHFIQMQLPSRTRIIIANCKKILSSHSRIINAMPLYMDVHIVPGVKAKDVAEAHRKDLLHQHEYGCNCMTYWIDEERETIFCLIDAANKDAVREMHNKAHGLVPNKIIEVSSSIVESFLGRIYDPEDVKIGEDGLKIFADSSFRTLIVTRIADPVLLQHQLGTEKANELINRYNEIIRKNILLHNGSEVEHGGDGFIISFASASKAIACALAIQKDMPKFDSTILDFRIAINGGEPIEKSNKLFGDVIQFANHLAAISNNSQIVIASSIKELVSKDILQNKFNAFLSLSPQDESVLKQLYQKLEEKWQDPDFDIPEYCKEMAMSQSQLYRKTTALTGLSCNTFLKDFRLQKAKDQMKKQRYTISQITFDSGFTSPSYFTKCFKKKYGLLPMEYIDLLH

Samples

Sample ID Description Type Environment
1 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
2 2738541278 Niastella sp. CF465 Isolate Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
13 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
19 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
20 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
24 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
25 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
26 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
29 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
30 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
31 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
32 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
33 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
34 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
39 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
41 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
42 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
43 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
48 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
49 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
52 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
53 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
54 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
55 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
56 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
57 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
81 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
82 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
83 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
84 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
85 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
86 3300041503 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_8 MetaG Metagenome Unclassified
87 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
88 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
89 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
90 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
91 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
92 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
93 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
95 3300049674 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_A_3_drought Metagenome Rhizosphere
96 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
97 3300049680 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I13_B_3_drought Metagenome Rhizosphere
98 3300049682 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_B_3_drought Metagenome Rhizosphere
99 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
100 3300049765 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought Metagenome Rhizosphere
101 3300049767 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A15_B_4_drought Metagenome Rhizosphere
102 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
103 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
104 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
105 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
106 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
107 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
108 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
109 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.32
Metatranscriptomes 0
Isolates 0.68

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.41
Nodule 0
Rhizoplane 0
Rhizosphere 87.84
Stem 0
Stem Tuber 0
Unclassified 6.76

