F212627

General Info

Members Datasets Scaffolds Average Seq Length
151 112 149 310

Family's Representative Sequence

Representative Sequence 3300048913|Ga0496110_0006050|Ga0496110_0006050_2119_3195
Length 358
Sequence MQGLRAALRLLNRKQHIESNIEHKSSKHGKRGIEMSATRPRVLVTREIPEAGLRILRQSCDVTVFSSERQPSREELSNLLPDTDALLSMLTDTLDRELLTQAPQLRVISNYAVGYNNIDIQAANDLGISVTNTPGAMTEATADIAWALLMAVTRRIVEADAYVRAGKWTGWAPSLLLGMEYGGKTLGIVGAGRIGLAIAKRARAFDMNVIYYNRRRLDEATEQQYGLTYADLDTLVSTSDILSLSLPYSAESHHLFNADLLARLKPTAYLINTARGPIVDEAALVEALQQGRLAGAGLDVFEKEPEVHPGLLELSNVVLAPHLGSSTVETRDRMAVLAAENIVRVLAGKPPHSLVTKK

Samples

Sample ID Description Type Environment
1 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
2 2643221560 Sphingopyxis sp. Root1497 Isolate Unclassified
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
7 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
13 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
14 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
15 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
19 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
20 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
21 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
22 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
23 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
24 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
25 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
26 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
29 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
31 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
32 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
33 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
34 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
35 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
50 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
51 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
52 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
53 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
54 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
55 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
56 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
57 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
58 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
59 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
60 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
61 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
62 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
63 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
64 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
65 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
66 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
67 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
68 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
69 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
70 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
71 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
72 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
73 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
74 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
75 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
76 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
77 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
78 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
79 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
80 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
81 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
82 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
83 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
84 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
85 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
86 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
87 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
88 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
89 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
90 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
91 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
96 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
97 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
98 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
99 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
100 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
102 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
103 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
104 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
105 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
106 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
107 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
108 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
109 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
110 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
111 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
112 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.68
Metatranscriptomes 0
Isolates 1.32

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 16.56
Rhizosphere 78.81
Stem 0
Stem Tuber 0
Unclassified 4.64

