F215924

General Info

Members Datasets Scaffolds Average Seq Length
153 101 306 393

Family's Representative Sequence

Representative Sequence 3300005289|Ga0065704_10000246|Ga0065704_1000024618
Length 419
Sequence LIPKLVLRDHWLTVDFNKTKKINPMNILELIGRDQELFTKDISNHELELKSIVSDSRFLVIGGAGSIGQAVTKEIFKRNPKKLHVVDISENNMVELVRDIRSSYGYIDGDFQTFALDIGSLEYDAFIQADGEYDYVLNLSALKHVRSEKDPYTLMRMIEVNVFNTDKTIQQSLDKGVKKYFCVSTDKAANPVNMMGASKRIMEMFLMRRSKDINISTARFANVAFSDGSLLHGFNQRIQKLQPIVAPNDIKRYFVIPKESGELCLMSCIFGENRDVFFPKLSESLHLITFADIAVKYLKELGYEPYLCESEDEARELIKTLPQQGKWPCLFTSSDTTGEKDFEEFFTENETLDMDRFDNLGVIKNEFRINDELLNLFSSRTQELKSNKAWSKEDIVELFFKMIPDFGHRETGKYLDAKM

Samples

Sample ID Description Type Environment
1 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
5 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
6 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
7 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
8 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
9 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
10 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
11 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
12 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
13 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
14 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
15 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
16 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
17 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
18 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
19 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
20 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
21 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
22 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
23 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
24 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
30 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
32 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
33 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
34 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
35 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
36 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
37 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
38 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
39 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
40 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
41 3300044659 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2E Metagenome Unclassified
42 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
43 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
44 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
45 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
46 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
47 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
48 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
49 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
50 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
51 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
52 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
53 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
54 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
55 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
56 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
57 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
58 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
59 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
60 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
61 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
62 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
63 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
64 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
65 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
66 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
67 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
68 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
69 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
70 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
71 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
72 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
73 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
74 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
79 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
80 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
81 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
82 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
83 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
84 2537561836 Rhodanobacter spathiphylli B39 Isolate Unclassified
85 2551306352 Acinetobacter sp. GG2 Isolate Rhizosphere
86 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
87 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
88 2643221562 Rhodanobacter sp. Root561 Isolate Unclassified
89 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
90 2648501241 Vibrio splendidus UCD-SED7 Isolate Rhizosphere
91 2651869818 Vibrio splendidus UCD-SED10 Isolate Rhizosphere
92 2687453341 Pirellula sp. SH-Sr6A Isolate Unclassified
93 2840677318 Chitinophaga alhagiae T22 Isolate Unclassified
94 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
95 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
96 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
97 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
98 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
99 2974310843 Enterobacter sp. SORGH_AS 287 Isolate Unclassified
100 8054357960 Idiomarina rhizosphaerae M1R2S28 Isolate Rhizosphere
101 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.58
Metatranscriptomes 0
Isolates 12.42

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.31
Nodule 1.31
Rhizoplane 1.31
Rhizosphere 76.47
Stem 0
Stem Tuber 0
Unclassified 0.65

