F210408

General Info

Members Datasets Scaffolds Average Seq Length
151 84 236 434

Family's Representative Sequence

Representative Sequence 3300003781|Ga0055536_1000003|Ga0055536_100000365
Length 482
Sequence LHVSAAKFAWINFSLHRPVCFQFILADRHKTFFKNACLNANSSYPGDLTTFITLRLEKIIDKTTAGKLSHRILLIFALAILLAAEGFFGYSLHQLSERQEQIKHDYSRVNNITYGLFSVQQWKDKVAAIVHHQVSGLKITRKQKKVLQGEVEQVLLALIDKAEALVNKPKKTISGKIQKFAIKNFVNSDSIRAQVPSFARKIIAEIDNPKNKKQLGRMALGEFNEIAKEESQDTAFVANNAIMKKIYNSYGVSSNAQLNQKLSSSLINIRKQTYAYCFGMLSCVTDLHATLFIMSLLFAFILLGVGLTASMIEVDARIRSLDFVLLGEHVVFNDQVLFFQSKSIMDVVRVLISQSAIDSVLVGVLILAFSILFPVVKLTSTGVHLLGGKRWAENRIIRYFAFQSGKWSMADVIVIAILMAYIGLNGLLENQLRALNINNDSLTILTTNNTALQPGYIIFICFVLYGLILSTILKSITPHDVH

Samples

Sample ID Description Type Environment
1 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
8 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
9 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
10 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
11 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
17 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
18 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
19 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
20 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
21 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
22 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
23 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
24 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
25 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
26 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
27 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
28 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
29 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
30 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
31 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
32 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
33 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
34 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
35 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
36 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
43 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
44 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
45 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
46 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
47 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
48 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
49 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
50 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
51 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
52 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
53 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
54 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
55 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
56 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
57 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
58 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
59 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
60 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
61 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
62 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
63 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
64 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
65 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
66 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
67 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
68 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
69 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
70 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
71 2738541283 Pedobacter sp. OK701 Isolate Unclassified
72 2738541302 Pedobacter sp. CF074 Isolate Unclassified
73 2738543023 Pedobacter sp. OK628 Isolate Unclassified
74 2739367656 Pedobacter sp. CF523 Isolate Unclassified
75 2739367663 Pedobacter sp. YR510 Isolate Unclassified
76 2818991437 Pedobacter terrae 518 Isolate Unclassified
77 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
78 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
79 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
80 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
81 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
82 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
83 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
84 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 88.08
Metatranscriptomes 0
Isolates 11.92

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.28
Nodule 0
Rhizoplane 0
Rhizosphere 82.12
Stem 0
Stem Tuber 0
Unclassified 1.99