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100008497 3300005329 Bacteria 8722
2 Ga0068869_100188909 3300005334 Bacteria 1619
3 Ga0070680_100011675 3300005336 Bacteria 6807
4 Ga0070710_10281038 3300005437 Bacteria 1080
5 Ga0070663_100247843 3300005455 Bacteria 1409
6 Ga0070681_10006745 3300005458 Bacteria 11176
7 Ga0070706_100440396 3300005467 Unclassified 1213
8 Ga0070698_100002131 3300005471 Bacteria 21976
9 Ga0070698_100039043 3300005471 Bacteria 4889
10 Ga0070679_100013131 3300005530 Bacteria 7929
11 Ga0070684_100013337 3300005535 Bacteria 6623
12 Ga0070704_100135808 3300005549 Bacteria 1913
13 Ga0070664_100076849 3300005564 Bacteria 2870
14 Ga0068854_100124482 3300005578 Bacteria 1961
15 Ga0068856_100134266 3300005614 Bacteria 2480
16 Ga0081455_10026187 3300005937 Bacteria 5371
17 Ga0081539_10005114 3300005985 Bacteria 13722
18 Ga0070712_100053796 3300006175 Bacteria 2812
19 Ga0075427_10005194 3300006194 Bacteria 1849
20 Ga0075431_100043622 3300006847 Bacteria 4625
21 Ga0075433_10067704 3300006852 Bacteria 3134
22 Ga0075434_100014472 3300006871 Bacteria 7540
23 Ga0075434_100056335 3300006871 Bacteria 3906
24 Ga0075429_100055336 3300006880 Bacteria 3452
25 Ga0068865_100045556 3300006881 Bacteria 3007
26 Ga0075435_100053045 3300007076 Bacteria 3268
27 Ga0111539_10233207 3300009094 Bacteria 2143
28 Ga0111539_10254069 3300009094 Bacteria 2047
29 Ga0105245_10019665 3300009098 Bacteria 5917
30 Ga0114129_10018658 3300009147 Bacteria 9876
31 Ga0105239_10203454 3300010375 Bacteria 2218
32 Ga0157374_10406897 3300013296 Bacteria 1358
33 Ga0157375_10518990 3300013308 Bacteria 1355
34 Ga0157377_10038915 3300014745 Bacteria 2628
35 Ga0213876_10001170 3300021384 Bacteria 16575
36 Ga0213876_10065922 3300021384 Bacteria 1911
37 Ga0207692_10225390 3300025898 Bacteria 1113
38 Ga0207684_10063613 3300025910 Bacteria 3132
39 Ga0207707_10006426 3300025912 Bacteria 10267
40 Ga0207693_10063470 3300025915 Bacteria 2893
41 Ga0207660_10061485 3300025917 Bacteria 2703
42 Ga0207649_10218724 3300025920 Bacteria 1355
43 Ga0207652_10025019 3300025921 Bacteria 4959
44 Ga0207646_10022988 3300025922 Bacteria 5732
45 Ga0207687_10083899 3300025927 Bacteria 2308
46 Ga0207679_10061235 3300025945 Bacteria 2801
47 Ga0207640_10033000 3300025981 Bacteria 3216
48 Ga0207678_10186206 3300026067 Bacteria 1773
49 Ga0207702_10255657 3300026078 Bacteria 1647
50 Ga0207683_10012927 3300026121 Bacteria 7128
51 Ga0207683_10311953 3300026121 Bacteria 1440
52 Ga0316575_10064723 3300031665 Bacteria 1464
53 Ga0316579_10107959 3300031691 Bacteria 1335
54 Ga0316576_10016015 3300031727 Bacteria 5052
55 Ga0316577_10003665 3300031733 Bacteria 7808
56 Ga0307416_100023576 3300032002 Bacteria 4469
57 Ga0307416_100452369 3300032002 Bacteria 1337
58 Ga0307415_100035127 3300032126 Bacteria 3272
59 Ga0316574_0159906 3300035398 Bacteria 1451
60 Ga0373931_0018407 3300035691 Unclassified 3475
61 Ga0373931_0043543 3300035691 Bacteria 2365
62 Ga0316584_0016452 3300036712 Bacteria 5302
63 Ga0395900_0266877 3300037418 Bacteria 1707
64 Ga0395905_0034753 3300037471 Bacteria 4734
65 Ga0395905_0519991 3300037471 Bacteria 1091
66 Ga0395901_0029880 3300038443 Bacteria 5613
67 Ga0400489_32282 3300039093 Bacteria 123730
68 Ga0436365_0426422 3300039437 Bacteria 1911
69 Ga0436365_0447759 3300039437 Bacteria 16724
70 Ga0436365_1344026 3300039437 Bacteria 7627
71 Ga0439448_0010158 3300042005 Bacteria 2785
72 Ga0451577_0000008 3300042876 Bacteria 692992
73 Ga0451577_0006506 3300042876 Bacteria 11633
74 Ga0451577_0008676 3300042876 Bacteria 9870
75 Ga0453684_0000032 3300044712 Bacteria 745626
