F203846

General Info

Members Datasets Scaffolds Average Seq Length
148 108 148 366

Family's Representative Sequence

Representative Sequence 3300039437|Ga0436365_0530931|Ga0436365_0530931_5725_6861
Length 378
Sequence MAAVDPGDEKNTPPMVAARRSPVTTALITSCLREELQARLVVLGQPAYRASQVLHGIYRRRARDFAGLSDLPAALRAQLAAEFVFPALTLVRVLGARDTTQKFLFRLSDGQLIESVLIPASPALYGEASDRRTLCVSSQVGCAYGCKFCASGLDGWTRNLQAGEIVEQVLQAEALGGNRVDNLVFMGMGEPLANFDNLLRAIAILNDAEWGLGLGARRMTVSTSGLAPQIRQLADQPRQIRLAISLHGATDEVRSQIMPVNRKYPLAALLDACRYWRSHKKQRLTFEFILIADLNDSPAQAQALAALANELAAKVNLIPYNTVAGLPWLRPPEARCEAFLRTLRARGVAATLRREKGHDIDAACGQLRRQTMQGENGG

Samples

Sample ID Description Type Environment
1 3300001977 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5 Metagenome Rhizosphere
2 3300002077 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
6 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
7 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
8 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
9 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
10 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
11 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
12 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
15 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
16 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
21 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
29 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
30 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
31 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
32 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
35 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
36 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
37 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
38 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
41 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
42 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
43 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
49 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
50 3300025290 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (version 2) Metagenome Rhizosphere
51 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
73 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
74 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
75 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
76 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
77 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
78 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
79 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
80 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
81 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
82 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
83 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
84 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
85 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
86 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
87 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
88 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
89 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
90 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
91 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
92 3300042144 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624F_E14_070516_89 Metagenome Rhizosphere
93 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
94 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
95 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
96 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
97 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
98 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
99 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
101 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
102 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
103 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
104 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
105 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
106 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
107 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
108 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.76
Nodule 0
Rhizoplane 1.35
Rhizosphere 83.11
Stem 0
Stem Tuber 0
Unclassified 8.78