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055536_1000003 3300003781 Bacteria 447744
2 SwRhRL2b_contig_952651 2162886007 Bacteria 31811
3 JGI25162J39368_1000011 3300002737 Bacteria 379156
4 rootH2_10134995 3300003320 Bacteria 4446
5 rootL2_10325966 3300003322 Bacteria 4701
6 rootH1_10024365 3300003323 Bacteria 14638
7 rootH1_10176252 3300003323 Bacteria 3223
8 Ga0055530_10000862 3300003791 Bacteria 25003
9 Ga0065714_10003118 3300005288 Bacteria 23769
10 Ga0065714_10064470 3300005288 Bacteria 61758
11 Ga0065714_10068508 3300005288 Bacteria 4691
12 Ga0065714_10073902 3300005288 Bacteria 3114
13 Ga0065704_10000237 3300005289 Bacteria 90089
14 Ga0070658_10137599 3300005327 Bacteria 2039
15 Ga0070680_100152468 3300005336 Bacteria 1940
16 Ga0070681_10010928 3300005458 Bacteria 8978
17 Ga0070679_100071660 3300005530 Bacteria 3456
18 Ga0068855_100016000 3300005563 Bacteria 9023
19 Ga0068856_100000112 3300005614 Bacteria 80466
20 Ga0068870_10103202 3300005840 Bacteria 1615
21 Ga0075434_100161014 3300006871 Bacteria 2264
22 Ga0105244_10085527 3300009036 Bacteria 1556
23 Ga0105240_10022597 3300009093 Bacteria 8333
24 Ga0105240_10115667 3300009093 Bacteria 3237
25 Ga0105240_10434029 3300009093 Bacteria 1473
26 Ga0105237_10000950 3300009545 Bacteria 38941
27 Ga0105239_10000270 3300010375 Bacteria 76875
28 Ga0105239_10000691 3300010375 Bacteria 48085
29 Ga0157373_10000021 3300013100 Bacteria 165522
30 Ga0157373_10002360 3300013100 Bacteria 14327
31 Ga0157373_10020940 3300013100 Bacteria 4748
32 Ga0157373_10053696 3300013100 Bacteria 2865
33 Ga0157371_10000074 3300013102 Bacteria 162988
34 Ga0157371_10007023 3300013102 Bacteria 9160
35 Ga0157370_10001597 3300013104 Bacteria 28015
36 Ga0157370_10035134 3300013104 Bacteria 4874
37 Ga0157369_10001883 3300013105 Bacteria 25308
38 Ga0157378_10248443 3300013297 Bacteria 1702
39 Ga0163162_10000108 3300013306 Bacteria 74606
40 Ga0163162_10000238 3300013306 Bacteria 50235
41 Ga0163162_10024640 3300013306 Bacteria 5942
42 Ga0163162_10452288 3300013306 Bacteria 1416
43 Ga0157375_10010181 3300013308 Bacteria 8277
44 Ga0182008_10000001 3300014497 Bacteria 540790
45 Ga0182008_10000537 3300014497 Bacteria 28254
46 Ga0157379_10100433 3300014968 Bacteria 2597
47 Ga0182006_1000149 3300015261 Bacteria 74752
48 Ga0182006_1000497 3300015261 Bacteria 30519
49 Ga0182006_1003974 3300015261 Bacteria 7397
50 Ga0182007_10000033 3300015262 Bacteria 139808
51 Ga0183373_1001 3300015682 Bacteria 1410374
52 Ga0163161_10000147 3300017792 Bacteria 64299
53 Ga0163161_10000572 3300017792 Bacteria 29561
54 Ga0163161_10002476 3300017792 Bacteria 13167
55 Ga0209437_100017 3300025233 Bacteria 694471
56 Ga0209676_1000001 3300025292 Bacteria 1852142
57 Ga0209050_1000016 3300025298 Bacteria 729149
58 Ga0209050_1014408 3300025298 Unclassified 3407
59 Ga0207695_10067391 3300025913 Bacteria 3672
60 Ga0207695_10089773 3300025913 Bacteria 3089
61 Ga0207695_10194592 3300025913 Bacteria 1944
62 Ga0207671_10004416 3300025914 Bacteria 13472
63 Ga0207667_10017263 3300025949 Bacteria 8129
64 Ga0207702_10000278 3300026078 Bacteria 58953
65 Ga0316177_1005282 3300030731 Bacteria 10014
66 Ga0316176_1040115 3300030732 Bacteria 64357
67 Ga0316183_1074350 3300030742 Bacteria 48608
68 Ga0307405_10000003 3300031731 Bacteria 569064
69 Ga0307412_10000004 3300031911 Bacteria 544053
70 Ga0307414_10000192 3300032004 Bacteria 41192
71 Ga0307414_10008011 3300032004 Bacteria 5973
72 Ga0307414_10012314 3300032004 Bacteria 5052
73 Ga0307414_10115656 3300032004 Bacteria 2052
74 Ga0495650_0000036 3300046471 Bacteria 400633
75 Ga0495606_0000426 3300046507 Bacteria 70066
76 Ga0495606_0011144 3300046507 Bacteria 7366
77 Ga0495606_0019293 3300046507 Bacteria 5079
78 Ga0495606_0035078 3300046507 Bacteria 3434
79 Ga0495610_0000051 3300046512 Bacteria 143715
80 Ga0495610_0000574 3300046512 Bacteria 36619
81 Ga0495616_0013759 3300046513 Bacteria 4554
82 Ga0495625_0000003 3300046660 Bacteria 686847
83 Ga0495661_0002495 3300046665 Bacteria 14155
84 Ga0495649_0000002 3300046694 Bacteria 1093458