76 Ga0453684_0001221 3300044712 Bacteria 78865
77 Ga0453684_0027043 3300044712 Bacteria 8249
78 Ga0453684_0039681 3300044712 Bacteria 6409
79 Ga0453684_0265322 3300044712 Bacteria 1965
80 Ga0451576_0058354 3300045051 Bacteria 4034
81 Ga0495653_0045222 3300046463 Bacteria 3414
82 Ga0495653_0124213 3300046463 Bacteria 1835
83 Ga0495608_0107902 3300046511 Bacteria 1791
84 Ga0495618_0099373 3300046514 Bacteria 1862
85 Ga0495630_0142223 3300046517 Bacteria 1825
86 Ga0495652_0085202 3300046529 Bacteria 2597
87 Ga0495587_0296512 3300046536 Bacteria 905
88 Ga0495645_0126396 3300046543 Bacteria 1796
89 Ga0495625_0000390 3300046660 Bacteria 66951
90 Ga0495599_0115830 3300046678 Bacteria 1667
91 Ga0495600_0094663 3300046809 Bacteria 1948
92 Ga0495674_0037459 3300047319 Bacteria 4358
93 Ga0495684_0094238 3300047471 Bacteria 2267
94 Ga0496100_0013453 3300048903 Bacteria 4720
95 Ga0496101_0320181 3300048904 Bacteria 1217
96 Ga0496102_0004878 3300048905 Bacteria 11355
97 Ga0496103_0004524 3300048906 Bacteria 8424
98 Ga0496104_0000750 3300048907 Bacteria 27736
99 Ga0496104_0009043 3300048907 Bacteria 8859
100 Ga0496104_0115179 3300048907 Bacteria 2579
101 Ga0496105_0000125 3300048908 Bacteria 51796
102 Ga0496105_0005145 3300048908 Bacteria 9919
103 Ga0496105_0151244 3300048908 Bacteria 1908
104 Ga0496105_0162159 3300048908 Bacteria 1835
105 Ga0496106_0115037 3300048909 Bacteria 2098
106 Ga0496109_0001636 3300048912 Bacteria 18718
107 Ga0496109_0213700 3300048912 Bacteria 1814
108 Ga0496110_0000772 3300048913 Bacteria 22233
109 Ga0496110_0006050 3300048913 Bacteria 9538
110 Ga0496110_0406858 3300048913 Bacteria 1241
111 Ga0496110_0420820 3300048913 Bacteria 1218
112 Ga0496111_0000589 3300048914 Bacteria 19074
113 Ga0496111_0057167 3300048914 Bacteria 2824
114 Ga0496111_0060979 3300048914 Bacteria 2734
115 Ga0496111_0283463 3300048914 Bacteria 1229
116 Ga0496114_0002336 3300048917 Bacteria 14433
117 Ga0496114_0064204 3300048917 Bacteria 3074
118 Ga0496115_0033859 3300048918 Bacteria 4036
119 Ga0501032_0173444 3300049569 Bacteria 1413
120 Ga0501034_0026241 3300049571 Bacteria 5933
121 Ga0501042_0299796 3300049578 Bacteria 1161
122 Ga0501042_0338932 3300049578 Bacteria 1087
123 Ga0501048_0240365 3300049582 Bacteria 1285
124 Ga0501067_0064037 3300049583 Bacteria 2036
125 Ga0501071_0160550 3300049587 Bacteria 1680
126 Ga0501072_0070670 3300049588 Bacteria 2757
127 Ga0501076_0010320 3300049592 Bacteria 6925
128 Ga0501076_0282955 3300049592 Bacteria 1359
129 Ga0501077_0164328 3300049593 Unclassified 1410
130 Ga0501035_0142318 3300049822 Bacteria 2085
131 Ga0501045_0053044 3300049824 Bacteria 2962
132 nmdc:mga05p37_223124_c1 3300050507 Bacteria 2274
133 nmdc:mga05p37_2570_c1 3300050507 Bacteria 21096
134 nmdc:mga05p37_40936_c1 3300050507 Bacteria 5690
135 nmdc:mga09592_210610_c1 3300050508 Bacteria 1684
136 nmdc:mga09592_316109_c1 3300050508 Unclassified 1353
137 nmdc:mga06r32_102306_c1 3300050510 Bacteria 2812
138 nmdc:mga06r32_77462_c1 3300050510 Bacteria 3230
139 nmdc:mga08y16_675278_c1 3300050511 Bacteria 1035
140 nmdc:mga0n895_88455_c1 3300050512 Bacteria 3097
141 nmdc:mga0n895_91236_c1 3300050512 Bacteria 3049
142 nmdc:mga08x19_135732_c1 3300050514 Bacteria 1658
143 nmdc:mga0a205_235738_c1 3300050515 Bacteria 1712
144 nmdc:mga0a205_59070_c1 3300050515 Bacteria 3705
145 Ga0495595_0022878 3300053084 Bacteria 2747
146 Ga0495619_0118724 3300053085 Bacteria 1812
147 Ga0501084_0150734 3300054114 Bacteria 1960
148 Ga0501084_0295759 3300054114 Bacteria 1367
149 Ga0501082_0096415 3300060353 Bacteria 2557