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065704_10000246 3300005289 Bacteria 53706
2 SwRhRL2b_contig_1172411 2162886007 Bacteria 3447
3 Ga0065714_10002250 3300005288 Bacteria 34769
4 Ga0065714_10065182 3300005288 Bacteria 12135
5 Ga0065704_10091286 3300005289 Bacteria 2727
6 Ga0070672_100018320 3300005543 Bacteria 5059
7 Ga0070665_100003535 3300005548 Bacteria 16618
8 Ga0068855_100115409 3300005563 Bacteria 3078
9 Ga0079104_1001791 3300006946 Bacteria 13344
10 Ga0105251_10002073 3300009011 Bacteria 16174
11 Ga0105250_10001031 3300009092 Bacteria 15995
12 Ga0105240_10000162 3300009093 Bacteria 136882
13 Ga0105240_10000884 3300009093 Bacteria 53814
14 Ga0111539_10033848 3300009094 Bacteria 6200
15 Ga0105237_10000908 3300009545 Bacteria 39814
16 Ga0105239_10000050 3300010375 Bacteria 173908
17 Ga0157373_10000387 3300013100 Bacteria 35264
18 Ga0157373_10018184 3300013100 Bacteria 5119
19 Ga0157371_10000911 3300013102 Bacteria 33321
20 Ga0157371_10000970 3300013102 Bacteria 31856
21 Ga0157371_10002237 3300013102 Bacteria 18712
22 Ga0157371_10002472 3300013102 Bacteria 17593
23 Ga0157370_10000552 3300013104 Bacteria 46652
24 Ga0157370_10000637 3300013104 Bacteria 43772
25 Ga0157370_10000885 3300013104 Bacteria 38082
26 Ga0157370_10001243 3300013104 Bacteria 31845
27 Ga0157370_10001276 3300013104 Bacteria 31520
28 Ga0157370_10002152 3300013104 Bacteria 24067
29 Ga0157370_10002540 3300013104 Bacteria 21935
30 Ga0157370_10008507 3300013104 Bacteria 11067
31 Ga0157369_10113745 3300013105 Bacteria 2875
32 Ga0157372_10004328 3300013307 Bacteria 15171
33 Ga0157372_10020781 3300013307 Bacteria 7089
34 Ga0157375_10559092 3300013308 Bacteria 1305
35 Ga0182008_10000022 3300014497 Bacteria 207052
36 Ga0182008_10000178 3300014497 Bacteria 49808
37 Ga0182008_10011780 3300014497 Bacteria 4638
38 Ga0182006_1006786 3300015261 Bacteria 5283
39 Ga0182007_10009593 3300015262 Bacteria 3890
40 Ga0163161_10000225 3300017792 Bacteria 51778
41 Ga0163161_10123543 3300017792 Bacteria 1947
42 Ga0207696_1001839 3300025711 Bacteria 10892
43 Ga0207713_1001841 3300025735 Bacteria 16182
44 Ga0207695_10000198 3300025913 Bacteria 167880
45 Ga0207695_10000870 3300025913 Bacteria 54964
46 Ga0207671_10018408 3300025914 Bacteria 5360
47 Ga0207691_10078298 3300025940 Bacteria 2976
48 Ga0209281_1001497 3300027111 Bacteria 13357
49 Ga0268266_10001971 3300028379 Bacteria 23030
50 Ga0265330_10004031 3300031235 Bacteria 7537
51 Ga0265327_10000354 3300031251 Bacteria 87227
52 Ga0265327_10050309 3300031251 Bacteria 2181
53 Ga0307408_100002175 3300031548 Bacteria 14027
54 Ga0307406_10000096 3300031901 Bacteria 50104
55 Ga0307412_10000001 3300031911 Bacteria 822691
56 Ga0307416_100001089 3300032002 Bacteria 14517
57 Ga0307414_10000010 3300032004 Bacteria 357863
58 Ga0307414_10000074 3300032004 Bacteria 94049
59 Ga0307414_10000198 3300032004 Bacteria 40555
60 Ga0307414_10002992 3300032004 Bacteria 8953
61 Ga0307414_10006907 3300032004 Bacteria 6356
62 Ga0307414_10009267 3300032004 Bacteria 5645
63 Ga0307414_10014637 3300032004 Bacteria 4710
64 Ga0307414_10037693 3300032004 Bacteria 3240
65 Ga0395900_0169682 3300037418 Bacteria 2222
66 Ga0439432_000808 3300042006 Bacteria 11686
67 Ga0439432_007850 3300042006 Bacteria 3763
68 Ga0439446_0004550 3300042156 Bacteria 3516
69 Ga0466973_0074707 3300044659 Bacteria 2997
70 Ga0466965_0013862 3300044683 Bacteria 3808
71 Ga0466966_0054480 3300044684 Bacteria 2534
72 Ga0466961_0040272 3300044693 Bacteria 2996
73 Ga0453684_0000015 3300044712 Bacteria 969198
