F215524

General Info

Members Datasets Scaffolds Average Seq Length
152 102 304 292

Family's Representative Sequence

Representative Sequence 3300049823|Ga0501044_0424518|Ga0501044_0424518_446_1222
Length 258
Sequence VQVPEYRPAGKLQGKTALITGGDSGIGRAVAVAFAKEGADVAIVYLSEQKDADETVRLVEAEGKRCLAIAGDIGEEAFCKQCVERTVRELGKLDILVNNAGEQHPQDSITDITEQQLERTFRTNIFAMFFLTKAAMKHLKEGSAIINTASVTAYRGSSQLLDYSATKGAIVAFTRSLGQALAEKKIRVNAVAPGPIWTPLIPSTFPPEKVETFGGDVPMKRPGEPAEVAPSYVFLASSDSSYFTGQVLHPNGGEVING

Samples

Sample ID Description Type Environment
1 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
2 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
3 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
4 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
5 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
27 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300009978 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_199 metaG Metagenome Rhizosphere
30 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
31 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
32 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
35 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
36 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
38 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
66 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
67 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
68 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
69 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
70 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
71 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
72 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
73 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
74 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
75 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
76 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
77 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
78 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
79 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
80 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
81 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
82 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
83 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
84 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
85 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
86 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
91 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
92 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
93 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
94 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
95 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
96 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
97 2643221560 Sphingopyxis sp. Root1497 Isolate Unclassified
98 2643221563 Sphingopyxis sp. Root154 Isolate Unclassified
99 2643221608 Sphingopyxis sp. Root214 Isolate Unclassified
100 2852653556 Sphingopyxis sp. JAI108 Isolate Rhizosphere
101 2852680915 Sphingopyxis sp. JAI128 Isolate Rhizosphere
102 2895880812 Frankia sp. BMG5.11 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.39
Metatranscriptomes 0
Isolates 4.61

