F207349

General Info

Members Datasets Scaffolds Average Seq Length
149 91 138 283

Family's Representative Sequence

Representative Sequence 3300053136|Ga0500559_0030353|Ga0500559_0030353_346_1353
Length 326
Sequence MMGISILTIVRNRSAHLEQLVEGLRRSGRQPDELVVVDMSDVPVNVAPASFPIRIDRFATEGLPLAAARNRAAALARYETLIFLDVDCIPLEACVGTLALCADVRYLGPDDARSPWTEANLLEHGRQHPVRAFPLDGLREEENPGLFWSLAFALRRPRFVALGGFDEAFTGYGAEDTDFGFRAVRAGLKLLFVGRAIACHQHHDSYEPPVQHVEDIVRNARCFHARWGTWPMEGWLEAFARLGLVQWRDDRLCFIRRPTAYEMASAYVSPTKAKPSSCAIEVECARHHHDRHLSSEPSAHEHSGAQATSEARWLAEPSGNAAEEPR

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
3 2808606401 Sphingobium sp. AEW010 Isolate Rhizosphere
4 2808606404 Sphingobium sp. AEW013 Isolate Rhizosphere
5 2808606405 Sphingobium sp. AEW001 Isolate Rhizosphere
6 2818991438 Novosphingobium barchaimii 1192 Isolate Unclassified
7 2880518877 Sphingobium sp. JAI105 Isolate Rhizosphere
8 2919709256 Sphingobium xenophagum 4256 Isolate Unclassified
9 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
10 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
11 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
12 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
13 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
16 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
17 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
18 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
19 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
20 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
21 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
22 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
23 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
24 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
25 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
28 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
29 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
40 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
43 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
44 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
45 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
46 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
47 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
48 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
49 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
50 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
51 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
52 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
53 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
54 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
55 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
56 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
57 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
58 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
59 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
60 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
61 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
62 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
63 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
64 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
65 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
66 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
67 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
68 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
69 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
70 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
71 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
72 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
73 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
74 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
75 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
76 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
77 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
78 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
79 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
80 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
81 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
82 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
83 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
84 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
85 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
86 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
87 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
88 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
89 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
90 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
91 8054302542 Novosphingobium kaempferiae Sx8-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.62
Metatranscriptomes 0
Isolates 7.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.77
Nodule 0
Rhizoplane 0.67
Rhizosphere 66.44
Stem 0
Stem Tuber 0
Unclassified 18.12