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24746J21847_1000080 3300001977 Bacteria 10383
2 JGI24744J21845_10003080 3300002077 Bacteria 3417
3 rootH2_10001039 3300003320 Bacteria 81374
4 rootH2_10059120 3300003320 Bacteria 3179
5 rootL2_10056047 3300003322 Bacteria 8420
6 JGI25405J52794_10001456 3300003911 Bacteria 3893
7 Ga0065704_10186281 3300005289 Bacteria 1196
8 Ga0065712_10115220 3300005290 Bacteria 1750
9 Ga0065715_10004475 3300005293 Bacteria 5164
10 Ga0065715_10239409 3300005293 Bacteria 1205
11 Ga0070658_10006730 3300005327 Bacteria 9313
12 Ga0070658_10066710 3300005327 Bacteria 2940
13 Ga0070690_100066199 3300005330 Bacteria 2338
14 Ga0070689_100009609 3300005340 Bacteria 6864
15 Ga0070689_100133489 3300005340 Bacteria 1992
16 Ga0070661_100002066 3300005344 Bacteria 13821
17 Ga0070661_100157799 3300005344 Bacteria 1717
18 Ga0070711_100036517 3300005439 Bacteria 3292
19 Ga0070708_100303991 3300005445 Bacteria 1502
20 Ga0070662_100001412 3300005457 Bacteria 14822
21 Ga0068867_100002128 3300005459 Bacteria 13902
22 Ga0070706_100014263 3300005467 Bacteria 7344
23 Ga0070706_100094666 3300005467 Bacteria 2771
24 Ga0070707_100022786 3300005468 Bacteria 5922
25 Ga0070707_100042947 3300005468 Bacteria 4328
26 Ga0070698_100003506 3300005471 Bacteria 17260
27 Ga0070698_100009539 3300005471 Bacteria 10391
28 Ga0070698_100013263 3300005471 Bacteria 8720
29 Ga0070698_100025039 3300005471 Bacteria 6220
30 Ga0070699_100015646 3300005518 Bacteria 6516
31 Ga0070697_100003353 3300005536 Bacteria 12307
32 Ga0070697_100195780 3300005536 Bacteria 1716
33 Ga0070665_100144226 3300005548 Bacteria 2385
34 Ga0068855_100013156 3300005563 Bacteria 9980
35 Ga0070664_100002075 3300005564 Bacteria 16005
36 Ga0068858_100031362 3300005842 Bacteria 4936
37 Ga0068858_100073659 3300005842 Bacteria 3170
38 Ga0068860_100000576 3300005843 Bacteria 44149
39 Ga0068860_100043458 3300005843 Bacteria 4287
40 Ga0081455_10001872 3300005937 Bacteria 25307
41 Ga0081455_10016935 3300005937 Bacteria 7007
42 Ga0081455_10054574 3300005937 Bacteria 3404
43 Ga0081539_10019235 3300005985 Bacteria 4685
44 Ga0070717_10199123 3300006028 Bacteria 1754
45 Ga0070712_100163567 3300006175 Bacteria 1720
46 Ga0075362_10042653 3300006177 Bacteria 2006
47 Ga0075436_100035708 3300006914 Bacteria 3428
48 Ga0105240_10000412 3300009093 Bacteria 79783
49 Ga0105245_10258793 3300009098 Bacteria 1693
50 Ga0105243_10003011 3300009148 Bacteria 13908
51 Ga0105237_10006408 3300009545 Bacteria 13060
52 Ga0105249_10022074 3300009553 Bacteria 5700
53 Ga0099796_10089959 3300010159 Bacteria 1140
54 Ga0105239_10015195 3300010375 Bacteria 8532
55 Ga0105239_10086420 3300010375 Bacteria 3457
56 Ga0105239_10233501 3300010375 Bacteria 2064
57 Ga0105239_10763283 3300010375 Bacteria 1107
58 Ga0105246_10016454 3300011119 Bacteria 4684
59 Ga0157373_10001032 3300013100 Bacteria 21476
60 Ga0157371_10074048 3300013102 Bacteria 2412
61 Ga0157370_10000415 3300013104 Bacteria 53917
62 Ga0157374_10000160 3300013296 Bacteria 62026
63 Ga0157378_10238392 3300013297 Bacteria 1737
64 Ga0163162_10213724 3300013306 Bacteria 2058
65 Ga0157372_10218823 3300013307 Bacteria 2207
66 Ga0157376_10001916 3300014969 Bacteria 13888
67 Ga0157376_10018271 3300014969 Bacteria 5370
68 Ga0213876_10000779 3300021384 Bacteria 21764
69 Ga0213876_10011728 3300021384 Bacteria 4676
70 Ga0207673_1005267 3300025290 Bacteria 1573
71 Ga0209050_1000490 3300025298 Bacteria 68371
72 Ga0207697_10001162 3300025315 Bacteria 14457
73 Ga0207697_10001294 3300025315 Bacteria 13739