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.47
Nodule 0
Rhizoplane 0.66
Rhizosphere 80.26
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501044_0424518 3300049823 Bacteria 1239
2 JGI24751J29686_10000328 3300002459 Bacteria 17520
3 JGI24751J29686_10000339 3300002459 Bacteria 16903
4 Ga0055536_1000433 3300003781 Bacteria 29754
5 Ga0055536_1003719 3300003781 Bacteria 8088
6 Ga0055530_10001958 3300003791 Bacteria 14021
7 Ga0055531_10002073 3300003794 Bacteria 13789
8 Ga0055531_10010159 3300003794 Bacteria 4717
9 Ga0055531_10020194 3300003794 Bacteria 2649
10 Ga0070658_10039151 3300005327 Bacteria 3824
11 Ga0070658_10100812 3300005327 Bacteria 2387
12 Ga0068868_100000006 3300005338 Bacteria 123358
13 Ga0070660_100101174 3300005339 Bacteria 2284
14 Ga0070692_10277952 3300005345 Bacteria 1014
15 Ga0070669_100074410 3300005353 Bacteria 2518
16 Ga0070669_100156256 3300005353 Bacteria 1769
17 Ga0070675_100074714 3300005354 Bacteria 2816
18 Ga0070673_100048352 3300005364 Bacteria 3315
19 Ga0070673_100113247 3300005364 Bacteria 2253
20 Ga0070659_100045463 3300005366 Bacteria 3439
21 Ga0070659_100060530 3300005366 Bacteria 2991
22 Ga0070659_100305302 3300005366 Bacteria 1328
23 Ga0070667_100055100 3300005367 Bacteria 3358
24 Ga0070662_100001857 3300005457 Bacteria 12937
25 Ga0070679_100071959 3300005530 Bacteria 3449
26 Ga0068855_100043688 3300005563 Bacteria 5307
27 Ga0068855_100178815 3300005563 Bacteria 2399
28 Ga0070664_100543399 3300005564 Bacteria 1074
29 Ga0068854_100008574 3300005578 Bacteria 6579
30 Ga0068856_100426256 3300005614 Bacteria 1347
31 Ga0068852_100591045 3300005616 Bacteria 1114
32 Ga0068863_100017727 3300005841 Bacteria 6816
33 Ga0068858_100004749 3300005842 Bacteria 13302
34 Ga0068862_100039760 3300005844 Bacteria 3996
35 Ga0097621_100042893 3300006237 Bacteria 3645
36 Ga0075370_10079323 3300006353 Bacteria 1886
37 Ga0068871_100026178 3300006358 Bacteria 4549
38 Ga0105248_10102101 3300009177 Bacteria 3233
39 Ga0105148_100981 3300009978 Bacteria 2043
40 Ga0157373_10117183 3300013100 Bacteria 1872
41 Ga0157371_10127038 3300013102 Bacteria 1814
42 Ga0157370_10229687 3300013104 Bacteria 1718
43 Ga0157370_10258167 3300013104 Bacteria 1611
44 Ga0157369_10477247 3300013105 Bacteria 1291
45 Ga0157372_10039124 3300013307 Bacteria 5235
46 Ga0209675_1000037 3300025291 Bacteria 250958
47 Ga0209676_1000227 3300025292 Bacteria 123708
48 Ga0209676_1000296 3300025292 Bacteria 100635
49 Ga0209676_1005839 3300025292 Bacteria 6285
50 Ga0209025_1024339 3300025294 Bacteria 3128
51 Ga0209050_1000798 3300025298 Bacteria 44543
52 Ga0209257_1000250 3300025304 Bacteria 124024
53 Ga0209257_1006595 3300025304 Bacteria 7400
54 Ga0209257_1009978 3300025304 Bacteria 4930
55 Ga0207697_10017681 3300025315 Bacteria 2929
56 Ga0207680_10114560 3300025903 Bacteria 1754
57 Ga0207647_10214299 3300025904 Bacteria 1111
58 Ga0207705_10000143 3300025909 Bacteria 76756
59 Ga0207705_10007609 3300025909 Bacteria 7964
60 Ga0207705_10007610 3300025909 Bacteria 7964
61 Ga0207705_10007783 3300025909 Bacteria 7869
62 Ga0207705_10277167 3300025909 Bacteria 1283
63 Ga0207707_10198297 3300025912 Bacteria 1750
64 Ga0207657_10034267 3300025919 Bacteria 4568
65 Ga0207657_10081172 3300025919 Bacteria 2725
66 Ga0207652_10015547 3300025921 Bacteria 6190
67 Ga0207652_10503869 3300025921 Bacteria 1090
68 Ga0207681_10012959 3300025923 Bacteria 5153
69 Ga0207681_10207745 3300025923 Bacteria 1507
70 Ga0207644_10193823 3300025931 Bacteria 1599
71 Ga0207690_10018043 3300025932 Bacteria 4322
72 Ga0207690_10023306 3300025932 Bacteria 3862
73 Ga0207690_10064827 3300025932 Bacteria 2496
74 Ga0207690_10228939 3300025932 Bacteria 1426
75 Ga0207706_10001925 3300025933 Bacteria 20393
76 Ga0207670_10162154 3300025936 Bacteria 1670
77 Ga0207679_10108196 3300025945 Bacteria 2189
78 Ga0207679_10409852 3300025945 Bacteria 1194
79 Ga0207667_10031138 3300025949 Bacteria 5761
80 Ga0207667_10484035 3300025949 Bacteria 1256
81 Ga0207651_10051857 3300025960 Bacteria 2794
82 Ga0207658_10040794 3300025986 Bacteria 3358
83 Ga0207658_10599017 3300025986 Bacteria 990
84 Ga0207677_10000043 3300026023 Bacteria 110161
85 Ga0207703_10000619 3300026035 Bacteria 35882
86 Ga0207678_10039817 3300026067 Bacteria 4077
87 Ga0207702_10407942 3300026078 Bacteria 1311
88 Ga0207702_10492299 3300026078 Bacteria 1194
89 Ga0207641_10013540 3300026088 Bacteria 6691
90 Ga0207674_10621522 3300026116 Bacteria 1043
91 Ga0207698_10237462 3300026142 Bacteria 1659
92 Ga0207698_10561128 3300026142 Bacteria 1121
93 Ga0209983_1006349 3300027665 Bacteria 2430
94 Ga0268265_10018911 3300028380 Bacteria 4782
95 Ga0268265_10265714 3300028380 Bacteria 1528
96 Ga0307405_10446306 3300031731 Bacteria 1024
97 Ga0307410_10002972 3300031852 Bacteria 8363
98 Ga0307410_10159997 3300031852 Bacteria 1686
99 Ga0307407_10023813 3300031903 Bacteria 3200
100 Ga0307412_10004317 3300031911 Bacteria 7926
101 Ga0307412_10225280 3300031911 Bacteria 1440
102 Ga0307409_100029859 3300031995 Bacteria 3908
103 Ga0307416_100139102 3300032002 Bacteria 2203
104 Ga0307416_100509724 3300032002 Bacteria 1269
105 Ga0307414_10000095 3300032004 Bacteria 67330
106 Ga0307414_10096669 3300032004 Bacteria 2211
107 Ga0307414_10109112 3300032004 Bacteria 2101
108 Ga0307414_10189065 3300032004 Bacteria 1664
109 Ga0307411_10000251 3300032005 Bacteria 17662
110 Ga0307411_10083478 3300032005 Bacteria 2207