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2237776 2162886007 Bacteria 72079
2 Ga0055532_1003553 3300003758 Bacteria 2625
3 Ga0055530_10017669 3300003791 Bacteria 2226
4 Ga0065704_10070144 3300005289 Bacteria 333223
5 Ga0070666_10003329 3300005335 Bacteria 9740
6 Ga0070668_100000865 3300005347 Bacteria 21037
7 Ga0070667_100000103 3300005367 Bacteria 107232
8 Ga0068854_100024497 3300005578 Bacteria 4132
9 Ga0068863_100005747 3300005841 Bacteria 12169
10 Ga0068860_100002787 3300005843 Bacteria 18176
11 Ga0068862_100042931 3300005844 Bacteria 3853
12 Ga0075368_10001873 3300006042 Bacteria 6749
13 Ga0075363_100049640 3300006048 Eukaryota 2235
14 Ga0075367_10004608 3300006178 Bacteria 6749
15 Ga0075370_10090193 3300006353 Unclassified 1768
16 Ga0105240_10012198 3300009093 Bacteria 11888
17 Ga0105240_10032500 3300009093 Bacteria 6755
18 Ga0105243_10117047 3300009148 Unclassified 2240
19 Ga0105237_10001158 3300009545 Bacteria 35321
20 Ga0105237_10034077 3300009545 Bacteria 5158
21 Ga0105239_10000157 3300010375 Bacteria 98327
22 Ga0157370_10472356 3300013104 Bacteria 1152
23 Ga0163161_10002958 3300017792 Bacteria 12044
24 Ga0209147_100524 3300025229 Bacteria 22080
25 Ga0209147_100883 3300025229 Bacteria 13794
26 Ga0209050_1000685 3300025298 Bacteria 50959
27 Ga0207680_10005721 3300025903 Bacteria 5957
28 Ga0207695_10003859 3300025913 Bacteria 20743
29 Ga0207695_10009474 3300025913 Bacteria 12045
30 Ga0207695_10316869 3300025913 Bacteria 1449
31 Ga0207671_10002311 3300025914 Bacteria 20570
32 Ga0207671_10014662 3300025914 Bacteria 6182
33 Ga0207681_10015717 3300025923 Bacteria 4725
34 Ga0207668_10000231 3300025972 Bacteria 37525
35 Ga0207640_10043678 3300025981 Bacteria 2866
36 Ga0207658_10000080 3300025986 Bacteria 107226
37 Ga0207641_10002673 3300026088 Bacteria 16282
38 Ga0209813_10000880 3300027866 Bacteria 6762
39 Ga0268265_10028627 3300028380 Bacteria 3991
40 Ga0268264_10034145 3300028381 Bacteria 4183
41 Ga0451843_0672988 3300041509 Unclassified 1063
42 Ga0495627_000327 3300046453 Bacteria 46070
43 Ga0495627_000342 3300046453 Bacteria 43925
44 Ga0495627_001353 3300046453 Bacteria 14746
45 Ga0495650_0001133 3300046471 Bacteria 28973
46 Ga0495650_0041993 3300046471 Bacteria 1951
47 Ga0495584_0043517 3300046491 Bacteria 2266
48 Ga0495596_0000246 3300046500 Bacteria 36477
49 Ga0495596_0001785 3300046500 Bacteria 11993
50 Ga0495607_0056102 3300046501 Bacteria 2262
51 Ga0495607_0064384 3300046501 Bacteria 2071
52 Ga0495583_0000236 3300046506 Bacteria 91911
53 Ga0495606_0033426 3300046507 Bacteria 3547
54 Ga0495610_0000170 3300046512 Bacteria 72711
55 Ga0495610_0000330 3300046512 Bacteria 50217
56 Ga0495610_0000890 3300046512 Bacteria 27765
57 Ga0495610_0002813 3300046512 Bacteria 14202
58 Ga0495610_0008206 3300046512 Bacteria 6803
59 Ga0495610_0010724 3300046512 Bacteria 5667
60 Ga0495616_0000018 3300046513 Bacteria 167281
61 Ga0495620_0001030 3300046515 Bacteria 17131
62 Ga0495620_0007300 3300046515 Bacteria 6017
63 Ga0495632_0000096 3300046519 Bacteria 89284
64 Ga0495632_0000722 3300046519 Bacteria 30013
65 Ga0495632_0002047 3300046519 Bacteria 15852
66 Ga0495632_0010245 3300046519 Bacteria 5570
67 Ga0495632_0053934 3300046519 Bacteria 1972
68 Ga0495637_0001579 3300046520 Bacteria 13220
69 Ga0495643_0000039 3300046522 Bacteria 235175
