F204754

General Info

Members Datasets Scaffolds Average Seq Length
149 110 298 656

Family's Representative Sequence

Representative Sequence 3300002773|JGI25152J39213_1000047|JGI25152J39213_100004725
Length 687
Sequence MVESKKHSQNNLKRYFFLLQHSNIKTIQQSLSLHRMENISEKHILEGGYCNSLTQYSRFLTREVNIGDIALGGHNPIRIQSMTTTDTMDTLGTVEQTIRMVESGCEYVRITAPSIKEAENLANIKKELRYRGYNVPLIADIHFTPNAAEMAARIVEKVRVNPGNYADKKKFENIDYTQDAYNAELDRIYKKFIPLVKICKEYGTAMRIGTNHGSLSDRIMSHYGDTPRGMVESAMEFIRMCEDQQYYNLVISMKASNTQVMVQAYRLLVETMTKEGMNYPLHLGVTEAGDGEDGRIKSAVGIGTLLEDGLGDTIRVSLTEDPEFEAPVAKALADRYTRRSSEQLEKHTAPPVQYITYSPYEYNRRITEPVQHIGGHHHPLVMIDVSKENLKDPYFLTAVGYNYSAGLDKYNLADQACDLAYLGDNLPSFSFPGNLKQVYNYKTWLGLKDKHNAHPLFSMEEFNQASLKDEYLNFVQLDADGLNSSILQQLNSTVVLILETSAAHGMAAQRSFFVTLQDQGLQLPVIIKRSYTEVDADNLMLYAATDLGALLTDGFGDGVWIDSPGQNLALINSTSFGILQATRTRISKTEYISCPSCGRTLFDLQETTQLIRSRTDHLKGIKIGIMGCIVNGPGEMADADYGYVGTGPDKITLYRGKEVVKKNVTTAYALDELIGIIKDDGNWVEKL

Samples

Sample ID Description Type Environment
1 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
4 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
5 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
9 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
10 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
11 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
12 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
13 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
14 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
15 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
16 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
17 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
18 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
19 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
20 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
21 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
22 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
23 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
24 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
25 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
26 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
27 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
28 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
29 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
30 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
31 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
32 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
33 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
35 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
36 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
43 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
44 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
45 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
46 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
47 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
48 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
49 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
50 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
51 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
52 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
53 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
54 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
55 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
56 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
57 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
58 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
59 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
60 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
61 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
62 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
63 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
64 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
65 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
66 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
67 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
68 3300049670 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought Metagenome Rhizosphere
69 3300049677 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_A_3_control Metagenome Rhizosphere
70 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
71 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
72 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
73 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
74 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
75 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
76 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
77 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
78 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
79 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
80 2738541283 Pedobacter sp. OK701 Isolate Unclassified
81 2738541284 Pedobacter sp. YR016 Isolate Unclassified
82 2738541302 Pedobacter sp. CF074 Isolate Unclassified
83 2738543023 Pedobacter sp. OK628 Isolate Unclassified
84 2739367651 Pedobacter sp. OK291 Isolate Unclassified
85 2739367656 Pedobacter sp. CF523 Isolate Unclassified
86 2739367663 Pedobacter sp. YR510 Isolate Unclassified
87 2739367866 Hymenobacter sp. YR204 Isolate Unclassified
88 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
89 2818991437 Pedobacter terrae 518 Isolate Unclassified
90 2839989709 Pontibacter arcticus 2b14 Isolate Unclassified
91 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
92 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
93 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
94 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
95 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
96 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
97 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
98 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
99 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
100 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
101 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
102 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
103 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere
104 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
105 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
106 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
107 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
108 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
109 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
110 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 77.18
Metatranscriptomes 0
Isolates 22.82