111 Ga0307510_10175600 3300033180 Bacteria 1714
112 Ga0395899_0015595 3300037312 Bacteria 5794
113 Ga0395899_0176795 3300037312 Bacteria 1500
114 Ga0395900_0014554 3300037418 Bacteria 8028
115 Ga0395900_0028619 3300037418 Bacteria 5711
116 Ga0395900_0050123 3300037418 Bacteria 4300
117 Ga0395900_0250031 3300037418 Bacteria 1774
118 Ga0395905_0002052 3300037471 Bacteria 22991
119 Ga0395905_0011586 3300037471 Bacteria 8518
120 Ga0395905_0037876 3300037471 Bacteria 4525
121 Ga0395905_0249375 3300037471 Bacteria 1658
122 Ga0395901_0049942 3300038443 Bacteria 4346
123 Ga0395901_0059459 3300038443 Bacteria 3976
124 Ga0395901_0198447 3300038443 Bacteria 2103
125 Ga0466958_0077884 3300045836 Bacteria 2037
126 Ga0495643_0033418 3300046522 Bacteria 2846
127 Ga0495598_0008808 3300046537 Bacteria 2362
128 Ga0495668_0000228 3300046616 Bacteria 81208
129 Ga0495625_0000169 3300046660 Bacteria 102287
130 Ga0495681_0089118 3300047470 Bacteria 1365
131 Ga0496109_0422151 3300048912 Bacteria 1260
132 Ga0496126_0002489 3300048929 Bacteria 24789
133 Ga0501032_0052878 3300049569 Bacteria 2736
134 Ga0501034_0299798 3300049571 Bacteria 1544
135 Ga0501039_0078261 3300049575 Bacteria 2572
136 Ga0501043_0219716 3300049579 Bacteria 1470
137 Ga0501249_009244 3300049679 Bacteria 2050
138 Ga0501044_0415731 3300049823 Bacteria 1255
139 nmdc:mga07m45_31778_c2 3300050496 Bacteria 2505
140 nmdc:mga05p37_356057_c1 3300050507 Bacteria 1722
141 Ga0500568_0000995 3300053139 Bacteria 19381
142 Ga0500604_0024453 3300053151 Bacteria 1730
143 Ga0500616_0010547 3300053153 Bacteria 5521
144 Ga0500627_0000012 3300053158 Bacteria 140613
145 Ga0500627_0065290 3300053158 Bacteria 1606
146 2643822144 2643221560 Bacteria 4801179
147 2643822694 2643221560 Bacteria 4801179
148 2643833394 2643221563 Bacteria 4726935
149 2644054321 2643221608 Bacteria 4724829
150 2852654667 2852653556 Bacteria 4050083
151 2852682281 2852680915 Bacteria 4100189
152 2895882164 2895880812 Bacteria 11255272
153 Ga0501044_0424518
154 JGI24751J29686_10000328
155 JGI24751J29686_10000339
156 Ga0055536_1000433
157 Ga0055536_1003719
158 Ga0055530_10001958
159 Ga0055531_10002073
160 Ga0055531_10010159
161 Ga0055531_10020194
162 Ga0070658_10039151
163 Ga0070658_10100812
164 Ga0068868_100000006
165 Ga0070660_100101174
166 Ga0070692_10277952
167 Ga0070669_100074410
168 Ga0070669_100156256
169 Ga0070675_100074714
170 Ga0070673_100048352
171 Ga0070673_100113247
172 Ga0070659_100045463
173 Ga0070659_100060530
174 Ga0070659_100305302
175 Ga0070667_100055100
176 Ga0070662_100001857
177 Ga0070679_100071959
178 Ga0068855_100043688
179 Ga0068855_100178815
180 Ga0070664_100543399
181 Ga0068854_100008574
182 Ga0068856_100426256
183 Ga0068852_100591045
184 Ga0068863_100017727
185 Ga0068858_100004749
186 Ga0068862_100039760
187 Ga0097621_100042893
188 Ga0075370_10079323
189 Ga0068871_100026178
190 Ga0105248_10102101
191 Ga0105148_100981
192 Ga0157373_10117183
193 Ga0157371_10127038
194 Ga0157370_10229687
195 Ga0157370_10258167
196 Ga0157369_10477247
197 Ga0157372_10039124
198 Ga0209675_1000037
199 Ga0209676_1000227
200 Ga0209676_1000296
201 Ga0209676_1005839
202 Ga0209025_1024339
203 Ga0209050_1000798
204 Ga0209257_1000250
205 Ga0209257_1006595
206 Ga0209257_1009978
207 Ga0207697_10017681
208 Ga0207680_10114560
209 Ga0207647_10214299
210 Ga0207705_10000143
211 Ga0207705_10007609
212 Ga0207705_10007610
213 Ga0207705_10007783
214 Ga0207705_10277167
215 Ga0207707_10198297
216 Ga0207657_10034267
217 Ga0207657_10081172
218 Ga0207652_10015547
219 Ga0207652_10503869
220 Ga0207681_10012959
221 Ga0207681_10207745
222 Ga0207644_10193823
223 Ga0207690_10018043
224 Ga0207690_10023306
225 Ga0207690_10064827
226 Ga0207690_10228939
227 Ga0207706_10001925
228 Ga0207670_10162154
229 Ga0207679_10108196
230 Ga0207679_10409852
231 Ga0207667_10031138
232 Ga0207667_10484035
233 Ga0207651_10051857
234 Ga0207658_10040794
235 Ga0207658_10599017
236 Ga0207677_10000043
237 Ga0207703_10000619
238 Ga0207678_10039817
239 Ga0207702_10407942
240 Ga0207702_10492299
241 Ga0207641_10013540
242 Ga0207674_10621522
243 Ga0207698_10237462
244 Ga0207698_10561128
245 Ga0209983_1006349
246 Ga0268265_10018911
247 Ga0268265_10265714
248 Ga0307405_10446306
249 Ga0307410_10002972
250 Ga0307410_10159997
251 Ga0307407_10023813
252 Ga0307412_10004317
253 Ga0307412_10225280
254 Ga0307409_100029859
255 Ga0307416_100139102
256 Ga0307416_100509724
257 Ga0307414_10000095
258 Ga0307414_10096669
259 Ga0307414_10109112
260 Ga0307414_10189065
261 Ga0307411_10000251
262 Ga0307411_10083478
263 Ga0307510_10175600
264 Ga0395899_0015595
265 Ga0395899_0176795
266 Ga0395900_0014554
267 Ga0395900_0028619
268 Ga0395900_0050123
269 Ga0395900_0250031
270 Ga0395905_0002052
271 Ga0395905_0011586
272 Ga0395905_0037876
273 Ga0395905_0249375
274 Ga0395901_0049942
275 Ga0395901_0059459
276 Ga0395901_0198447
277 Ga0466958_0077884
278 Ga0495643_0033418
279 Ga0495598_0008808
280 Ga0495668_0000228
281 Ga0495625_0000169
282 Ga0495681_0089118
283 Ga0496109_0422151
284 Ga0496126_0002489
285 Ga0501032_0052878
286 Ga0501034_0299798
287 Ga0501039_0078261
288 Ga0501043_0219716
289 Ga0501249_009244
290 Ga0501044_0415731
291 nmdc:mga07m45_31778_c2
292 nmdc:mga05p37_356057_c1
293 Ga0500568_0000995
294 Ga0500604_0024453
295 Ga0500616_0010547
296 Ga0500627_0000012
297 Ga0500627_0065290
298 2643822144
299 2643822694
300 2643833394
301 2644054321
302 2852654667
303 2852682281
304 2895882164

