F215958

General Info

Members Datasets Scaffolds Average Seq Length
153 97 306 625

Family's Representative Sequence

Representative Sequence 3300005295|Ga0065707_10001337|Ga0065707_100013377
Length 695
Sequence MCVHRADTCAARCQGVSGCFSLIPIKSNNQYLLYNSGRNYKFRITPTQTMSLITVNSISKSFGAEDLFANVSFSVAKGARLALVGPNGIGKTTLLRILIGEEVPSAGTVTRPKSLRLGYLSQEADFELQGELWDVCLEPFADLIRMQGELEKLEVEMSDPAKREPALVRYGTLQHDFERRGGYVYQLQIKQVLTGLGFDPVDFHMSLDHLSGGQRTRAHLARLLLSNPDILLLDEPTNHLDIRAVEWLEGYLSQWDGAAVIVSHDRYFLDHACNALLEMAISGAEYYRGNYTTYLNERENRWQHRLEVFESEREKLMREVEYIKKNISGQNVQQAKGKLRRLTRVVQAVEQVGMDAVVNTNWSQLDVETTTSPFSVEEAERHVRALRPPRRLVPDLGLHLRSTQRSGDLVIRSKNLQVGYPAENSIPQKLLFRTPDIELRREDCAALIGPNGAGKSTFLKTILGQLEPLAGKVMLGASLHVGYFAQAHEGLDPEKTVLDEILAQSPGMLPHQGRDYLGKYLFSGDDAFKKVSMLSGGERGRLALAKLALQDTNLLLLDEPTNHLDIPAQEVLQSVLDAYKGTILLVTHDRYLVDELATQIWEINPDESQMIVFNGTYSQMKEEREKEAARLSQQQTEKIDTRNLNSEARKKLANLSMQLESPFVKPAEAAKLGTEYERVQKEMDQKLGEWERMQA

Samples

Sample ID Description Type Environment
1 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
15 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
16 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
19 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
20 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
21 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
22 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
23 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
25 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
30 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
33 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
34 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
53 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
56 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
57 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
58 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
59 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
60 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
61 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
62 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
63 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
64 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
65 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
66 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
67 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
68 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
69 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
70 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
71 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
72 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
73 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
74 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
75 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
76 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
77 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
78 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
79 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
80 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
81 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
82 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
83 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
84 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
85 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
86 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
87 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
88 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
89 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
90 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
91 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
92 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
93 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
94 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
95 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
96 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
97 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.65
Nodule 0
Rhizoplane 0.65
Rhizosphere 97.39
Stem 0
Stem Tuber 0
Unclassified 1.96