85 Ga0495660_0057324 3300046810 Bacteria 2101
86 Ga0495686_0057479 3300047472 Bacteria 2428
87 Ga0501031_0039502 3300049568 Bacteria 3079
88 Ga0501032_0000667 3300049569 Bacteria 27891
89 Ga0501033_0000036 3300049570 Bacteria 148612
90 Ga0501034_0000633 3300049571 Bacteria 54605
91 Ga0501036_0046409 3300049572 Unclassified 3679
92 Ga0501038_0145128 3300049574 Unclassified 1938
93 Ga0501039_0007626 3300049575 Bacteria 8263
94 Ga0501043_0006636 3300049579 Bacteria 9260
95 Ga0501241_002433 3300049758 Bacteria 3600
96 Ga0501035_0047244 3300049822 Bacteria 3865
97 Ga0501045_0000431 3300049824 Bacteria 25646
98 nmdc:mga0n895_162578_c1 3300050512 Bacteria 2264
99 Ga0500616_0044401 3300053153 Bacteria 2371
100 Ga0500622_0003036 3300053156 Bacteria 11594
101 2738754696 2738541283 Bacteria 7222293
102 2738754697 2738541283 Bacteria 7222293
103 2738855384 2738541302 Bacteria 5944758
104 2739300832 2738543023 Bacteria 6767879
105 2739300833 2738543023 Bacteria 6767879
106 2739615306 2739367656 Bacteria 5152243
107 2739646006 2739367663 Bacteria 5040914
108 2819546079 2818991437 Bacteria 5805520
109 2842725372 2842722452 Bacteria 6263924
110 2842903844 2842903701 Bacteria 6986368
111 2842912649 2842909656 Bacteria 6185908
112 2857628587 2857627736 Bacteria 5625397
113 2902048775 2902048731 Bacteria 4976191
114 2902048776 2902048731 Bacteria 4976191
115 2904446378 2904445276 Bacteria 5310396
116 2946002292 2945997725 Bacteria 6404843
117 2954019191 2954016120 Bacteria 6446024
118 2954019192 2954016120 Bacteria 6446024
119 Ga0055536_1000003
120 SwRhRL2b_contig_952651
121 JGI25162J39368_1000011
122 rootH2_10134995
123 rootL2_10325966
124 rootH1_10024365
125 rootH1_10176252
126 Ga0055530_10000862
127 Ga0065714_10003118
128 Ga0065714_10064470
129 Ga0065714_10068508
130 Ga0065714_10073902
131 Ga0065704_10000237
132 Ga0070658_10137599
133 Ga0070680_100152468
134 Ga0070681_10010928
135 Ga0070679_100071660
136 Ga0068855_100016000
137 Ga0068856_100000112
138 Ga0068870_10103202
139 Ga0075434_100161014
140 Ga0105244_10085527
141 Ga0105240_10022597
142 Ga0105240_10115667
143 Ga0105240_10434029
144 Ga0105237_10000950
145 Ga0105239_10000270
146 Ga0105239_10000691
147 Ga0157373_10000021
148 Ga0157373_10002360
149 Ga0157373_10020940
150 Ga0157373_10053696
151 Ga0157371_10000074
152 Ga0157371_10007023
153 Ga0157370_10001597
154 Ga0157370_10035134
155 Ga0157369_10001883
156 Ga0157378_10248443
157 Ga0163162_10000108
158 Ga0163162_10000238
159 Ga0163162_10024640
160 Ga0163162_10452288
161 Ga0157375_10010181
162 Ga0182008_10000001
163 Ga0182008_10000537
164 Ga0157379_10100433
165 Ga0182006_1000149
166 Ga0182006_1000497
167 Ga0182006_1003974
168 Ga0182007_10000033
169 Ga0183373_1001
170 Ga0163161_10000147
171 Ga0163161_10000572
172 Ga0163161_10002476
173 Ga0209437_100017
174 Ga0209676_1000001
175 Ga0209050_1000016
176 Ga0209050_1014408
177 Ga0207695_10067391
178 Ga0207695_10089773
179 Ga0207695_10194592
180 Ga0207671_10004416
181 Ga0207667_10017263
182 Ga0207702_10000278
183 Ga0316177_1005282
184 Ga0316176_1040115
185 Ga0316183_1074350
186 Ga0307405_10000003
187 Ga0307412_10000004
188 Ga0307414_10000192
189 Ga0307414_10008011
190 Ga0307414_10012314
191 Ga0307414_10115656
192 Ga0495650_0000036
193 Ga0495606_0000426
194 Ga0495606_0011144
195 Ga0495606_0019293
196 Ga0495606_0035078
197 Ga0495610_0000051
198 Ga0495610_0000574
199 Ga0495616_0013759
200 Ga0495625_0000003
201 Ga0495661_0002495
202 Ga0495649_0000002
203 Ga0495660_0057324
204 Ga0495686_0057479
205 Ga0501031_0039502
206 Ga0501032_0000667
207 Ga0501033_0000036
208 Ga0501034_0000633
209 Ga0501036_0046409
210 Ga0501038_0145128
211 Ga0501039_0007626
212 Ga0501043_0006636
213 Ga0501241_002433
214 Ga0501035_0047244
215 Ga0501045_0000431
216 nmdc:mga0n895_162578_c1
217 Ga0500616_0044401
218 Ga0500622_0003036
219 2738754696
220 2738754697
221 2738855384
222 2739300832
223 2739300833
224 2739615306
225 2739646006
226 2819546079
227 2842725372
228 2842903844
229 2842912649
230 2857628587
231 2902048775
232 2902048776
233 2904446378
234 2946002292
235 2954019191
236 2954019192