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300050507 nmdc:mga05p37_223124_c1 nmdc:mga05p37_223124_c1_1423_2250 247
2 3300054114 Ga0501084_0150734 Ga0501084_0150734_760_1626 258
3 3300048913 Ga0496110_0420820 Ga0496110_0420820_13_792 259
4 3300048914 Ga0496111_0283463 Ga0496111_0283463_424_1203 259
5 3300046536 Ga0495587_0296512 Ga0495587_0296512_23_823 260
6 3300049592 Ga0501076_0010320 Ga0501076_0010320_76_930 266
7 3300009147 Ga0114129_10018658 Ga0114129_100186588 271
8 3300050507 nmdc:mga05p37_2570_c1 nmdc:mga05p37_2570_c1_4489_5391 271
9 3300050508 nmdc:mga09592_316109_c1 nmdc:mga09592_316109_c1_404_1306 271
10 3300050512 nmdc:mga0n895_91236_c1 nmdc:mga0n895_91236_c1_109_1011 271
11 3300050514 nmdc:mga08x19_135732_c1 nmdc:mga08x19_135732_c1_10_912 271
12 3300050515 nmdc:mga0a205_59070_c1 nmdc:mga0a205_59070_c1_419_1321 271
13 3300049578 Ga0501042_0338932 Ga0501042_0338932_62_940 280
14 3300049587 Ga0501071_0160550 Ga0501071_0160550_720_1598 280
15 3300049592 Ga0501076_0282955 Ga0501076_0282955_194_1072 280
16 3300009094 Ga0111539_10254069 Ga0111539_102540692 281
17 3300045051 Ga0451576_0058354 Ga0451576_0058354_1777_2736 284
18 iso_pu_bacteria 2643221560 2643822907 286
19 3300037471 Ga0395905_0034753 Ga0395905_0034753_1247_2239 287
20 3300049578 Ga0501042_0299796 Ga0501042_0299796_124_1071 287
21 3300049582 Ga0501048_0240365 Ga0501048_0240365_46_993 287
22 3300049588 Ga0501072_0070670 Ga0501072_0070670_628_1575 287
23 3300049593 Ga0501077_0164328 Ga0501077_0164328_90_1046 287
24 3300049822 Ga0501035_0142318 Ga0501035_0142318_890_1837 287
25 3300049824 Ga0501045_0053044 Ga0501045_0053044_999_1946 287
26 3300050510 nmdc:mga06r32_102306_c1 nmdc:mga06r32_102306_c1_1496_2563 287
27 3300054114 Ga0501084_0295759 Ga0501084_0295759_326_1273 287
28 3300060353 Ga0501082_0096415 Ga0501082_0096415_1489_2436 287
29 3300048908 Ga0496105_0151244 Ga0496105_0151244_38_913 288
30 3300048912 Ga0496109_0213700 Ga0496109_0213700_476_1351 288
31 3300035691 Ga0373931_0043543 Ga0373931_0043543_795_1745 290
32 3300038443 Ga0395901_0029880 Ga0395901_0029880_3787_4710 290
33 3300032002 Ga0307416_100023576 Ga0307416_1000235763 291
34 3300035691 Ga0373931_0018407 Ga0373931_0018407_1586_2563 291
35 3300006847 Ga0075431_100043622 Ga0075431_1000436226 292
36 3300009094 Ga0111539_10233207 Ga0111539_102332073 292
37 3300032002 Ga0307416_100452369 Ga0307416_1004523691 292
38 3300048904 Ga0496101_0320181 Ga0496101_0320181_213_1169 292
39 3300048914 Ga0496111_0057167 Ga0496111_0057167_449_1405 292
40 3300049583 Ga0501067_0064037 Ga0501067_0064037_637_1590 292
41 3300050510 nmdc:mga06r32_77462_c1 nmdc:mga06r32_77462_c1_328_1284 292
42 3300050511 nmdc:mga08y16_675278_c1 nmdc:mga08y16_675278_c1_34_960 292
43 3300005471 Ga0070698_100002131 Ga0070698_1000021312 293
44 3300021384 Ga0213876_10001170 Ga0213876_1000117013 293
45 3300021384 Ga0213876_10065922 Ga0213876_100659222 293
46 3300025898 Ga0207692_10225390 Ga0207692_102253901 293
47 3300025910 Ga0207684_10063613 Ga0207684_100636132 293
48 3300025922 Ga0207646_10022988 Ga0207646_100229886 293
49 3300039437 Ga0436365_0426422 Ga0436365_0426422_229_1212 293