70 Ga0495643_0000068 3300046522 Bacteria 172115
71 Ga0495643_0003445 3300046522 Bacteria 11569
72 Ga0495643_0024516 3300046522 Bacteria 3421
73 Ga0495643_0146797 3300046522 Unclassified 1171
74 Ga0495648_0005637 3300046524 Bacteria 10363
75 Ga0495648_0008891 3300046524 Bacteria 7849
76 Ga0495648_0035452 3300046524 Bacteria 3234
77 Ga0495663_0000016 3300046525 Bacteria 142125
78 Ga0495654_0127732 3300046530 Bacteria 1144
79 Ga0495609_0003244 3300046538 Bacteria 9423
80 Ga0495609_0004123 3300046538 Bacteria 8075
81 Ga0495633_0000420 3300046558 Bacteria 44087
82 Ga0495633_0002551 3300046558 Bacteria 12770
83 Ga0495633_0092748 3300046558 Bacteria 1403
84 Ga0495668_0004599 3300046616 Bacteria 9710
85 Ga0495611_0040790 3300046648 Bacteria 2070
86 Ga0495625_0000539 3300046660 Bacteria 55703
87 Ga0495671_0000040 3300046692 Bacteria 167933
88 Ga0495671_0000045 3300046692 Bacteria 159097
89 Ga0495671_0086452 3300046692 Bacteria 1536
90 Ga0495672_0098313 3300047320 Bacteria 1592
91 Ga0495683_0228434 3300047323 Bacteria 826
92 Ga0495673_0000063 3300047469 Bacteria 225912
93 Ga0495673_0092861 3300047469 Bacteria 1231
94 Ga0495681_0000003 3300047470 Bacteria 245567
95 Ga0495681_0000061 3300047470 Bacteria 99933
96 Ga0495686_0000293 3300047472 Bacteria 87130
97 Ga0495686_0001266 3300047472 Bacteria 28620
98 Ga0495686_0002902 3300047472 Bacteria 15392
99 Ga0495686_0003604 3300047472 Bacteria 13280
100 Ga0495686_0116618 3300047472 Bacteria 1596
101 Ga0495615_0000006 3300048090 Bacteria 96050
102 Ga0495626_0025206 3300048091 Bacteria 2910
103 Ga0496101_0120281 3300048904 Bacteria 1985
104 Ga0496116_0000256 3300048919 Bacteria 93252
105 Ga0496118_0051239 3300048921 Bacteria 3160
106 Ga0496121_0000213 3300048924 Bacteria 127487
107 Ga0496121_0001109 3300048924 Bacteria 47457
108 Ga0496121_0028993 3300048924 Bacteria 5135
109 Ga0496121_0132817 3300048924 Bacteria 1859
110 Ga0496121_0226288 3300048924 Unclassified 1313
111 Ga0496122_0001025 3300048925 Bacteria 49395
112 Ga0496122_0002706 3300048925 Bacteria 24628
113 Ga0496122_0003344 3300048925 Bacteria 21157
114 Ga0496123_0001640 3300048926 Bacteria 30081
115 Ga0496123_0002064 3300048926 Bacteria 25907
116 Ga0496123_0006924 3300048926 Bacteria 10832
117 Ga0496123_0148484 3300048926 Bacteria 1269
118 Ga0496124_0000316 3300048927 Bacteria 89321
119 Ga0496124_0005553 3300048927 Bacteria 14128
120 Ga0496124_0052751 3300048927 Bacteria 3453
121 Ga0496125_0011168 3300048928 Bacteria 9004
122 Ga0496125_0023850 3300048928 Bacteria 5639
123 Ga0496125_0255538 3300048928 Unclassified 1102
124 Ga0496126_0001914 3300048929 Bacteria 29857
125 Ga0496126_0014443 3300048929 Bacteria 7982
126 Ga0496126_0120418 3300048929 Bacteria 2277
127 nmdc:mga03n38_11743_c1 3300050490 Unclassified 3273
128 nmdc:mga06z11_2736_c1 3300050494 Bacteria 6763
129 nmdc:mga04h51_930_c1 3300050495 Bacteria 6763
130 nmdc:mga07m45_145045_c1 3300050496 Eukaryota 1376
131 Ga0500643_000142 3300053087 Bacteria 72343
132 Ga0500647_0064349 3300053091 Bacteria 1764
133 Ga0500562_002687 3300053108 Bacteria 4421
134 Ga0500559_0002629 3300053136 Bacteria 9164
135 Ga0500559_0023477 3300053136 Bacteria 2618
136 Ga0500559_0030353 3300053136 Bacteria 2317
137 Ga0500627_0000820 3300053158 Bacteria 8299
138 Ga0500661_001627 3300055283 Plasmid 4236