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 MBSR1b_contig_4545900 2162886012 Bacteria 1275
2 rootH1_10000182 3300003323 Bacteria 80743
3 rootH1_10133550 3300003323 Bacteria 3781
4 rootH1_10158444 3300003323 Bacteria 2995
5 Ga0065704_10099421 3300005289 Bacteria 2313
6 Ga0065704_10220273 3300005289 Bacteria 1018
7 Ga0070683_100164157 3300005329 Bacteria 2107
8 Ga0070670_100192214 3300005331 Bacteria 1773
9 Ga0068869_100288302 3300005334 Bacteria 1322
10 Ga0068868_100035326 3300005338 Bacteria 3863
11 Ga0070660_100161001 3300005339 Bacteria 1808
12 Ga0070661_100103439 3300005344 Unclassified 2121
13 Ga0070675_100029498 3300005354 Bacteria 4425
14 Ga0070675_100157055 3300005354 Bacteria 1953
15 Ga0070675_100160569 3300005354 Bacteria 1932
16 Ga0070675_100434807 3300005354 Unclassified 1175
17 Ga0070674_100146257 3300005356 Bacteria 1779
18 Ga0070673_100237423 3300005364 Bacteria 1584
19 Ga0070667_100173028 3300005367 Bacteria 1907
20 Ga0070667_100205527 3300005367 Bacteria 1748
21 Ga0070685_10030269 3300005466 Bacteria 3014
22 Ga0070698_100002200 3300005471 Bacteria 21650
23 Ga0070698_100005961 3300005471 Bacteria 13285
24 Ga0070679_100076139 3300005530 Bacteria 3345
25 Ga0070684_100030705 3300005535 Bacteria 4569
26 Ga0070664_100003287 3300005564 Bacteria 13053
27 Ga0068857_100114991 3300005577 Bacteria 2420
28 Ga0068856_100005345 3300005614 Bacteria 12678
29 Ga0068852_100026428 3300005616 Bacteria 4718
30 Ga0068852_100097925 3300005616 Unclassified 2640
31 Ga0068852_100479902 3300005616 Bacteria 1235
32 Ga0068859_100053226 3300005617 Bacteria 4071
33 Ga0068864_100008995 3300005618 Bacteria 8237
34 Ga0068861_100038504 3300005719 Bacteria 3561
35 Ga0068870_10056399 3300005840 Bacteria 2097
36 Ga0068870_10181441 3300005840 Bacteria 1264
37 Ga0068860_100109659 3300005843 Unclassified 2638
38 Ga0081539_10008031 3300005985 Bacteria 9351
39 Ga0097621_100012018 3300006237 Bacteria 6407
40 Ga0068871_100153233 3300006358 Bacteria 1967
41 Ga0068871_100221285 3300006358 Bacteria 1640
42 Ga0075428_100147352 3300006844 Unclassified 2558
43 Ga0075430_100076773 3300006846 Bacteria 2800
44 Ga0075431_100046757 3300006847 Unclassified 4463
45 Ga0075431_100086401 3300006847 Unclassified 3237
46 Ga0075429_100036991 3300006880 Bacteria 4248
47 Ga0075429_100094246 3300006880 Unclassified 2611
48 Ga0097620_100053225 3300006931 Bacteria 4071
49 Ga0105240_10030162 3300009093 Bacteria 7053
50 Ga0111539_10121504 3300009094 Unclassified 3060
51 Ga0105247_10002653 3300009101 Bacteria 12052
52 Ga0114129_10015370 3300009147 Bacteria 10891
53 Ga0114129_10048689 3300009147 Bacteria 5956
54 Ga0114129_10164246 3300009147 Bacteria 3031
55 Ga0114129_10165461 3300009147 Unclassified 3019
56 Ga0105241_10021094 3300009174 Bacteria 4816
57 Ga0105242_10002416 3300009176 Bacteria 14683
58 Ga0105242_10356147 3300009176 Unclassified 1353
59 Ga0105237_10100266 3300009545 Unclassified 2887
60 Ga0105237_10105387 3300009545 Bacteria 2811
61 Ga0105249_10000721 3300009553 Bacteria 30101
62 Ga0105249_10002512 3300009553 Bacteria 15862
63 Ga0105249_10012142 3300009553 Bacteria 7583
64 Ga0105249_10136204 3300009553 Bacteria 2350
65 Ga0105239_10044768 3300010375 Bacteria 4850
66 Ga0157373_10008518 3300013100 Bacteria 7618
67 Ga0157374_10059647 3300013296 Bacteria 3568
68 Ga0157374_10075922 3300013296 Bacteria 3176
69 Ga0157374_10098491 3300013296 Bacteria 2800
70 Ga0163162_10220827 3300013306 Bacteria 2025
71 Ga0163162_10399872 3300013306 Unclassified 1506
72 Ga0157372_10036746 3300013307 Bacteria 5401
73 Ga0157372_10267481 3300013307 Bacteria 1986