50 3300039437 Ga0436365_0447759 Ga0436365_0447759_2009_3016 293
51 3300039437 Ga0436365_1344026 Ga0436365_1344026_6139_7146 293
52 3300048913 Ga0496110_0006050 Ga0496110_0006050_2119_3195 293
53 iso_pu_bacteria 2585428059 2587739357 293
54 3300005985 Ga0081539_10005114 Ga0081539_100051143 294
55 3300006194 Ga0075427_10005194 Ga0075427_100051942 294
56 3300006852 Ga0075433_10067704 Ga0075433_100677042 294
57 3300006871 Ga0075434_100014472 Ga0075434_1000144723 294
58 3300006871 Ga0075434_100056335 Ga0075434_1000563354 294
59 3300006880 Ga0075429_100055336 Ga0075429_1000553362 294
60 3300007076 Ga0075435_100053045 Ga0075435_1000530454 294
61 3300026121 Ga0207683_10311953 Ga0207683_103119532 294
62 3300031665 Ga0316575_10064723 Ga0316575_100647232 294
63 3300031691 Ga0316579_10107959 Ga0316579_101079591 294
64 3300031727 Ga0316576_10016015 Ga0316576_100160154 294
65 3300031733 Ga0316577_10003665 Ga0316577_100036653 294
66 3300032126 Ga0307415_100035127 Ga0307415_1000351273 294
67 3300035398 Ga0316574_0159906 Ga0316574_0159906_374_1348 294
68 3300036712 Ga0316584_0016452 Ga0316584_0016452_3721_4707 294
69 3300042005 Ga0439448_0010158 Ga0439448_0010158_92_1066 294
70 3300042876 Ga0451577_0000008 Ga0451577_0000008_589671_590657 294
71 3300042876 Ga0451577_0006506 Ga0451577_0006506_1318_2307 294
72 3300042876 Ga0451577_0008676 Ga0451577_0008676_6156_7142 294
73 3300044712 Ga0453684_0000032 Ga0453684_0000032_638825_639811 294
74 3300044712 Ga0453684_0001221 Ga0453684_0001221_60893_61882 294
75 3300044712 Ga0453684_0027043 Ga0453684_0027043_3628_4617 294
76 3300044712 Ga0453684_0039681 Ga0453684_0039681_583_1569 294
77 3300044712 Ga0453684_0265322 Ga0453684_0265322_919_1908 294
78 3300046660 Ga0495625_0000390 Ga0495625_0000390_19303_20406 294
79 3300048907 Ga0496104_0115179 Ga0496104_0115179_1063_1995 294
80 3300048909 Ga0496106_0115037 Ga0496106_0115037_492_1487 294
81 3300049569 Ga0501032_0173444 Ga0501032_0173444_60_1112 294
82 3300049571 Ga0501034_0026241 Ga0501034_0026241_2089_3078 294
83 3300050507 nmdc:mga05p37_40936_c1 nmdc:mga05p37_40936_c1_1224_2243 294
84 3300050508 nmdc:mga09592_210610_c1 nmdc:mga09592_210610_c1_101_1090 294
85 3300050512 nmdc:mga0n895_88455_c1 nmdc:mga0n895_88455_c1_1203_2219 294
86 3300050515 nmdc:mga0a205_235738_c1 nmdc:mga0a205_235738_c1_548_1567 294
87 3300005329 Ga0070683_100008497 Ga0070683_1000084975 295
88 3300005334 Ga0068869_100188909 Ga0068869_1001889092 295
89 3300005336 Ga0070680_100011675 Ga0070680_1000116752 295
90 3300005437 Ga0070710_10281038 Ga0070710_102810381 295
91 3300005455 Ga0070663_100247843 Ga0070663_1002478432 295
92 3300005458 Ga0070681_10006745 Ga0070681_100067455 295
93 3300005467 Ga0070706_100440396 Ga0070706_1004403961 295
94 3300005471 Ga0070698_100039043 Ga0070698_1000390433 295
95 3300005530 Ga0070679_100013131 Ga0070679_1000131312 295
96 3300005535 Ga0070684_100013337 Ga0070684_1000133373 295
97 3300005549 Ga0070704_100135808 Ga0070704_1001358082 295
98 3300005564 Ga0070664_100076849 Ga0070664_1000768492 295
99 3300005578 Ga0068854_100124482 Ga0068854_1001244822 295
100 3300005614 Ga0068856_100134266 Ga0068856_1001342662 295