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048091 Ga0495626_0025206 Ga0495626_0025206_29_730 231
2 3300048924 Ga0496121_0132817 Ga0496121_0132817_35_778 241
3 iso_pu_bacteria 2880518877 2880522544 242
4 3300047323 Ga0495683_0228434 Ga0495683_0228434_78_812 243
5 3300048926 Ga0496123_0148484 Ga0496123_0148484_483_1256 257
6 3300046530 Ga0495654_0127732 Ga0495654_0127732_11_811 265
7 iso_pu_bacteria 8054302542 8054307157 270
8 3300003791 Ga0055530_10017669 Ga0055530_100176691 271
9 3300025298 Ga0209050_1000685 Ga0209050_100068516 271
10 3300048924 Ga0496121_0028993 Ga0496121_0028993_3501_4337 271
11 3300048927 Ga0496124_0000316 Ga0496124_0000316_46289_47125 271
12 iso_pu_bacteria 2818991438 2819554495 273
13 iso_pu_bacteria 8054302542 8054307272 273
14 3300006042 Ga0075368_10001873 Ga0075368_100018736 276
15 3300006048 Ga0075363_100049640 Ga0075363_1000496402 276
16 3300006178 Ga0075367_10004608 Ga0075367_100046086 276
17 3300006353 Ga0075370_10090193 Ga0075370_100901932 276
18 3300009148 Ga0105243_10117047 Ga0105243_101170472 276
19 3300027866 Ga0209813_10000880 Ga0209813_100008805 276
20 3300046471 Ga0495650_0041993 Ga0495650_0041993_881_1717 276
21 3300046524 Ga0495648_0005637 Ga0495648_0005637_6334_7170 276
22 3300048090 Ga0495615_0000006 Ga0495615_0000006_15504_16355 276
23 3300048925 Ga0496122_0003344 Ga0496122_0003344_12724_13575 276
24 3300048926 Ga0496123_0002064 Ga0496123_0002064_10031_10882 276
25 3300050490 nmdc:mga03n38_11743_c1 nmdc:mga03n38_11743_c1_510_1352 276
26 3300050494 nmdc:mga06z11_2736_c1 nmdc:mga06z11_2736_c1_2883_3725 276
27 3300050495 nmdc:mga04h51_930_c1 nmdc:mga04h51_930_c1_3039_3881 276
28 3300050496 nmdc:mga07m45_145045_c1 nmdc:mga07m45_145045_c1_461_1303 276
29 iso_pu_bacteria 2510917021 2511127841 276
30 iso_pu_bacteria 2510917021 2511130642 276
31 iso_pu_bacteria 2919709256 2919713109 276
32 3300017792 Ga0163161_10002958 Ga0163161_100029589 278
33 3300046453 Ga0495627_001353 Ga0495627_001353_1354_2211 278
34 3300046512 Ga0495610_0010724 Ga0495610_0010724_2722_3579 278
35 3300046522 Ga0495643_0000039 Ga0495643_0000039_220793_221632 278
36 3300046648 Ga0495611_0040790 Ga0495611_0040790_1193_2035 278
37 3300047320 Ga0495672_0098313 Ga0495672_0098313_94_951 278
38 3300047470 Ga0495681_0000003 Ga0495681_0000003_150938_151795 278
39 3300047472 Ga0495686_0002902 Ga0495686_0002902_2331_3188 278
40 3300048928 Ga0496125_0023850 Ga0496125_0023850_3170_4012 278
41 3300053087 Ga0500643_000142 Ga0500643_000142_35781_36623 278
42 3300053136 Ga0500559_0002629 Ga0500559_0002629_989_1831 278
43 iso_pu_bacteria 2808606401 2809065070 278
44 iso_pu_bacteria 2808606404 2809080966 278
45 iso_pu_bacteria 2808606405 2809085331 278
46 3300005335 Ga0070666_10003329 Ga0070666_1000332911 279
47 3300005347 Ga0070668_100000865 Ga0070668_10000086510 279
48 3300005367 Ga0070667_100000103 Ga0070667_10000010322 279
49 3300005841 Ga0068863_100005747 Ga0068863_1000057472 279
50 3300005843 Ga0068860_100002787 Ga0068860_1000027877 279
51 3300005844 Ga0068862_100042931 Ga0068862_1000429316 279
52 3300009093 Ga0105240_10012198 Ga0105240_1001219812 279
53 3300009093 Ga0105240_10032500 Ga0105240_100325005 279
54 3300009545 Ga0105237_10001158 Ga0105237_1000115842 279
55 3300010375 Ga0105239_10000157 Ga0105239_1000015790 279
56 3300013104 Ga0157370_10472356 Ga0157370_104723561 279
57 3300025903 Ga0207680_10005721 Ga0207680_100057212 279
58 3300025913 Ga0207695_10003859 Ga0207695_100038596 279
59 3300025913 Ga0207695_10009474 Ga0207695_1000947412 279
60 3300025913 Ga0207695_10316869 Ga0207695_103168691 279
61 3300025914 Ga0207671_10014662 Ga0207671_100146626 279
62 3300025923 Ga0207681_10015717 Ga0207681_100157177 279
63 3300025972 Ga0207668_10000231 Ga0207668_1000023115 279
64 3300025986 Ga0207658_10000080 Ga0207658_1000008084 279
65 3300026088 Ga0207641_10002673 Ga0207641_1000267315 279
66 3300028380 Ga0268265_10028627 Ga0268265_100286272 279
67 3300028381 Ga0268264_10034145 Ga0268264_100341456 279
68 3300046453 Ga0495627_000327 Ga0495627_000327_38326_39171 279
69 3300046453 Ga0495627_000342 Ga0495627_000342_34059_34904 279
70 3300046471 Ga0495650_0001133 Ga0495650_0001133_5550_6395 279
71 3300046500 Ga0495596_0000246 Ga0495596_0000246_6413_7258 279
72 3300046500 Ga0495596_0001785 Ga0495596_0001785_5354_6199 279
73 3300046501 Ga0495607_0056102 Ga0495607_0056102_1099_1944 279
74 3300046501 Ga0495607_0064384 Ga0495607_0064384_1075_1920 279
75 3300046506 Ga0495583_0000236 Ga0495583_0000236_31903_32748 279
76 3300046507 Ga0495606_0033426 Ga0495606_0033426_970_1815 279
77 3300046512 Ga0495610_0000170 Ga0495610_0000170_35478_36338 279