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065707_10001337 3300005295 Bacteria 10640
2 JGI25406J46586_10003155 3300003203 Bacteria 7752
3 Ga0065704_10070229 3300005289 Bacteria 56373
4 Ga0065707_10081970 3300005295 Bacteria 26755
5 Ga0065707_10086297 3300005295 Bacteria 5544
6 Ga0070666_10002717 3300005335 Bacteria 10684
7 Ga0068868_100001102 3300005338 Bacteria 18474
8 Ga0070689_100002484 3300005340 Bacteria 12053
9 Ga0070668_100016882 3300005347 Bacteria 5460
10 Ga0070675_100000023 3300005354 Bacteria 122380
11 Ga0070700_100030601 3300005441 Bacteria 3219
12 Ga0070698_100007410 3300005471 Bacteria 11872
13 Ga0070698_100016795 3300005471 Bacteria 7722
14 Ga0070698_100032111 3300005471 Bacteria 5440
15 Ga0070699_100010454 3300005518 Bacteria 8031
16 Ga0070696_100097992 3300005546 Bacteria 2097
17 Ga0070665_100000085 3300005548 Bacteria 180238
18 Ga0068859_100000016 3300005617 Bacteria 261719
19 Ga0068859_100017318 3300005617 Bacteria 7237
20 Ga0068870_10022026 3300005840 Bacteria 3127
21 Ga0068858_100014731 3300005842 Bacteria 7359
22 Ga0081455_10011643 3300005937 Bacteria 8825
23 Ga0081455_10019592 3300005937 Bacteria 6394
24 Ga0081539_10001449 3300005985 Bacteria 40567
25 Ga0070717_10000691 3300006028 Bacteria 21743
26 Ga0075428_100086316 3300006844 Bacteria 3423
27 Ga0075429_100034188 3300006880 Bacteria 4416
28 Ga0075436_100001696 3300006914 Bacteria 15079
29 Ga0097620_100000016 3300006931 Bacteria 261719
30 Ga0097620_100017318 3300006931 Bacteria 7237
31 Ga0075435_100018741 3300007076 Bacteria 5272
32 Ga0105244_10007608 3300009036 Bacteria 6866
33 Ga0105240_10005057 3300009093 Bacteria 19775
34 Ga0105245_10000457 3300009098 Bacteria 37366
35 Ga0105245_10001241 3300009098 Bacteria 23017
36 Ga0114129_10010600 3300009147 Bacteria 13141
37 Ga0114129_10011230 3300009147 Bacteria 12769
38 Ga0114129_10029923 3300009147 Bacteria 7712
39 Ga0114129_10060744 3300009147 Bacteria 5284
40 Ga0105242_10003189 3300009176 Bacteria 12785
41 Ga0105248_10050571 3300009177 Bacteria 4662
42 Ga0105249_10049950 3300009553 Unclassified 3814
43 Ga0157378_10001935 3300013297 Bacteria 18574
44 Ga0157379_10059927 3300014968 Bacteria 3404
45 Ga0207680_10002401 3300025903 Bacteria 8727
46 Ga0207643_10019832 3300025908 Bacteria 3686
47 Ga0207707_10057120 3300025912 Bacteria 3397
48 Ga0207695_10029176 3300025913 Bacteria 6103
49 Ga0207660_10067672 3300025917 Unclassified 2588
50 Ga0207652_10055374 3300025921 Bacteria 3411
51 Ga0207681_10012986 3300025923 Bacteria 5148
52 Ga0207650_10002641 3300025925 Bacteria 12400
53 Ga0207659_10000009 3300025926 Bacteria 308304
54 Ga0207687_10001085 3300025927 Bacteria 18494
55 Ga0207687_10001464 3300025927 Bacteria 16200
56 Ga0207700_10004848 3300025928 Bacteria 7987
57 Ga0207670_10000549 3300025936 Bacteria 20734
58 Ga0207712_10015732 3300025961 Unclassified 4886
59 Ga0207677_10000081 3300026023 Bacteria 78954
60 Ga0207703_10000215 3300026035 Bacteria 67474
61 Ga0207639_10000084 3300026041 Bacteria 80748
62 Ga0207708_10026252 3300026075 Bacteria 4406
63 Ga0207674_10121518 3300026116 Bacteria 2579
64 Ga0207428_10004217 3300027907 Bacteria 13761
65 Ga0268266_10000145 3300028379 Bacteria 135284
66 Ga0268265_10099381 3300028380 Bacteria 2346
67 Ga0265318_10002191 3300028577 Bacteria 10567
68 Ga0265338_10085267 3300028800 Bacteria 2633
69 Ga0265330_10022013 3300031235 Bacteria 2904
70 Ga0265328_10018025 3300031239 Bacteria 2728
71 Ga0265340_10000800 3300031247 Bacteria 17839
72 Ga0265331_10012999 3300031250 Bacteria 4486
73 Ga0307408_100065209 3300031548 Bacteria 2671
74 Ga0316579_10000899 3300031691 Bacteria 10328
75 Ga0316579_10028143 3300031691 Bacteria 2558
76 Ga0316576_10008706 3300031727 Bacteria 6495
77 Ga0316576_10055720 3300031727 Bacteria 2886