74 Ga0157372_10360618 3300013307 Unclassified 1694
75 Ga0157375_10200108 3300013308 Bacteria 2153
76 Ga0163163_10128229 3300014325 Bacteria 2576
77 Ga0157380_10000032 3300014326 Bacteria 87669
78 Ga0157380_10009921 3300014326 Bacteria 6835
79 Ga0157377_10047148 3300014745 Bacteria 2413
80 Ga0157379_10304050 3300014968 Bacteria 1454
81 Ga0157376_10141804 3300014969 Bacteria 2157
82 Ga0163161_10007880 3300017792 Bacteria 7368
83 Ga0213876_10009020 3300021384 Bacteria 5373
84 Ga0209455_1002710 3300025272 Bacteria 6653
85 Ga0207710_10011494 3300025900 Bacteria 3726
86 Ga0207695_10038151 3300025913 Bacteria 5176
87 Ga0207671_10086807 3300025914 Unclassified 2352
88 Ga0207660_10058031 3300025917 Bacteria 2774
89 Ga0207657_10111423 3300025919 Bacteria 2259
90 Ga0207649_10033388 3300025920 Unclassified 3074
91 Ga0207659_10030067 3300025926 Bacteria 3708
92 Ga0207686_10000459 3300025934 Bacteria 27073
93 Ga0207670_10166057 3300025936 Bacteria 1652
94 Ga0207669_10108881 3300025937 Bacteria 1851
95 Ga0207661_10216297 3300025944 Bacteria 1691
96 Ga0207679_10007819 3300025945 Bacteria 6793
97 Ga0207651_10106255 3300025960 Bacteria 2096
98 Ga0207712_10014610 3300025961 Bacteria 5056
99 Ga0207712_10016179 3300025961 Bacteria 4823
100 Ga0207658_10120350 3300025986 Bacteria 2092
101 Ga0207708_10130728 3300026075 Bacteria 1963
102 Ga0207702_10102978 3300026078 Bacteria 2524
103 Ga0207641_10002576 3300026088 Bacteria 16662
104 Ga0207676_10045486 3300026095 Bacteria 3392
105 Ga0207676_10052354 3300026095 Bacteria 3191
106 Ga0207674_10126289 3300026116 Bacteria 2524
107 Ga0207675_100045969 3300026118 Bacteria 4078
108 Ga0207683_10106201 3300026121 Bacteria 2511
109 Ga0307515_10000001 3300028794 Bacteria 4259510
110 Ga0307513_10054381 3300031456 Bacteria 4293
111 Ga0307509_10040059 3300031507 Bacteria 5098
112 Ga0307409_100165964 3300031995 Bacteria 1938
113 Ga0395905_0142563 3300037471 Bacteria 2254
114 Ga0436365_0962336 3300039437 Bacteria 5603
115 Ga0451847_0147181 3300041503 Bacteria 1396
116 Ga0439431_0003373 3300041997 Bacteria 3514
117 Ga0466972_0000013 3300044658 Bacteria 229345
118 Ga0466966_0134428 3300044684 Bacteria 1513
119 Ga0453684_0027126 3300044712 Bacteria 8231
120 Ga0495672_0019516 3300047320 Bacteria 4469
121 Ga0495686_0088914 3300047472 Bacteria 1877
122 Ga0495686_0090185 3300047472 Bacteria 1862
123 Ga0501047_0030842 3300049581 Bacteria 5168
124 Ga0501202_003345 3300049652 Bacteria 2741
125 Ga0501242_000052 3300049674 Bacteria 7216
126 Ga0501243_000825 3300049675 Bacteria 4312
127 Ga0501250_000290 3300049680 Bacteria 3143
128 Ga0501252_000667 3300049682 Bacteria 2772
129 Ga0501257_002662 3300049686 Bacteria 3771
130 Ga0501257_005786 3300049686 Unclassified 2734
131 Ga0501257_005876 3300049686 Bacteria 2715
132 Ga0501268_001682 3300049765 Bacteria 2803
133 Ga0501270_001533 3300049767 Bacteria 2227
134 nmdc:mga05p37_1576_c1 3300050507 Bacteria 19968
135 nmdc:mga05p37_418929_c1 3300050507 Unclassified 1559
136 nmdc:mga05p37_47393_c1 3300050507 Bacteria 5285
137 nmdc:mga09592_203979_c1 3300050508 Unclassified 1713
138 nmdc:mga09592_29481_c1 3300050508 Unclassified 4564
139 nmdc:mga06r32_21277_c1 3300050510 Bacteria 5986
140 nmdc:mga06r32_344552_c1 3300050510 Unclassified 1475
141 Ga0500578_0000628 3300053086 Bacteria 42830
142 Ga0500578_0021263 3300053086 Bacteria 4170
143 Ga0500583_0000027 3300053092 Bacteria 109138
144 Ga0500583_0001109 3300053092 Bacteria 7670
145 Ga0500652_038479 3300053131 Bacteria 1913
146 Ga0500616_0116811 3300053153 Unclassified 1280
147 Ga0500611_000037 3300053727 Bacteria 72513