74 Ga0207692_10042090 3300025898 Bacteria 2265
75 Ga0207699_10089847 3300025906 Bacteria 1926
76 Ga0207645_10002545 3300025907 Bacteria 14269
77 Ga0207705_10045422 3300025909 Bacteria 3157
78 Ga0207705_10051389 3300025909 Bacteria 2966
79 Ga0207684_10024895 3300025910 Bacteria 5100
80 Ga0207684_10078023 3300025910 Bacteria 2817
81 Ga0207671_10154663 3300025914 Bacteria 1773
82 Ga0207693_10029525 3300025915 Unclassified 4330
83 Ga0207657_10040647 3300025919 Bacteria 4119
84 Ga0207649_10053988 3300025920 Bacteria 2499
85 Ga0207649_10079565 3300025920 Bacteria 2118
86 Ga0207646_10141008 3300025922 Bacteria 2171
87 Ga0207706_10007861 3300025933 Bacteria 9842
88 Ga0207709_10001879 3300025935 Bacteria 13895
89 Ga0207670_10117512 3300025936 Bacteria 1927
90 Ga0207679_10010040 3300025945 Bacteria 6084
91 Ga0207658_10002575 3300025986 Bacteria 13170
92 Ga0207648_10004760 3300026089 Bacteria 13860
93 Ga0207698_10130156 3300026142 Bacteria 2149
94 Ga0268265_10290180 3300028380 Bacteria 1468
95 Ga0268264_10001424 3300028381 Bacteria 22372
96 Ga0265331_10003755 3300031250 Bacteria 9649
97 Ga0265327_10003888 3300031251 Bacteria 13751
98 Ga0265327_10004418 3300031251 Bacteria 12461
99 Ga0307408_100000014 3300031548 Bacteria 377369
100 Ga0307406_10000117 3300031901 Bacteria 46339
101 Ga0307407_10000225 3300031903 Bacteria 16830
102 Ga0307412_10000057 3300031911 Bacteria 145184
103 Ga0307414_10000019 3300032004 Bacteria 235390
104 Ga0307411_10218365 3300032005 Bacteria 1477
105 Ga0373931_0015102 3300035691 Bacteria 3785
106 Ga0373947_0032869 3300035725 Bacteria 3060
107 Ga0373937_0062847 3300036401 Bacteria 3414
108 Ga0395898_0114544 3300037466 Unclassified 2584
109 Ga0436364_1504028 3300037853 Bacteria 2088
110 Ga0395901_0003735 3300038443 Bacteria 15340
111 Ga0395901_0288092 3300038443 Bacteria 1705
112 Ga0436365_0302585 3300039437 Bacteria 2713
113 Ga0436365_0379833 3300039437 Bacteria 8140
114 Ga0436365_0530931 3300039437 Bacteria 35243
115 Ga0436365_1112867 3300039437 Bacteria 50005
116 Ga0436365_1287296 3300039437 Bacteria 12739
117 Ga0436365_1392086 3300039437 Bacteria 2472
118 Ga0436360_1187429 3300039438 Bacteria 2563
119 Ga0436361_0006758 3300039447 Bacteria 10394
120 Ga0436361_0058938 3300039447 Bacteria 13177
121 Ga0436361_0202236 3300039447 Bacteria 1638
122 Ga0436361_0589004 3300039447 Bacteria 3064
123 Ga0436361_0756631 3300039447 Bacteria 4682
124 Ga0436361_1014615 3300039447 Bacteria 5119
125 Ga0436363_1006348 3300039450 Bacteria 15622
126 Ga0450890_000082 3300042127 Bacteria 16195
127 Ga0450892_002438 3300042130 Bacteria 1590
128 Ga0450889_001712 3300042144 Bacteria 2226
129 Ga0450893_0004484 3300042532 Bacteria 2225
130 Ga0451577_0001677 3300042876 Bacteria 28601
131 Ga0451576_0005907 3300045051 Bacteria 15187
132 Ga0495643_0000125 3300046522 Bacteria 124041
133 Ga0496109_0030181 3300048912 Bacteria 4860
134 Ga0496115_0033315 3300048918 Bacteria 4067
135 Ga0501032_0072947 3300049569 Bacteria 2287
136 Ga0501227_000130 3300049665 Bacteria 13500
137 Ga0501080_0007380 3300049742 Bacteria 9921
138 Ga0501080_0035918 3300049742 Bacteria 4626
139 Ga0501080_0088135 3300049742 Bacteria 2883
140 nmdc:mga05p37_4003_c1 3300050507 Bacteria 17226
141 Ga0500610_0061420 3300053079 Bacteria 1962
142 Ga0500555_000011 3300053103 Bacteria 259962
143 Ga0500559_0000655 3300053136 Bacteria 23262
144 Ga0500568_0011669 3300053139 Bacteria 4064
145 Ga0500616_0003284 3300053153 Bacteria 12479
146 Ga0500616_0022166 3300053153 Bacteria 3551
147 Ga0500616_0029263 3300053153 Bacteria 3032
148 Ga0500645_034191 3300053730 Bacteria 1518