78 3300046512 Ga0495610_0000330 Ga0495610_0000330_14786_15631 279
79 3300046512 Ga0495610_0002813 Ga0495610_0002813_5748_6593 279
80 3300046512 Ga0495610_0008206 Ga0495610_0008206_5748_6593 279
81 3300046515 Ga0495620_0001030 Ga0495620_0001030_10395_11240 279
82 3300046515 Ga0495620_0007300 Ga0495620_0007300_1947_2792 279
83 3300046519 Ga0495632_0000722 Ga0495632_0000722_13772_14617 279
84 3300046519 Ga0495632_0002047 Ga0495632_0002047_5913_6758 279
85 3300046519 Ga0495632_0010245 Ga0495632_0010245_2337_3182 279
86 3300046519 Ga0495632_0053934 Ga0495632_0053934_475_1320 279
87 3300046522 Ga0495643_0003445 Ga0495643_0003445_10138_10983 279
88 3300046522 Ga0495643_0024516 Ga0495643_0024516_1125_1970 279
89 3300046524 Ga0495648_0008891 Ga0495648_0008891_5869_6714 279
90 3300046524 Ga0495648_0035452 Ga0495648_0035452_389_1234 279
91 3300046538 Ga0495609_0003244 Ga0495609_0003244_5652_6497 279
92 3300046538 Ga0495609_0004123 Ga0495609_0004123_7002_7847 279
93 3300046558 Ga0495633_0000420 Ga0495633_0000420_22722_23567 279
94 3300046558 Ga0495633_0092748 Ga0495633_0092748_24_869 279
95 3300046660 Ga0495625_0000539 Ga0495625_0000539_48620_49465 279
96 3300046692 Ga0495671_0000045 Ga0495671_0000045_138404_139249 279
97 3300046692 Ga0495671_0086452 Ga0495671_0086452_293_1138 279
98 3300047469 Ga0495673_0000063 Ga0495673_0000063_144923_145768 279
99 3300047470 Ga0495681_0000061 Ga0495681_0000061_26030_26875 279
100 3300047472 Ga0495686_0116618 Ga0495686_0116618_219_1064 279
101 3300048925 Ga0496122_0001025 Ga0496122_0001025_10683_11543 279
102 3300048926 Ga0496123_0006924 Ga0496123_0006924_6733_7593 279
103 3300048929 Ga0496126_0120418 Ga0496126_0120418_585_1445 279
104 3300053091 Ga0500647_0064349 Ga0500647_0064349_420_1268 279
105 3300053108 Ga0500562_002687 Ga0500562_002687_745_1593 279
106 3300055283 Ga0500661_001627 Ga0500661_001627_1220_2080 279
107 3300041509 Ga0451843_0672988 Ga0451843_0672988_64_909 280
108 3300048904 Ga0496101_0120281 Ga0496101_0120281_945_1808 280
109 3300048919 Ga0496116_0000256 Ga0496116_0000256_6496_7359 280
110 3300048921 Ga0496118_0051239 Ga0496118_0051239_438_1301 280
111 3300048924 Ga0496121_0226288 Ga0496121_0226288_92_952 280
112 3300048925 Ga0496122_0002706 Ga0496122_0002706_17862_18725 280
113 3300048926 Ga0496123_0001640 Ga0496123_0001640_5904_6767 280
114 3300048927 Ga0496124_0005553 Ga0496124_0005553_6396_7259 280
115 3300048927 Ga0496124_0052751 Ga0496124_0052751_852_1712 280
116 3300048928 Ga0496125_0011168 Ga0496125_0011168_1338_2201 280
117 3300048928 Ga0496125_0255538 Ga0496125_0255538_40_900 280
118 3300048929 Ga0496126_0001914 Ga0496126_0001914_23314_24177 280
119 3300025229 Ga0209147_100524 Ga0209147_1005249 281
120 3300047469 Ga0495673_0092861 Ga0495673_0092861_30_896 281
121 3300053136 Ga0500559_0023477 Ga0500559_0023477_1723_2574 281
122 3300047472 Ga0495686_0000293 Ga0495686_0000293_14244_15101 283
123 3300046512 Ga0495610_0000890 Ga0495610_0000890_24395_25261 284
124 3300046522 Ga0495643_0146797 Ga0495643_0146797_216_1082 284
125 3300053136 Ga0500559_0030353 Ga0500559_0030353_346_1353 284
126 3300003758 Ga0055532_1003553 Ga0055532_10035533 286
127 3300025229 Ga0209147_100883 Ga0209147_1008837 286
128 iso_pu_bacteria 2818991438 2819555582 288
129 3300046513 Ga0495616_0000018 Ga0495616_0000018_90731_91609 290
130 3300046616 Ga0495668_0004599 Ga0495668_0004599_5475_6353 290
131 3300053158 Ga0500627_0000820 Ga0500627_0000820_1549_2427 290
132 3300005578 Ga0068854_100024497 Ga0068854_1000244975 292
133 3300009545 Ga0105237_10034077 Ga0105237_100340777 292
134 3300025914 Ga0207671_10002311 Ga0207671_1000231112 292
135 3300025981 Ga0207640_10043678 Ga0207640_100436782 292
136 3300046491 Ga0495584_0043517 Ga0495584_0043517_53_976 292
137 3300046519 Ga0495632_0000096 Ga0495632_0000096_45601_46509 292
138 3300046520 Ga0495637_0001579 Ga0495637_0001579_7446_8369 292
139 3300046522 Ga0495643_0000068 Ga0495643_0000068_154560_155483 292
140 3300046525 Ga0495663_0000016 Ga0495663_0000016_1602_2510 292
141 3300046558 Ga0495633_0002551 Ga0495633_0002551_11712_12620 292
142 3300046692 Ga0495671_0000040 Ga0495671_0000040_150378_151301 292
143 3300047472 Ga0495686_0001266 Ga0495686_0001266_9899_10780 292
144 3300047472 Ga0495686_0003604 Ga0495686_0003604_11082_12002 292
145 3300048924 Ga0496121_0000213 Ga0496121_0000213_52065_53003 292
146 3300048924 Ga0496121_0001109 Ga0496121_0001109_42275_43177 292
147 3300048929 Ga0496126_0014443 Ga0496126_0014443_1509_2447 292
148 2162886007 SwRhRL2b_contig_2237776 SwRhRL2b_0434.00008020 293
149 3300005289 Ga0065704_10070144 Ga0065704_10070144245 293