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300047472 Ga0495686_0088914 Ga0495686_0088914_880_1866 328
2 3300005289 Ga0065704_10220273 Ga0065704_102202731 329
3 3300013307 Ga0157372_10036746 Ga0157372_100367463 329
4 3300009553 Ga0105249_10136204 Ga0105249_101362041 330
5 3300013307 Ga0157372_10267481 Ga0157372_102674813 330
6 3300014745 Ga0157377_10047148 Ga0157377_100471482 330
7 3300049680 Ga0501250_000290 Ga0501250_000290_2139_3131 330
8 3300049767 Ga0501270_001533 Ga0501270_001533_23_1015 330
9 3300013296 Ga0157374_10059647 Ga0157374_100596474 334
10 3300009101 Ga0105247_10002653 Ga0105247_100026533 350
11 3300005577 Ga0068857_100114991 Ga0068857_1001149913 354
12 3300025900 Ga0207710_10011494 Ga0207710_100114942 354
13 3300026116 Ga0207674_10126289 Ga0207674_101262892 354
14 3300005354 Ga0070675_100029498 Ga0070675_1000294985 359
15 3300005616 Ga0068852_100479902 Ga0068852_1004799021 359
16 3300006847 Ga0075431_100046757 Ga0075431_1000467574 359
17 3300009147 Ga0114129_10015370 Ga0114129_100153707 359
18 3300013296 Ga0157374_10098491 Ga0157374_100984913 359
19 3300039437 Ga0436365_0962336 Ga0436365_0962336_3556_4635 359
20 3300050507 nmdc:mga05p37_47393_c1 nmdc:mga05p37_47393_c1_3549_4631 359
21 3300050508 nmdc:mga09592_29481_c1 nmdc:mga09592_29481_c1_177_1259 359
22 3300050510 nmdc:mga06r32_21277_c1 nmdc:mga06r32_21277_c1_2490_3572 359
23 3300005367 Ga0070667_100173028 Ga0070667_1001730282 360
24 3300009176 Ga0105242_10356147 Ga0105242_103561471 360
25 3300047472 Ga0495686_0090185 Ga0495686_0090185_109_1191 360
26 3300049686 Ga0501257_005876 Ga0501257_005876_713_1795 360
27 3300053086 Ga0500578_0000628 Ga0500578_0000628_19294_20376 360
28 iso_pu_bacteria 2738541278 2738726236 360
29 3300009093 Ga0105240_10030162 Ga0105240_100301626 362
30 3300009147 Ga0114129_10048689 Ga0114129_100486894 362
31 3300009174 Ga0105241_10021094 Ga0105241_100210943 362
32 3300009545 Ga0105237_10100266 Ga0105237_101002663 362
33 3300009545 Ga0105237_10105387 Ga0105237_101053875 362
34 3300009553 Ga0105249_10000721 Ga0105249_1000072117 362
35 3300009553 Ga0105249_10002512 Ga0105249_100025129 362
36 3300010375 Ga0105239_10044768 Ga0105239_100447682 362
37 3300013100 Ga0157373_10008518 Ga0157373_100085184 362
38 3300013296 Ga0157374_10075922 Ga0157374_100759223 362
39 3300013306 Ga0163162_10220827 Ga0163162_102208271 362
40 3300013306 Ga0163162_10399872 Ga0163162_103998721 362
41 3300013307 Ga0157372_10360618 Ga0157372_103606182 362
42 3300014325 Ga0163163_10128229 Ga0163163_101282293 362
43 3300014326 Ga0157380_10000032 Ga0157380_1000003215 362
44 3300014326 Ga0157380_10009921 Ga0157380_100099219 362
45 3300014968 Ga0157379_10304050 Ga0157379_103040501 362
46 3300025961 Ga0207712_10014610 Ga0207712_100146104 362
47 3300037471 Ga0395905_0142563 Ga0395905_0142563_41_1129 362
48 3300041997 Ga0439431_0003373 Ga0439431_0003373_2377_3465 362
49 3300044684 Ga0466966_0134428 Ga0466966_0134428_339_1427 362
50 3300044712 Ga0453684_0027126 Ga0453684_0027126_6901_7989 362
51 3300047320 Ga0495672_0019516 Ga0495672_0019516_2415_3506 362
52 3300049652 Ga0501202_003345 Ga0501202_003345_325_1413 362
53 3300049674 Ga0501242_000052 Ga0501242_000052_5318_6406 362
54 3300049675 Ga0501243_000825 Ga0501243_000825_2451_3539 362
55 3300049682 Ga0501252_000667 Ga0501252_000667_343_1431 362
56 3300049686 Ga0501257_002662 Ga0501257_002662_1008_2096 362
57 3300049686 Ga0501257_005786 Ga0501257_005786_742_1830 362
58 3300049765 Ga0501268_001682 Ga0501268_001682_1450_2538 362
59 3300050507 nmdc:mga05p37_418929_c1 nmdc:mga05p37_418929_c1_71_1159 362
60 3300050510 nmdc:mga06r32_344552_c1 nmdc:mga06r32_344552_c1_277_1365 362
61 3300053727 Ga0500611_000037 Ga0500611_000037_32696_33784 362
62 3300003323 rootH1_10158444 rootH1_101584442 363
63 3300006880 Ga0075429_100036991 Ga0075429_1000369913 363
64 3300009094 Ga0111539_10121504 Ga0111539_101215044 363
65 3300021384 Ga0213876_10009020 Ga0213876_100090202 363
66 3300005471 Ga0070698_100005961 Ga0070698_10000596110 364
67 3300006358 Ga0068871_100221285 Ga0068871_1002212851 364
68 3300005289 Ga0065704_10099421 Ga0065704_100994212 365
69 3300005354 Ga0070675_100160569 Ga0070675_1001605692 365
70 3300005719 Ga0068861_100038504 Ga0068861_1000385042 365
71 3300005840 Ga0068870_10181441 Ga0068870_101814411 365
72 3300005985 Ga0081539_10008031 Ga0081539_100080313 365
73 3300006358 Ga0068871_100153233 Ga0068871_1001532332 365
74 3300009147 Ga0114129_10164246 Ga0114129_101642462 365