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300010159 Ga0099796_10089959 Ga0099796_100899592 316
2 3300010375 Ga0105239_10763283 Ga0105239_107632831 331
3 3300053103 Ga0500555_000011 Ga0500555_000011_73107_74159 342
4 3300053153 Ga0500616_0022166 Ga0500616_0022166_459_1517 344
5 3300049742 Ga0501080_0007380 Ga0501080_0007380_5338_6375 345
6 3300039437 Ga0436365_1392086 Ga0436365_1392086_969_2024 351
7 3300031251 Ga0265327_10004418 Ga0265327_100044185 353
8 3300046522 Ga0495643_0000125 Ga0495643_0000125_4505_5566 353
9 3300042144 Ga0450889_001712 Ga0450889_001712_1147_2211 354
10 3300049569 Ga0501032_0072947 Ga0501032_0072947_986_2050 354
11 3300005445 Ga0070708_100303991 Ga0070708_1003039911 355
12 3300028380 Ga0268265_10290180 Ga0268265_102901801 355
13 3300003320 rootH2_10059120 rootH2_100591202 356
14 3300003322 rootL2_10056047 rootL2_100560472 356
15 3300025298 Ga0209050_1000490 Ga0209050_100049015 356
16 3300037466 Ga0395898_0114544 Ga0395898_0114544_648_1721 356
17 3300038443 Ga0395901_0003735 Ga0395901_0003735_2634_3707 356
18 3300049742 Ga0501080_0035918 Ga0501080_0035918_1330_2400 356
19 3300005340 Ga0070689_100133489 Ga0070689_1001334891 357
20 3300006177 Ga0075362_10042653 Ga0075362_100426533 357
21 3300025936 Ga0207670_10117512 Ga0207670_101175122 357
22 3300053139 Ga0500568_0011669 Ga0500568_0011669_80_1177 357
23 3300005548 Ga0070665_100144226 Ga0070665_1001442263 358
24 3300009098 Ga0105245_10258793 Ga0105245_102587932 358
25 3300036401 Ga0373937_0062847 Ga0373937_0062847_870_1946 358
26 3300053153 Ga0500616_0003284 Ga0500616_0003284_2841_3917 358
27 3300005439 Ga0070711_100036517 Ga0070711_1000365173 359
28 3300005563 Ga0068855_100013156 Ga0068855_1000131564 359
29 3300005985 Ga0081539_10019235 Ga0081539_100192353 359
30 3300006028 Ga0070717_10199123 Ga0070717_101991232 359
31 3300006175 Ga0070712_100163567 Ga0070712_1001635671 359
32 3300009093 Ga0105240_10000412 Ga0105240_1000041221 359
33 3300010375 Ga0105239_10086420 Ga0105239_100864202 359
34 3300013307 Ga0157372_10218823 Ga0157372_102188232 359
35 3300039437 Ga0436365_0530931 Ga0436365_0530931_5725_6861 359
36 3300050507 nmdc:mga05p37_4003_c1 nmdc:mga05p37_4003_c1_7815_8894 359
37 3300005290 Ga0065712_10115220 Ga0065712_101152202 360
38 3300005293 Ga0065715_10004475 Ga0065715_100044752 360
39 3300005327 Ga0070658_10066710 Ga0070658_100667102 360
40 3300005471 Ga0070698_100009539 Ga0070698_1000095393 360
41 3300005937 Ga0081455_10001872 Ga0081455_100018729 360
42 3300010375 Ga0105239_10233501 Ga0105239_102335014 360
43 3300021384 Ga0213876_10000779 Ga0213876_100007799 360
44 3300025290 Ga0207673_1005267 Ga0207673_10052671 360
45 3300025909 Ga0207705_10045422 Ga0207705_100454224 360
46 3300035725 Ga0373947_0032869 Ga0373947_0032869_165_1247 360
47 3300038443 Ga0395901_0288092 Ga0395901_0288092_331_1413 360
48 3300039437 Ga0436365_1112867 Ga0436365_1112867_32102_33184 360
49 3300053079 Ga0500610_0061420 Ga0500610_0061420_618_1712 360