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04403

PqiA

Paraquat-inducible protein A

335

480

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
4j2q-assembly1.cif.gz_A crystal structure of c-terminally truncated arrestin reveals mechanism of arrestin activation 0.5196 255 288
7ocf-assembly1.cif.gz_J active state glua1/a2 ampa receptor in complex with tarp gamma 8 and cnih2 (lbd-tmd) 0.4555 232 429
8p3u-assembly1.cif.gz_F homomeric glua1 in tandem with tarp gamma-3, desensitized conformation 2 0.4534 231 421
8ss5-assembly1.cif.gz_A structure of lbd-tmd of ampa receptor glua2 in complex with auxiliary subunit tarp gamma-5 (apo state) 0.4533 184 429
7ocd-assembly1.cif.gz_J resting state glua1/a2 heterotetramer in complex with auxiliary subunit tarp gamma 8 (lbd-tmd) 0.4501 233 429
ID Description Score Start End Superfamily
af_P0AD03_66_218_1.20.120.550 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Membrane associated eicosanoid/glutathione metabolism-like domain 0.7331 237 420 1.20.120.550
af_P0AD03_66_218_1.20.120.550 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Membrane associated eicosanoid/glutathione metabolism-like domain 0.7064 237 420 1.20.120.550
af_P0AFL9_48_201_1.20.120.550 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Membrane associated eicosanoid/glutathione metabolism-like domain 0.6554 237 421 1.20.120.550
af_P0AFL9_48_201_1.20.120.550 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Membrane associated eicosanoid/glutathione metabolism-like domain 0.6256 237 421 1.20.120.550
af_D3YXJ9_3_194_1.20.140.150 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3; 0.5282 230 429 1.20.140.150
ID Description Score Start End GO Terms
AF-A0A6I4I2I1-F1-model_v4 Paraquat-inducible protein A 0.9642 2 424 GO:0016020
AF-A0A519Y088-F1-model_v4 2-methylisocitrate lyase 0.9414 208 423 GO:0016020
GO:0016829
AF-A0A6I4I2I1-F1-model_v4 Paraquat-inducible protein A 0.9403 2 424 GO:0016020
AF-A0A519W1C9-F1-model_v4 PepSY domain-containing protein 0.9251 4 310 GO:0016020
AF-A0A519XRP4-F1-model_v4 2-methylisocitrate lyase 0.9152 50 426 GO:0016020
GO:0016829

Map