75 3300013308 Ga0157375_10200108 Ga0157375_102001083 365
76 3300026118 Ga0207675_100045969 Ga0207675_1000459694 365
77 3300026121 Ga0207683_10106201 Ga0207683_101062012 365
78 3300050507 nmdc:mga05p37_1576_c1 nmdc:mga05p37_1576_c1_17845_18942 365
79 2162886012 MBSR1b_contig_4545900 MBSR1b_0309.00002670 366
80 3300003323 rootH1_10000182 rootH1_1000018236 366
81 3300003323 rootH1_10133550 rootH1_101335504 366
82 3300005329 Ga0070683_100164157 Ga0070683_1001641573 366
83 3300005331 Ga0070670_100192214 Ga0070670_1001922141 366
84 3300005334 Ga0068869_100288302 Ga0068869_1002883021 366
85 3300005338 Ga0068868_100035326 Ga0068868_1000353262 366
86 3300005339 Ga0070660_100161001 Ga0070660_1001610012 366
87 3300005344 Ga0070661_100103439 Ga0070661_1001034391 366
88 3300005354 Ga0070675_100157055 Ga0070675_1001570551 366
89 3300005354 Ga0070675_100434807 Ga0070675_1004348071 366
90 3300005356 Ga0070674_100146257 Ga0070674_1001462572 366
91 3300005364 Ga0070673_100237423 Ga0070673_1002374232 366
92 3300005367 Ga0070667_100205527 Ga0070667_1002055272 366
93 3300005466 Ga0070685_10030269 Ga0070685_100302693 366
94 3300005471 Ga0070698_100002200 Ga0070698_1000022003 366
95 3300005530 Ga0070679_100076139 Ga0070679_1000761395 366
96 3300005535 Ga0070684_100030705 Ga0070684_1000307055 366
97 3300005564 Ga0070664_100003287 Ga0070664_10000328714 366
98 3300005614 Ga0068856_100005345 Ga0068856_10000534510 366
99 3300005616 Ga0068852_100026428 Ga0068852_1000264285 366
100 3300005616 Ga0068852_100097925 Ga0068852_1000979253 366
101 3300005617 Ga0068859_100053226 Ga0068859_1000532263 366
102 3300005618 Ga0068864_100008995 Ga0068864_1000089955 366
103 3300005840 Ga0068870_10056399 Ga0068870_100563991 366
104 3300005843 Ga0068860_100109659 Ga0068860_1001096593 366
105 3300006237 Ga0097621_100012018 Ga0097621_1000120183 366
106 3300006844 Ga0075428_100147352 Ga0075428_1001473522 366
107 3300006846 Ga0075430_100076773 Ga0075430_1000767732 366
108 3300006847 Ga0075431_100086401 Ga0075431_1000864014 366
109 3300006880 Ga0075429_100094246 Ga0075429_1000942463 366
110 3300006931 Ga0097620_100053225 Ga0097620_1000532254 366
111 3300009147 Ga0114129_10165461 Ga0114129_101654613 366
112 3300009176 Ga0105242_10002416 Ga0105242_1000241612 366
113 3300009553 Ga0105249_10012142 Ga0105249_100121423 366
114 3300014969 Ga0157376_10141804 Ga0157376_101418042 366
115 3300017792 Ga0163161_10007880 Ga0163161_100078808 366
116 3300025272 Ga0209455_1002710 Ga0209455_10027105 366
117 3300025913 Ga0207695_10038151 Ga0207695_100381512 366
118 3300025914 Ga0207671_10086807 Ga0207671_100868072 366
119 3300025917 Ga0207660_10058031 Ga0207660_100580313 366
120 3300025919 Ga0207657_10111423 Ga0207657_101114233 366
121 3300025920 Ga0207649_10033388 Ga0207649_100333884 366
122 3300025926 Ga0207659_10030067 Ga0207659_100300672 366
123 3300025934 Ga0207686_10000459 Ga0207686_1000045910 366
124 3300025936 Ga0207670_10166057 Ga0207670_101660572 366
125 3300025937 Ga0207669_10108881 Ga0207669_101088811 366
126 3300025944 Ga0207661_10216297 Ga0207661_102162972 366
127 3300025945 Ga0207679_10007819 Ga0207679_100078196 366
128 3300025960 Ga0207651_10106255 Ga0207651_101062553 366
129 3300025961 Ga0207712_10016179 Ga0207712_100161792 366
130 3300025986 Ga0207658_10120350 Ga0207658_101203503 366
131 3300026075 Ga0207708_10130728 Ga0207708_101307283 366
132 3300026078 Ga0207702_10102978 Ga0207702_101029782 366
133 3300026088 Ga0207641_10002576 Ga0207641_100025764 366
134 3300026095 Ga0207676_10045486 Ga0207676_100454863 366
135 3300026095 Ga0207676_10052354 Ga0207676_100523543 366
136 3300028794 Ga0307515_10000001 Ga0307515_10000001974 366
137 3300031456 Ga0307513_10054381 Ga0307513_100543812 366
138 3300031507 Ga0307509_10040059 Ga0307509_100400592 366
139 3300031995 Ga0307409_100165964 Ga0307409_1001659641 366
140 3300041503 Ga0451847_0147181 Ga0451847_0147181_34_1161 366
141 3300044658 Ga0466972_0000013 Ga0466972_0000013_214040_215140 366
142 3300049581 Ga0501047_0030842 Ga0501047_0030842_739_1839 366
143 3300050508 nmdc:mga09592_203979_c1 nmdc:mga09592_203979_c1_404_1606 366
144 3300053086 Ga0500578_0021263 Ga0500578_0021263_663_1763 366
145 3300053092 Ga0500583_0000027 Ga0500583_0000027_84444_85544 366
146 3300053092 Ga0500583_0001109 Ga0500583_0001109_506_1606 366
147 3300053131 Ga0500652_038479 Ga0500652_038479_306_1406 366
148 3300053153 Ga0500616_0116811 Ga0500616_0116811_34_1158 366