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.09
Nodule 0
Rhizoplane 0
Rhizosphere 65.1
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25152J39213_1000047 3300002773 Bacteria 84434
2 SwRhRL2b_contig_3916980 2162886007 Bacteria 13112
3 JGI25150J39212_1000001 3300002774 Bacteria 1318726
4 JGI25151J46595_10000001 3300003187 Bacteria 887211
5 JGI25153J46596_10000001 3300003215 Bacteria 748985
6 rootH2_10000644 3300003320 Bacteria 89718
7 rootH1_10034532 3300003323 Bacteria 12890
8 rootH1_10035458 3300003323 Bacteria 14783
9 rootH1_10039025 3300003323 Bacteria 6007
10 Ga0055536_1000004 3300003781 Bacteria 411108
11 Ga0055536_1012769 3300003781 Bacteria 3086
12 Ga0055531_10000197 3300003794 Bacteria 66822
13 Ga0065165_1000266 3300005262 Bacteria 90228
14 Ga0065714_10002286 3300005288 Bacteria 28187
15 Ga0065714_10002967 3300005288 Bacteria 11698
16 Ga0065714_10004142 3300005288 Bacteria 5376
17 Ga0065714_10004277 3300005288 Bacteria 13846
18 Ga0065714_10018154 3300005288 Bacteria 2581
19 Ga0065704_10000436 3300005289 Bacteria 20960
20 Ga0065704_10001282 3300005289 Bacteria 9422
21 Ga0065715_10107786 3300005293 Bacteria 2753
22 Ga0075428_100041073 3300006844 Bacteria 5087
23 Ga0111539_10004615 3300009094 Bacteria 17983
24 Ga0111539_10112709 3300009094 Bacteria 3190
25 Ga0105243_10000036 3300009148 Bacteria 176192
26 Ga0105237_10003323 3300009545 Bacteria 19149
27 Ga0157373_10000698 3300013100 Bacteria 26281
28 Ga0157373_10004093 3300013100 Bacteria 10985
29 Ga0157371_10000041 3300013102 Bacteria 203957
30 Ga0157371_10000691 3300013102 Bacteria 39752
31 Ga0157371_10005437 3300013102 Bacteria 10740
32 Ga0157371_10006837 3300013102 Bacteria 9319
33 Ga0157371_10013279 3300013102 Bacteria 6264
34 Ga0157370_10003392 3300013104 Bacteria 18728
35 Ga0157370_10016272 3300013104 Bacteria 7536
36 Ga0157369_10000016 3300013105 Bacteria 257827
37 Ga0163162_10000165 3300013306 Bacteria 60772
38 Ga0157372_10000437 3300013307 Bacteria 45952
39 Ga0157380_10000013 3300014326 Bacteria 131248
40 Ga0182008_10000014 3300014497 Bacteria 263844
41 Ga0182008_10001372 3300014497 Bacteria 16489
42 Ga0182008_10012162 3300014497 Bacteria 4552
43 Ga0182006_1000801 3300015261 Bacteria 21143
44 Ga0182006_1001127 3300015261 Bacteria 16984
45 Ga0182006_1001602 3300015261 Bacteria 13393
46 Ga0182007_10000002 3300015262 Bacteria 564661
47 Ga0183373_1004 3300015682 Bacteria 537398
48 Ga0163161_10000347 3300017792 Bacteria 39178
49 Ga0163161_10001290 3300017792 Bacteria 18682
50 Ga0163161_10008852 3300017792 Bacteria 6959
51 Ga0163161_10027419 3300017792 Bacteria 4040
52 Ga0207425_1000002 3300025245 Bacteria 1362590
53 Ga0209026_1003594 3300025250 Bacteria 5000
54 Ga0209129_1000002 3300025258 Bacteria 1359086
55 Ga0209676_1000009 3300025292 Bacteria 981719
56 Ga0209676_1000495 3300025292 Bacteria 63184
57 Ga0209025_1000004 3300025294 Bacteria 1361782
58 Ga0209758_1000006 3300025297 Bacteria 1359562
59 Ga0209050_1000048 3300025298 Bacteria 371553
60 Ga0209257_1000006 3300025304 Bacteria 1570111
61 Ga0207671_10019298 3300025914 Bacteria 5214
62 Ga0207709_10000007 3300025935 Bacteria 752025
63 Ga0207702_10031232 3300026078 Bacteria 4439
64 Ga0268264_10069481 3300028381 Bacteria 2979
65 Ga0307515_10003121 3300028794 Bacteria 35023
66 Ga0307515_10019607 3300028794 Bacteria 12152
67 Ga0307515_10115572 3300028794 Bacteria 3090
68 Ga0316177_1161604 3300030731 Bacteria 10312