74 Ga0453684_0000020 3300044712 Bacteria 879938
75 Ga0453684_0004803 3300044712 Bacteria 27817
76 Ga0453684_0005922 3300044712 Bacteria 23708
77 Ga0453684_0009764 3300044712 Bacteria 16664
78 Ga0453684_0104802 3300044712 Bacteria 3451
79 Ga0453684_0110966 3300044712 Bacteria 3332
80 Ga0466957_0002133 3300044842 Bacteria 10584
81 Ga0466959_0010728 3300045049 Bacteria 6562
82 Ga0451576_0000001 3300045051 Bacteria 1802108
83 Ga0451576_0088623 3300045051 Bacteria 3219
84 Ga0495627_000002 3300046453 Bacteria 903861
85 Ga0495627_001475 3300046453 Bacteria 13666
86 Ga0495638_0001774 3300046460 Bacteria 18902
87 Ga0495607_0010717 3300046501 Bacteria 6142
88 Ga0495628_0078146 3300046516 Unclassified 2574
89 Ga0495643_0001023 3300046522 Bacteria 28484
90 Ga0495643_0019450 3300046522 Bacteria 3929
91 Ga0495663_0000062 3300046525 Bacteria 50363
92 Ga0495663_0000294 3300046525 Bacteria 18926
93 Ga0495642_0000573 3300046528 Bacteria 18451
94 Ga0495654_0000006 3300046530 Bacteria 451432
95 Ga0495597_0000267 3300046542 Bacteria 47731
96 Ga0495597_0017425 3300046542 Bacteria 3382
97 Ga0495661_0000630 3300046665 Bacteria 35776
98 Ga0495649_0001338 3300046694 Bacteria 18712
99 Ga0495681_0031443 3300047470 Bacteria 2686
100 Ga0495686_0004457 3300047472 Bacteria 11534
101 Ga0496101_0023020 3300048904 Bacteria 4298
102 Ga0496105_0005744 3300048908 Bacteria 9449
103 Ga0496117_0006377 3300048920 Bacteria 11984
104 Ga0496117_0026053 3300048920 Bacteria 4583
105 Ga0496117_0053644 3300048920 Bacteria 2831
106 Ga0496118_0000839 3300048921 Bacteria 48884
107 Ga0496118_0005490 3300048921 Bacteria 14390
108 Ga0496118_0024786 3300048921 Bacteria 5167
109 Ga0496118_0028277 3300048921 Bacteria 4726
110 Ga0496119_0000048 3300048922 Bacteria 185846
111 Ga0496120_0000133 3300048923 Bacteria 126194
112 Ga0496120_0015336 3300048923 Bacteria 5061
113 Ga0496121_0000013 3300048924 Bacteria 614976
114 Ga0496122_0013653 3300048925 Bacteria 7928
115 Ga0496123_0000750 3300048926 Bacteria 52534
116 Ga0496124_0000045 3300048927 Bacteria 287396
117 Ga0496124_0001484 3300048927 Bacteria 34470
118 Ga0496124_0015795 3300048927 Bacteria 7214
119 Ga0496125_0000031 3300048928 Bacteria 365156
120 Ga0496126_0000240 3300048929 Bacteria 117890
121 Ga0496126_0005419 3300048929 Bacteria 14555
122 Ga0496126_0041998 3300048929 Bacteria 4227
123 Ga0496126_0049868 3300048929 Bacteria 3820
124 Ga0501032_0019504 3300049569 Bacteria 4743
125 Ga0501033_0000794 3300049570 Bacteria 28919
126 Ga0501033_0002464 3300049570 Bacteria 15695
127 Ga0501043_0014084 3300049579 Bacteria 6258
128 Ga0501047_0007550 3300049581 Bacteria 10235
129 Ga0501035_0052723 3300049822 Bacteria 3639
130 Ga0501035_0074239 3300049822 Bacteria 3009
131 Ga0501044_0368988 3300049823 Bacteria 1352
132 nmdc:mga08y16_47517_c1 3300050511 Bacteria 4492
133 Ga0500641_0000451 3300053096 Bacteria 14898
134 Ga0500642_0001991 3300053130 Bacteria 5932
135 2511231771 2511231000 Bacteria 4488346
136 2538834743 2537561836 Bacteria 3910579
137 2552747715 2551306352 Bacteria 3873115
138 2585156209 2582581281 Bacteria 4487904
139 2585160418 2582581282 Bacteria 4495830
140 2643829240 2643221562 Bacteria 4048635
141 2644009235 2643221600 Bacteria 5530138
142 2649122201 2648501241 Bacteria 5312320
143 2652976764 2651869818 Bacteria 5864031
144 2688392266 2687453341 Bacteria 6534136
145 2840678439 2840677318 Bacteria 2664183
146 2842908211 2842903701 Bacteria 6986368
147 2896086256 2896085136 Bacteria 6129793
148 2902049542 2902048731 Bacteria 4976191