101 3300005937 Ga0081455_10026187 Ga0081455_100261873 295
102 3300006175 Ga0070712_100053796 Ga0070712_1000537962 295
103 3300006881 Ga0068865_100045556 Ga0068865_1000455563 295
104 3300009098 Ga0105245_10019665 Ga0105245_100196653 295
105 3300010375 Ga0105239_10203454 Ga0105239_102034543 295
106 3300013296 Ga0157374_10406897 Ga0157374_104068972 295
107 3300013308 Ga0157375_10518990 Ga0157375_105189901 295
108 3300014745 Ga0157377_10038915 Ga0157377_100389152 295
109 3300025912 Ga0207707_10006426 Ga0207707_100064264 295
110 3300025915 Ga0207693_10063470 Ga0207693_100634703 295
111 3300025917 Ga0207660_10061485 Ga0207660_100614852 295
112 3300025920 Ga0207649_10218724 Ga0207649_102187242 295
113 3300025921 Ga0207652_10025019 Ga0207652_100250192 295
114 3300025927 Ga0207687_10083899 Ga0207687_100838992 295
115 3300025945 Ga0207679_10061235 Ga0207679_100612352 295
116 3300025981 Ga0207640_10033000 Ga0207640_100330003 295
117 3300026067 Ga0207678_10186206 Ga0207678_101862062 295
118 3300026078 Ga0207702_10255657 Ga0207702_102556572 295
119 3300026121 Ga0207683_10012927 Ga0207683_100129276 295
120 3300037418 Ga0395900_0266877 Ga0395900_0266877_456_1373 295
121 3300037471 Ga0395905_0519991 Ga0395905_0519991_116_1033 295
122 3300039093 Ga0400489_32282 Ga0400489_32282_9082_10062 295
123 3300046463 Ga0495653_0045222 Ga0495653_0045222_406_1338 295
124 3300046463 Ga0495653_0124213 Ga0495653_0124213_817_1779 295
125 3300046511 Ga0495608_0107902 Ga0495608_0107902_792_1754 295
126 3300046514 Ga0495618_0099373 Ga0495618_0099373_189_1091 295
127 3300046517 Ga0495630_0142223 Ga0495630_0142223_125_1120 295
128 3300046529 Ga0495652_0085202 Ga0495652_0085202_1387_2289 295
129 3300046543 Ga0495645_0126396 Ga0495645_0126396_838_1770 295
130 3300046678 Ga0495599_0115830 Ga0495599_0115830_667_1569 295
131 3300046809 Ga0495600_0094663 Ga0495600_0094663_603_1535 295
132 3300047319 Ga0495674_0037459 Ga0495674_0037459_1082_1984 295
133 3300047471 Ga0495684_0094238 Ga0495684_0094238_98_1030 295
134 3300048903 Ga0496100_0013453 Ga0496100_0013453_902_1789 295
135 3300048905 Ga0496102_0004878 Ga0496102_0004878_7414_8301 295
136 3300048906 Ga0496103_0004524 Ga0496103_0004524_918_1805 295
137 3300048907 Ga0496104_0000750 Ga0496104_0000750_12693_13580 295
138 3300048907 Ga0496104_0009043 Ga0496104_0009043_3222_4169 295
139 3300048908 Ga0496105_0000125 Ga0496105_0000125_24645_25532 295
140 3300048908 Ga0496105_0005145 Ga0496105_0005145_3883_4830 295
141 3300048908 Ga0496105_0162159 Ga0496105_0162159_869_1756 295
142 3300048912 Ga0496109_0001636 Ga0496109_0001636_9555_10442 295
143 3300048913 Ga0496110_0000772 Ga0496110_0000772_13726_14613 295
144 3300048913 Ga0496110_0406858 Ga0496110_0406858_28_915 295
145 3300048914 Ga0496111_0000589 Ga0496111_0000589_8527_9414 295
146 3300048914 Ga0496111_0060979 Ga0496111_0060979_895_1782 295
147 3300048917 Ga0496114_0002336 Ga0496114_0002336_12322_13209 295
148 3300048917 Ga0496114_0064204 Ga0496114_0064204_438_1325 295
149 3300048918 Ga0496115_0033859 Ga0496115_0033859_1158_2045 295
150 3300053084 Ga0495595_0022878 Ga0495595_0022878_917_1819 295
151 3300053085 Ga0495619_0118724 Ga0495619_0118724_343_1275 295