69 Ga0316183_1003610 3300030742 Bacteria 136078
70 Ga0316181_1101691 3300030744 Bacteria 26221
71 Ga0316576_10010137 3300031727 Bacteria 6109
72 Ga0307405_10000006 3300031731 Bacteria 361477
73 Ga0307405_10014355 3300031731 Bacteria 4257
74 Ga0307406_10056166 3300031901 Bacteria 2520
75 Ga0307407_10000075 3300031903 Bacteria 35183
76 Ga0307412_10002270 3300031911 Bacteria 10634
77 Ga0307412_10010983 3300031911 Bacteria 5230
78 Ga0307416_100000002 3300032002 Bacteria 509907
79 Ga0307416_100004692 3300032002 Bacteria 8278
80 Ga0307414_10001617 3300032004 Bacteria 11716
81 Ga0307414_10006558 3300032004 Bacteria 6496
82 Ga0307414_10008512 3300032004 Bacteria 5823
83 Ga0316583_10003652 3300032133 Bacteria 5435
84 Ga0373927_0073818 3300035695 Bacteria 2209
85 Ga0395899_0000397 3300037312 Bacteria 51693
86 Ga0395905_0000001 3300037471 Bacteria 2037079
87 Ga0395901_0077459 3300038443 Bacteria 3470
88 Ga0453684_0004099 3300044712 Bacteria 31607
89 Ga0451576_0000003 3300045051 Bacteria 1550573
90 Ga0451576_0011915 3300045051 Bacteria 9834
91 Ga0451576_0014012 3300045051 Bacteria 8938
92 Ga0451576_0071433 3300045051 Bacteria 3613
93 Ga0495638_0000025 3300046460 Bacteria 353356
94 Ga0495606_0015829 3300046507 Bacteria 5787
95 Ga0495610_0000099 3300046512 Bacteria 101553
96 Ga0495610_0009184 3300046512 Bacteria 6276
97 Ga0496116_0002245 3300048919 Bacteria 20539
98 Ga0496117_0026622 3300048920 Bacteria 4523
99 Ga0496122_0002491 3300048925 Bacteria 26020
100 Ga0496122_0018607 3300048925 Bacteria 6402
101 Ga0496123_0005145 3300048926 Bacteria 13323
102 Ga0496123_0007363 3300048926 Bacteria 10410
103 Ga0496124_0059031 3300048927 Bacteria 3224
104 Ga0501236_000864 3300049670 Bacteria 3396
105 Ga0501247_001332 3300049677 Bacteria 2346
106 Ga0501257_000320 3300049686 Bacteria 9287
107 Ga0501257_001978 3300049686 Bacteria 4273
108 Ga0501241_004476 3300049758 Bacteria 2619
109 Ga0501264_000018 3300049761 Bacteria 25053
110 nmdc:mga08y16_9651_c1 3300050511 Bacteria 10134
111 Ga0500651_0001234 3300053093 Bacteria 12714
112 Ga0500616_0000024 3300053153 Bacteria 455811
113 Ga0500616_0015895 3300053153 Bacteria 4294
114 Ga0500622_0000018 3300053156 Bacteria 307548
115 Ga0500622_0000076 3300053156 Bacteria 108680
116 2522551488 2522125168 Bacteria 7376607
117 2586208097 2585427687 Bacteria 5544917
118 2722730513 2721755487 Bacteria 6357185
119 2738756860 2738541283 Bacteria 7222293
120 2738760103 2738541284 Bacteria 5199923
121 2738856565 2738541302 Bacteria 5944758
122 2739304980 2738543023 Bacteria 6767879
123 2739588111 2739367651 Bacteria 6359826
124 2739616206 2739367656 Bacteria 5152243
125 2739646865 2739367663 Bacteria 5040914
126 2740032772 2739367866 Bacteria 4215900
127 2776612082 2775506987 Bacteria 5373360
128 2819546007 2818991437 Bacteria 5805520
129 2839991458 2839989709 Bacteria 3773432
130 2842724092 2842722452 Bacteria 6263924
131 2842909542 2842903701 Bacteria 6986368
132 2842912177 2842909656 Bacteria 6185908
133 2849282407 2849281842 Bacteria 6065644
134 2852631736 2852627209 Bacteria 5896285
135 2857631308 2857627736 Bacteria 5625397
136 2896321060 2896317667 Bacteria 4606601
137 2896346340 2896344016 Bacteria 3811746
138 2902052380 2902048731 Bacteria 4976191
139 2904446268 2904445276 Bacteria 5310396
140 2904785495 2904780799 Bacteria 5840761
141 2910247509 2910245624 Bacteria 6935613
142 2911141091 2911138879 Bacteria 5811561