50 3300002077 JGI24744J21845_10003080 JGI24744J21845_100030806 361
51 3300005289 Ga0065704_10186281 Ga0065704_101862811 361
52 3300005468 Ga0070707_100042947 Ga0070707_1000429473 361
53 3300005471 Ga0070698_100013263 Ga0070698_10001326312 361
54 3300005842 Ga0068858_100031362 Ga0068858_1000313622 361
55 3300006914 Ga0075436_100035708 Ga0075436_1000357082 361
56 3300013100 Ga0157373_10001032 Ga0157373_100010328 361
57 3300013102 Ga0157371_10074048 Ga0157371_100740483 361
58 3300013104 Ga0157370_10000415 Ga0157370_100004157 361
59 3300013306 Ga0163162_10213724 Ga0163162_102137242 361
60 3300025315 Ga0207697_10001294 Ga0207697_1000129410 361
61 3300025910 Ga0207684_10024895 Ga0207684_100248956 361
62 3300032004 Ga0307414_10000019 Ga0307414_10000019123 361
63 3300035691 Ga0373931_0015102 Ga0373931_0015102_370_1455 361
64 3300049665 Ga0501227_000130 Ga0501227_000130_4389_5474 361
65 3300053136 Ga0500559_0000655 Ga0500559_0000655_4494_5585 361
66 3300005293 Ga0065715_10239409 Ga0065715_102394091 362
67 3300005327 Ga0070658_10006730 Ga0070658_100067308 362
68 3300005340 Ga0070689_100009609 Ga0070689_1000096092 362
69 3300005344 Ga0070661_100157799 Ga0070661_1001577992 362
70 3300005457 Ga0070662_100001412 Ga0070662_1000014122 362
71 3300005467 Ga0070706_100094666 Ga0070706_1000946663 362
72 3300005471 Ga0070698_100003506 Ga0070698_10000350612 362
73 3300005471 Ga0070698_100025039 Ga0070698_1000250395 362
74 3300005536 Ga0070697_100195780 Ga0070697_1001957802 362
75 3300005843 Ga0068860_100000576 Ga0068860_10000057636 362
76 3300005843 Ga0068860_100043458 Ga0068860_1000434582 362
77 3300009553 Ga0105249_10022074 Ga0105249_100220742 362
78 3300010375 Ga0105239_10015195 Ga0105239_1001519510 362
79 3300025315 Ga0207697_10001162 Ga0207697_1000116214 362
80 3300025907 Ga0207645_10002545 Ga0207645_1000254514 362
81 3300025920 Ga0207649_10079565 Ga0207649_100795651 362
82 3300025933 Ga0207706_10007861 Ga0207706_1000786112 362
83 3300025986 Ga0207658_10002575 Ga0207658_100025752 362
84 3300028381 Ga0268264_10001424 Ga0268264_100014249 362
85 3300039447 Ga0436361_0006758 Ga0436361_0006758_9026_10114 362
86 3300039447 Ga0436361_0058938 Ga0436361_0058938_11098_12186 362
87 3300039447 Ga0436361_0202236 Ga0436361_0202236_196_1284 362
88 3300048912 Ga0496109_0030181 Ga0496109_0030181_1611_2699 362
89 3300048918 Ga0496115_0033315 Ga0496115_0033315_1309_2397 362
90 3300005330 Ga0070690_100066199 Ga0070690_1000661992 363
91 3300013297 Ga0157378_10238392 Ga0157378_102383922 363
92 3300021384 Ga0213876_10011728 Ga0213876_100117283 363
93 3300025898 Ga0207692_10042090 Ga0207692_100420902 363
94 3300025906 Ga0207699_10089847 Ga0207699_100898472 363
95 3300025910 Ga0207684_10078023 Ga0207684_100780233 363
96 3300025915 Ga0207693_10029525 Ga0207693_100295256 363
97 3300025922 Ga0207646_10141008 Ga0207646_101410082 363
98 3300037853 Ga0436364_1504028 Ga0436364_1504028_507_1598 363
99 3300039437 Ga0436365_0379833 Ga0436365_0379833_4506_5597 363