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00389

2-Hacid_dh

D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

42

356

0.99

PF02826

2-Hacid_dh_C

D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

146

324

0.99

PF03446

NAD_binding_2

NAD binding domain of 6-phosphogluconate dehydrogenase

185

299

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
2cuk-assembly2.cif.gz_D crystal structure of tt0316 protein from thermus thermophilus hb8 0.9508 6 295
1gdh-assembly1.cif.gz_B crystal structure of a nad-dependent d-glycerate dehydrogenase at 2.4 angstroms resolution 0.9459 2 295
4g2n-assembly1.cif.gz_A crystal structure of putative d-isomer specific 2-hydroxyacid dehydrogenase, nad-binding from polaromonas sp. js6 66 0.9409 2 295
1gdh-assembly1.cif.gz_B crystal structure of a nad-dependent d-glycerate dehydrogenase at 2.4 angstroms resolution 0.9397 2 295
2dbq-assembly1.cif.gz_A crystal structure of glyoxylate reductase (ph0597) from pyrococcus horikoshii ot3, complexed with nadp (i41) 0.9394 2 295
ID Description Score Start End Superfamily
af_Q8I725_27_126_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9862 2 86 3.40.50.720
af_Q9UBQ7_6_99_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9794 2 78 3.40.50.720
af_Q7SZY8_153_293_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9735 133 260 3.40.50.720
af_F1QYH7_30_136_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9703 6 75 3.40.50.720
af_Q9VII9_150_293_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9675 131 260 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A7V2PIU9-F1-model_v4 D-glycerate dehydrogenase 0.9799 2 106 GO:0005829
GO:0016618
GO:0030267
GO:0051287
AF-A0A7Y4UBS6-F1-model_v4 Phosphoglycerate dehydrogenase 0.9728 176 291 GO:0016614
GO:0051287
AF-A0A7K4NF71-F1-model_v4 3-phosphoglycerate dehydrogenase 0.9718 177 287 GO:0016491
GO:0051287
AF-A0A7V1LGD4-F1-model_v4 D-glycerate dehydrogenase 0.97 160 294 GO:0005829
GO:0016618
GO:0030267
GO:0051287
AF-A0A832T0D7-F1-model_v4 deleted 0.9692 183 285

Feature Viewer

pLDDT pTM Quality
95.75 0.89 High
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Predicted Structure (AlphaFold2)

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