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14026

SCO4226-like

Nickel responsive protein SCO4226-like

38

112

0.99

PF12833

HTH_18

Helix-turn-helix domain

319

397

0.98

PF00165

HTH_AraC

Bacterial regulatory helix-turn-helix proteins, AraC family

358

397

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
4oi3-assembly1.cif.gz_B crystal structure analysis of sco4226 from streptomyces coelicolor a3(2) 0.9449 3 78
3lsg-assembly1.cif.gz_A the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.9411 262 362
3w6v-assembly1.cif.gz_A crystal structure of the dna-binding domain of adpa, the global transcriptional factor, in complex with a target dna 0.9301 263 363
3lsg-assembly2.cif.gz_D the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.9232 262 354
3lsg-assembly3.cif.gz_E the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.92 262 356
ID Description Score Start End Superfamily
5suwA03 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9732 311 365 1.10.10.60
af_P32677_219_275_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9729 314 366 1.10.10.60
3lsgA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9505 318 362 1.10.10.60
4oi3B00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;ORF SCO4226, nickel-binding ferredoxin-like monomer 0.9423 4 78 3.30.70.3090
3lsgC02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9327 318 362 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A7D9H6E2-F1-model_v4 HTH araC/xylS-type domain-containing protein 0.9816 257 361 GO:0003700
GO:0043565
AF-A0A535VYW5-F1-model_v4 DUF4242 domain-containing protein 0.9778 2 80
AF-A0A3T1AXY5-F1-model_v4 Guanylate cyclase 0.9762 1 80
AF-A0A1G8AJA1-F1-model_v4 Helix-turn-helix domain-containing protein 0.965 272 366 GO:0003700
GO:0043565
AF-A0A7W3MX04-F1-model_v4 AraC family transcriptional activator FtrA 0.964 267 365 GO:0003700
GO:0043565

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pLDDT pTM Quality
93.09 0.9 High
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Predicted Structure (AlphaFold2)

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