100 3300039438 Ga0436360_1187429 Ga0436360_1187429_999_2090 363
101 3300039447 Ga0436361_0589004 Ga0436361_0589004_296_1387 363
102 3300039447 Ga0436361_0756631 Ga0436361_0756631_353_1444 363
103 3300039447 Ga0436361_1014615 Ga0436361_1014615_986_2077 363
104 3300053730 Ga0500645_034191 Ga0500645_034191_105_1196 363
105 3300003911 JGI25405J52794_10001456 JGI25405J52794_100014566 364
106 3300005467 Ga0070706_100014263 Ga0070706_1000142636 364
107 3300005468 Ga0070707_100022786 Ga0070707_1000227866 364
108 3300005536 Ga0070697_100003353 Ga0070697_10000335310 364
109 3300005937 Ga0081455_10016935 Ga0081455_100169356 364
110 3300005937 Ga0081455_10054574 Ga0081455_100545743 364
111 3300003320 rootH2_10001039 rootH2_1000103927 365
112 3300005518 Ga0070699_100015646 Ga0070699_1000156464 365
113 3300031250 Ga0265331_10003755 Ga0265331_100037554 365
114 3300031251 Ga0265327_10003888 Ga0265327_100038888 365
115 3300031548 Ga0307408_100000014 Ga0307408_100000014232 365
116 3300031903 Ga0307407_10000225 Ga0307407_100002258 365
117 3300031911 Ga0307412_10000057 Ga0307412_1000005711 365
118 3300032005 Ga0307411_10218365 Ga0307411_102183652 365
119 3300039437 Ga0436365_0302585 Ga0436365_0302585_1188_2294 365
120 3300039450 Ga0436363_1006348 Ga0436363_1006348_8391_9497 365
121 3300049742 Ga0501080_0088135 Ga0501080_0088135_1618_2727 365
122 3300001977 JGI24746J21847_1000080 JGI24746J21847_10000805 366
123 3300005344 Ga0070661_100002066 Ga0070661_1000020666 366
124 3300005459 Ga0068867_100002128 Ga0068867_1000021287 366
125 3300005564 Ga0070664_100002075 Ga0070664_1000020757 366
126 3300005842 Ga0068858_100073659 Ga0068858_1000736593 366
127 3300009148 Ga0105243_10003011 Ga0105243_100030117 366
128 3300009545 Ga0105237_10006408 Ga0105237_100064088 366
129 3300011119 Ga0105246_10016454 Ga0105246_100164544 366
130 3300013296 Ga0157374_10000160 Ga0157374_1000016045 366
131 3300014969 Ga0157376_10001916 Ga0157376_100019167 366
132 3300014969 Ga0157376_10018271 Ga0157376_100182713 366
133 3300025909 Ga0207705_10051389 Ga0207705_100513893 366
134 3300025914 Ga0207671_10154663 Ga0207671_101546631 366
135 3300025919 Ga0207657_10040647 Ga0207657_100406473 366
136 3300025920 Ga0207649_10053988 Ga0207649_100539883 366
137 3300025935 Ga0207709_10001879 Ga0207709_100018797 366
138 3300025945 Ga0207679_10010040 Ga0207679_100100402 366
139 3300026089 Ga0207648_10004760 Ga0207648_100047607 366
140 3300026142 Ga0207698_10130156 Ga0207698_101301562 366
141 3300031901 Ga0307406_10000117 Ga0307406_1000011710 366
142 3300039437 Ga0436365_1287296 Ga0436365_1287296_1103_2257 366
143 3300042127 Ga0450890_000082 Ga0450890_000082_1051_2235 366
144 3300042130 Ga0450892_002438 Ga0450892_002438_154_1338 366
145 3300042532 Ga0450893_0004484 Ga0450893_0004484_85_1269 366
146 3300042876 Ga0451577_0001677 Ga0451577_0001677_8170_9306 366
147 3300045051 Ga0451576_0005907 Ga0451576_0005907_12208_13344 366
148 3300053153 Ga0500616_0029263 Ga0500616_0029263_1702_2826 366