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

15

209

0.96

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

21

254

0.95

PF08659

KR

KR domain

15

192

0.91

PF23441

8

211

0.78

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

17

172

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
3i3o-assembly2.cif.gz_G 2.06 angstrom resolution crystal structure of a short chain dehydrogenase from bacillus anthracis str. 'ames ancestor' in complex with nad-acetone 0.9466 25 286
3i3o-assembly2.cif.gz_G 2.06 angstrom resolution crystal structure of a short chain dehydrogenase from bacillus anthracis str. 'ames ancestor' in complex with nad-acetone 0.9429 25 286
3r3s-assembly1.cif.gz_D structure of the ygha oxidoreductase from salmonella enterica 0.9394 17 285
5u8p-assembly1.cif.gz_A crystal structure of a short chain dehydrogenase from burkholderia cenocepacia j2315 in complex with nad 0.9385 17 285
3i3o-assembly1.cif.gz_A 2.06 angstrom resolution crystal structure of a short chain dehydrogenase from bacillus anthracis str. 'ames ancestor' in complex with nad-acetone 0.9354 17 286
ID Description Score Start End Superfamily
3i3oG00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9466 25 286 3.40.50.720
3i3oG00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9429 25 286 3.40.50.720
3r3sA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9406 17 285 3.40.50.720
af_Q75KH3_1_297_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9311 17 283 3.40.50.720
af_Q10216_3_284_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9265 17 284 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A442HW49-F1-model_v4 SDR family oxidoreductase 0.9605 32 229 GO:0016614
AF-A0A4Q3VP98-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9579 23 230 GO:0016614
AF-A0A3D4LWD8-F1-model_v4 deleted 0.9573 16 217
AF-A0A7W9YAS2-F1-model_v4 NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) 0.9573 25 208 GO:0016614
AF-A0A3C0NID5-F1-model_v4 NAD(P)-dependent oxidoreductase 0.9571 32 283 GO:0016614

Map