149 2919194262 2919191525 Bacteria 5765973
150 2954020849 2954016120 Bacteria 6446024
151 2974311299 2974310843 Bacteria 4947816
152 8054358577 8054357960 Bacteria 2867777
153 8055592040 8055588893 Bacteria 3619545
154 Ga0065704_10000246
155 SwRhRL2b_contig_1172411
156 Ga0065714_10002250
157 Ga0065714_10065182
158 Ga0065704_10091286
159 Ga0070672_100018320
160 Ga0070665_100003535
161 Ga0068855_100115409
162 Ga0079104_1001791
163 Ga0105251_10002073
164 Ga0105250_10001031
165 Ga0105240_10000162
166 Ga0105240_10000884
167 Ga0111539_10033848
168 Ga0105237_10000908
169 Ga0105239_10000050
170 Ga0157373_10000387
171 Ga0157373_10018184
172 Ga0157371_10000911
173 Ga0157371_10000970
174 Ga0157371_10002237
175 Ga0157371_10002472
176 Ga0157370_10000552
177 Ga0157370_10000637
178 Ga0157370_10000885
179 Ga0157370_10001243
180 Ga0157370_10001276
181 Ga0157370_10002152
182 Ga0157370_10002540
183 Ga0157370_10008507
184 Ga0157369_10113745
185 Ga0157372_10004328
186 Ga0157372_10020781
187 Ga0157375_10559092
188 Ga0182008_10000022
189 Ga0182008_10000178
190 Ga0182008_10011780
191 Ga0182006_1006786
192 Ga0182007_10009593
193 Ga0163161_10000225
194 Ga0163161_10123543
195 Ga0207696_1001839
196 Ga0207713_1001841
197 Ga0207695_10000198
198 Ga0207695_10000870
199 Ga0207671_10018408
200 Ga0207691_10078298
201 Ga0209281_1001497
202 Ga0268266_10001971
203 Ga0265330_10004031
204 Ga0265327_10000354
205 Ga0265327_10050309
206 Ga0307408_100002175
207 Ga0307406_10000096
208 Ga0307412_10000001
209 Ga0307416_100001089
210 Ga0307414_10000010
211 Ga0307414_10000074
212 Ga0307414_10000198
213 Ga0307414_10002992
214 Ga0307414_10006907
215 Ga0307414_10009267
216 Ga0307414_10014637
217 Ga0307414_10037693
218 Ga0395900_0169682
219 Ga0439432_000808
220 Ga0439432_007850
221 Ga0439446_0004550
222 Ga0466973_0074707
223 Ga0466965_0013862
224 Ga0466966_0054480
225 Ga0466961_0040272
226 Ga0453684_0000015
227 Ga0453684_0000020
228 Ga0453684_0004803
229 Ga0453684_0005922
230 Ga0453684_0009764
231 Ga0453684_0104802
232 Ga0453684_0110966
233 Ga0466957_0002133
234 Ga0466959_0010728
235 Ga0451576_0000001
236 Ga0451576_0088623
237 Ga0495627_000002
238 Ga0495627_001475
239 Ga0495638_0001774
240 Ga0495607_0010717
241 Ga0495628_0078146
242 Ga0495643_0001023
243 Ga0495643_0019450
244 Ga0495663_0000062
245 Ga0495663_0000294
246 Ga0495642_0000573
247 Ga0495654_0000006
248 Ga0495597_0000267
249 Ga0495597_0017425
250 Ga0495661_0000630
251 Ga0495649_0001338
252 Ga0495681_0031443
253 Ga0495686_0004457
254 Ga0496101_0023020
255 Ga0496105_0005744
256 Ga0496117_0006377
257 Ga0496117_0026053
258 Ga0496117_0053644
259 Ga0496118_0000839
260 Ga0496118_0005490
261 Ga0496118_0024786
262 Ga0496118_0028277
263 Ga0496119_0000048
264 Ga0496120_0000133
265 Ga0496120_0015336
266 Ga0496121_0000013
267 Ga0496122_0013653
268 Ga0496123_0000750
269 Ga0496124_0000045
270 Ga0496124_0001484
271 Ga0496124_0015795
272 Ga0496125_0000031
273 Ga0496126_0000240
274 Ga0496126_0005419
275 Ga0496126_0041998
276 Ga0496126_0049868
277 Ga0501032_0019504
278 Ga0501033_0000794
279 Ga0501033_0002464
280 Ga0501043_0014084
281 Ga0501047_0007550
282 Ga0501035_0052723
283 Ga0501035_0074239
284 Ga0501044_0368988
285 nmdc:mga08y16_47517_c1
286 Ga0500641_0000451
287 Ga0500642_0001991
288 2511231771
289 2538834743
290 2552747715
291 2585156209
292 2585160418
293 2643829240
294 2644009235
295 2649122201
296 2652976764
297 2688392266
298 2840678439
299 2842908211
300 2896086256
301 2902049542
302 2919194262
303 2954020849
304 2974311299
305 8054358577
306 8055592040