143 2919182042 2919177583 Bacteria 5641607
144 2919191418 2919186247 Bacteria 6244071
145 2939669663 2939664404 Bacteria 6364494
146 2945999092 2945997725 Bacteria 6404843
147 2954021544 2954016120 Bacteria 6446024
148 3003234764 3003233435 Bacteria 4458031
149 8055590006 8055588893 Bacteria 3619545
150 JGI25152J39213_1000047
151 SwRhRL2b_contig_3916980
152 JGI25150J39212_1000001
153 JGI25151J46595_10000001
154 JGI25153J46596_10000001
155 rootH2_10000644
156 rootH1_10034532
157 rootH1_10035458
158 rootH1_10039025
159 Ga0055536_1000004
160 Ga0055536_1012769
161 Ga0055531_10000197
162 Ga0065165_1000266
163 Ga0065714_10002286
164 Ga0065714_10002967
165 Ga0065714_10004142
166 Ga0065714_10004277
167 Ga0065714_10018154
168 Ga0065704_10000436
169 Ga0065704_10001282
170 Ga0065715_10107786
171 Ga0075428_100041073
172 Ga0111539_10004615
173 Ga0111539_10112709
174 Ga0105243_10000036
175 Ga0105237_10003323
176 Ga0157373_10000698
177 Ga0157373_10004093
178 Ga0157371_10000041
179 Ga0157371_10000691
180 Ga0157371_10005437
181 Ga0157371_10006837
182 Ga0157371_10013279
183 Ga0157370_10003392
184 Ga0157370_10016272
185 Ga0157369_10000016
186 Ga0163162_10000165
187 Ga0157372_10000437
188 Ga0157380_10000013
189 Ga0182008_10000014
190 Ga0182008_10001372
191 Ga0182008_10012162
192 Ga0182006_1000801
193 Ga0182006_1001127
194 Ga0182006_1001602
195 Ga0182007_10000002
196 Ga0183373_1004
197 Ga0163161_10000347
198 Ga0163161_10001290
199 Ga0163161_10008852
200 Ga0163161_10027419
201 Ga0207425_1000002
202 Ga0209026_1003594
203 Ga0209129_1000002
204 Ga0209676_1000009
205 Ga0209676_1000495
206 Ga0209025_1000004
207 Ga0209758_1000006
208 Ga0209050_1000048
209 Ga0209257_1000006
210 Ga0207671_10019298
211 Ga0207709_10000007
212 Ga0207702_10031232
213 Ga0268264_10069481
214 Ga0307515_10003121
215 Ga0307515_10019607
216 Ga0307515_10115572
217 Ga0316177_1161604
218 Ga0316183_1003610
219 Ga0316181_1101691
220 Ga0316576_10010137
221 Ga0307405_10000006
222 Ga0307405_10014355
223 Ga0307406_10056166
224 Ga0307407_10000075
225 Ga0307412_10002270
226 Ga0307412_10010983
227 Ga0307416_100000002
228 Ga0307416_100004692
229 Ga0307414_10001617
230 Ga0307414_10006558
231 Ga0307414_10008512
232 Ga0316583_10003652
233 Ga0373927_0073818
234 Ga0395899_0000397
235 Ga0395905_0000001
236 Ga0395901_0077459
237 Ga0453684_0004099
238 Ga0451576_0000003
239 Ga0451576_0011915
240 Ga0451576_0014012
241 Ga0451576_0071433
242 Ga0495638_0000025
243 Ga0495606_0015829
244 Ga0495610_0000099
245 Ga0495610_0009184
246 Ga0496116_0002245
247 Ga0496117_0026622
248 Ga0496122_0002491
249 Ga0496122_0018607
250 Ga0496123_0005145
251 Ga0496123_0007363
252 Ga0496124_0059031
253 Ga0501236_000864
254 Ga0501247_001332
255 Ga0501257_000320
256 Ga0501257_001978
257 Ga0501241_004476
258 Ga0501264_000018
259 nmdc:mga08y16_9651_c1
260 Ga0500651_0001234
261 Ga0500616_0000024
262 Ga0500616_0015895
263 Ga0500622_0000018
264 Ga0500622_0000076
265 2522551488
266 2586208097
267 2722730513
268 2738756860
269 2738760103
270 2738856565
271 2739304980
272 2739588111
273 2739616206
274 2739646865
275 2740032772
276 2776612082
277 2819546007
278 2839991458
279 2842724092
280 2842909542
281 2842912177
282 2849282407
283 2852631736
284 2857631308
285 2896321060
286 2896346340
287 2902052380
288 2904446268
289 2904785495
290 2910247509
291 2911141091
292 2919182042
293 2919191418
294 2939669663
295 2945999092
296 2954021544
297 3003234764
298 8055590006