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00535

Glycos_transf_2

Glycosyl transferase family 2

5

153

0.89

PF02709

Glyco_transf_7C

N-terminal domain of galactosyltransferase

142

204

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
2z87-assembly2.cif.gz_A crystal structure of chondroitin polymerase from escherichia coli strain k4 (k4cp) complexed with udp-galnac and udp 0.7761 2 210
2d7i-assembly1.cif.gz_A crystal structure of pp-galnac-t10 with udp, galnac and mn2+ 0.7753 2 209
2z86-assembly2.cif.gz_D crystal structure of chondroitin polymerase from escherichia coli strain k4 (k4cp) complexed with udp-glcua and udp 0.7725 2 210
6e4r-assembly1.cif.gz_A crystal structure of the drosophila melanogaster polypeptide n-acetylgalactosaminyl transferase pgant9b 0.7628 2 234
6p61-assembly2.cif.gz_B structure of a glycosyltransferase from leptospira borgpetersenii serovar hardjo-bovis (strain jb197) 0.7624 1 209
ID Description Score Start End Superfamily
af_Q874R3_599_681_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8664 240 261 1.10.10.10
af_Q4CTU5_2_170_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8461 156 207 3.90.550.10
af_Q8IA44_30_426_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.7987 2 209 3.90.550.10
af_A0A0P0WFB4_78_162_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7855 240 261 1.10.10.10
af_Q57738_133_209_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7815 240 264 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A520HGU9-F1-model_v4 Glycosyltransferase 0.999 2 210 GO:0016740
AF-A0A520HGU9-F1-model_v4 Glycosyltransferase 0.9802 2 210 GO:0016740
AF-A0A401J649-F1-model_v4 Glycosyltransferase 2-like domain-containing protein 0.9794 1 181 GO:0016757
AF-A0A5C8SKL6-F1-model_v4 Glycosyltransferase 0.9754 2 275 GO:0016740
AF-J0ZKX4-F1-model_v4 Glycosyltransferase 2-like prokaryotic type domain-containing protein 0.9754 2 266 GO:0016740

Feature Viewer

pLDDT pTM Quality
91.72 0.88 High
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Predicted Structure (AlphaFold2)

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