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21016

RlmN_N

Ribosomal RNA large subunit methyltransferase N-terminal domain

28

85

0.94

PF04055

Radical_SAM

Radical SAM superfamily

136

303

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
6fz6-assembly2.cif.gz_B crystal structure of a radical sam methyltransferase from sphaerobacter thermophilus 0.9311 8 347
6fz6-assembly2.cif.gz_B crystal structure of a radical sam methyltransferase from sphaerobacter thermophilus 0.9153 8 347
3rfa-assembly2.cif.gz_A x-ray structure of rlmn from escherichia coli in complex with s-adenosylmethionine 0.8913 7 338
4pl1-assembly2.cif.gz_A x-ray crystal structure of c118a rlmn from escherichia coli with s-adenosylmethionine 0.8911 7 338
4pl1-assembly2.cif.gz_A x-ray crystal structure of c118a rlmn from escherichia coli with s-adenosylmethionine 0.8886 7 338
ID Description Score Start End Superfamily
af_A0A1D6MYU6_82_194_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9486 115 221 3.20.20.70
af_Q2FZ66_80_363_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9279 70 356 3.20.20.70
af_A0A1D6FPJ6_15_105_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9228 193 274 3.20.20.70
6fz6B02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9217 70 347 3.20.20.70
4pl1B01 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1; 0.9204 7 68 1.10.150.530
ID Description Score Start End GO Terms
AF-A0A3D2JKG7-F1-model_v4 deleted 0.9764 184 287
AF-A0A7V4J2A9-F1-model_v4 Probable dual-specificity RNA methyltransferase RlmN (EC 2.1.1.192) (23S rRNA (adenine(2503)-C(2))-methyltransferase) (23S rRNA m2A2503 methyltransferase) (Ribosomal RNA large subunit methyltransferase N) (tRNA (adenine(37)-C(2))-methyltransferase) (tRNA m2A37 methyltransferase) 0.9689 2 334 GO:0000049
GO:0002935
GO:0005737
GO:0006355
GO:0019843
GO:0030488
GO:0046872
GO:0051539
GO:0070040
GO:0070475
AF-A0A3A0V329-F1-model_v4 Radical SAM protein 0.9662 160 314 GO:0003824
GO:0030488
GO:0046872
GO:0051539
GO:0070475
AF-A0A4U3AZC1-F1-model_v4 deleted 0.9659 169 298
AF-A0A2V5NT62-F1-model_v4 23S rRNA (Adenine(2503)-C(2))-methyltransferase RlmN 0.9624 58 277 GO:0008168
GO:0030488
GO:0046872
GO:0051539
GO:0070475

Feature Viewer

pLDDT pTM Quality
86.95 0.87 High
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Predicted Structure (AlphaFold2)

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