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04551

GcpE

GcpE protein

61

387

0.95

PF04551

GcpE

GcpE protein

532

679

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
4mwa-assembly3.cif.gz_D 1.85 angstrom crystal structure of gcpe protein from bacillus anthracis 0.9024 26 306
4mwa-assembly2.cif.gz_F 1.85 angstrom crystal structure of gcpe protein from bacillus anthracis 0.8972 24 306
4mwa-assembly3.cif.gz_C 1.85 angstrom crystal structure of gcpe protein from bacillus anthracis 0.896 23 305
4mwa-assembly3.cif.gz_D 1.85 angstrom crystal structure of gcpe protein from bacillus anthracis 0.8886 26 306
4mwa-assembly3.cif.gz_C 1.85 angstrom crystal structure of gcpe protein from bacillus anthracis 0.8761 23 305
ID Description Score Start End Superfamily
af_Q8IJH7_724_823_3.30.413.10 Alpha Beta;2-Layer Sandwich;Sulfite Reductase Hemoprotein; domain 1;Sulfite Reductase Hemoprotein, domain 1 0.97 563 660 3.30.413.10
af_Q8IJH7_114_401_3.20.20.20 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Dihydropteroate synthase-like 0.961 24 307 3.20.20.20
af_Q8IJH7_114_401_3.20.20.20 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Dihydropteroate synthase-like 0.9448 24 307 3.20.20.20
af_Q8IJH7_724_823_3.30.413.10 Alpha Beta;2-Layer Sandwich;Sulfite Reductase Hemoprotein; domain 1;Sulfite Reductase Hemoprotein, domain 1 0.9418 563 660 3.30.413.10
3noyC01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Dihydropteroate synthase-like 0.9138 24 303 3.20.20.20
ID Description Score Start End GO Terms
AF-A0A3B0UB20-F1-model_v4 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (Flavodoxin) (EC 1.17.7.3) 0.9887 26 112 GO:0016114
GO:0019288
GO:0046429
GO:0141197
AF-A0A2V5TNI1-F1-model_v4 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 0.9859 34 131 GO:0016114
GO:0019288
GO:0046429
AF-A0A382FGX5-F1-model_v4 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 0.9796 34 134 GO:0016114
GO:0019288
GO:0046429
AF-A0A520A6V8-F1-model_v4 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 0.975 563 661 GO:0016114
GO:0019288
GO:0046429
GO:0046872
GO:0051536
AF-A0A800E8N7-F1-model_v4 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 0.9746 18 258 GO:0016114
GO:0019288
GO:0046429

Map