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

58

365

0.8

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

58

223

0.79

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

59

203

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
3pvz-assembly1.cif.gz_A udp-n-acetylglucosamine 4,6-dehydratase from vibrio fischeri 0.9262 7 366
3pvz-assembly2.cif.gz_D udp-n-acetylglucosamine 4,6-dehydratase from vibrio fischeri 0.9247 7 366
3pvz-assembly2.cif.gz_C udp-n-acetylglucosamine 4,6-dehydratase from vibrio fischeri 0.9151 7 367
3pvz-assembly2.cif.gz_D udp-n-acetylglucosamine 4,6-dehydratase from vibrio fischeri 0.8954 7 366
3pvz-assembly1.cif.gz_A udp-n-acetylglucosamine 4,6-dehydratase from vibrio fischeri 0.8944 7 366
ID Description Score Start End Superfamily
3nzoD02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1; 0.9926 203 313 3.90.25.40
3nzoD02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1; 0.9682 203 313 3.90.25.40
6bwcE01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8834 33 200 3.40.50.720
3vvbA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.879 33 257 3.40.50.720
3pvzB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8747 7 376 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2E1QCU5-F1-model_v4 deleted 1.002 7 95
AF-A0A4U7KKJ4-F1-model_v4 deleted 0.9921 7 144
AF-A0A1Q3J1K8-F1-model_v4 Polysaccharide biosynthesis protein CapD-like domain-containing protein 0.9913 7 109
AF-A0A4U9KS10-F1-model_v4 deleted 0.9891 7 313
AF-A0A355UHD1-F1-model_v4 UDP-N-acetylglucosamine 4,6-dehydratase 0.9845 2 189

Map