78 Ga0316578_10012593 3300031728 Bacteria 4463
79 Ga0307405_10002502 3300031731 Bacteria 8124
80 Ga0316577_10005672 3300031733 Bacteria 6549
81 Ga0316577_10009626 3300031733 Bacteria 5202
82 Ga0307413_10038122 3300031824 Bacteria 2783
83 Ga0307410_10010238 3300031852 Bacteria 5300
84 Ga0307406_10004646 3300031901 Bacteria 7478
85 Ga0307407_10008338 3300031903 Bacteria 4749
86 Ga0307409_100010634 3300031995 Bacteria 5738
87 Ga0307416_100003960 3300032002 Bacteria 8822
88 Ga0307414_10027622 3300032004 Bacteria 3670
89 Ga0316574_0000485 3300035398 Bacteria 16065
90 Ga0316574_0002588 3300035398 Bacteria 9116
91 Ga0316574_0003571 3300035398 Bacteria 8038
92 Ga0316582_0000340 3300036647 Bacteria 16513
93 Ga0316582_0032342 3300036647 Bacteria 3205
94 Ga0316584_0000972 3300036712 Bacteria 16417
95 Ga0316584_0001320 3300036712 Bacteria 14676
96 Ga0316584_0008183 3300036712 Bacteria 7191
97 Ga0316584_0041517 3300036712 Bacteria 3429
98 Ga0316584_0071313 3300036712 Bacteria 2603
99 Ga0316584_0095643 3300036712 Bacteria 2224
100 Ga0316581_0000226 3300037588 Bacteria 9658
101 Ga0400484_10968 3300038725 Bacteria 5901
102 Ga0400490_44422 3300038726 Bacteria 7227
103 Ga0451577_0001598 3300042876 Bacteria 29510
104 Ga0451577_0003473 3300042876 Bacteria 17528
105 Ga0451577_0003768 3300042876 Bacteria 16530
106 Ga0451577_0011466 3300042876 Bacteria 8382
107 Ga0451577_0018436 3300042876 Bacteria 6430
108 Ga0451577_0096858 3300042876 Bacteria 2634
109 Ga0453683_0001011 3300044673 Bacteria 26391
110 Ga0453683_0002618 3300044673 Bacteria 13780
111 Ga0453683_0013001 3300044673 Bacteria 5444
112 Ga0453684_0000003 3300044712 Bacteria 1481694
113 Ga0453684_0000056 3300044712 Bacteria 513389
114 Ga0453684_0000137 3300044712 Bacteria 323390
115 Ga0453684_0000171 3300044712 Bacteria 286600
116 Ga0453684_0000535 3300044712 Bacteria 144635
117 Ga0453684_0000959 3300044712 Bacteria 94983
118 Ga0453684_0001379 3300044712 Bacteria 70338
119 Ga0453684_0002516 3300044712 Bacteria 44186
120 Ga0453684_0005144 3300044712 Bacteria 26311
121 Ga0453684_0007426 3300044712 Bacteria 20158
122 Ga0453684_0012477 3300044712 Bacteria 14000
123 Ga0453684_0014661 3300044712 Bacteria 12502
124 Ga0453684_0035165 3300044712 Bacteria 6931
125 Ga0453684_0041121 3300044712 Bacteria 6259
126 Ga0453684_0067924 3300044712 Bacteria 4529
127 Ga0453684_0070694 3300044712 Bacteria 4418
128 Ga0453684_0074116 3300044712 Bacteria 4288
129 Ga0453684_0080130 3300044712 Bacteria 4079
130 Ga0453684_0099678 3300044712 Bacteria 3558
131 Ga0453684_0123590 3300044712 Bacteria 3120
132 Ga0453684_0124759 3300044712 Bacteria 3101
133 Ga0453684_0125951 3300044712 Bacteria 3083
134 Ga0451576_0000043 3300045051 Bacteria 335666
135 Ga0451576_0002670 3300045051 Bacteria 25977
136 Ga0451576_0007288 3300045051 Bacteria 13287
137 Ga0451576_0032899 3300045051 Bacteria 5514
138 Ga0451576_0093694 3300045051 Bacteria 3123
139 Ga0495684_0070471 3300047471 Bacteria 2658
140 Ga0496109_0000051 3300048912 Bacteria 126695
141 Ga0501073_0006444 3300049589 Bacteria 8732
142 Ga0501076_0069090 3300049592 Bacteria 2823
143 Ga0501079_0041937 3300049741 Bacteria 3534
144 Ga0501080_0020955 3300049742 Bacteria 6050
145 nmdc:mga05p37_1733_c1 3300050507 Bacteria 25460
146 nmdc:mga05p37_630_c1 3300050507 Bacteria 38995
147 nmdc:mga06r32_6209_c1 3300050510 Bacteria 10722
148 nmdc:mga0rr50_13781_c1 3300050513 Bacteria 5278
149 nmdc:mga08x19_197_c1 3300050514 Bacteria 47258
150 Ga0495655_0000568 3300053083 Bacteria 6077
151 Ga0500616_0000330 3300053153 Bacteria 68044
152 Ga0501084_0019431 3300054114 Bacteria 5661
153 Ga0501082_0068954 3300060353 Bacteria 3045
154 Ga0065707_10001337
155 JGI25406J46586_10003155
156 Ga0065704_10070229
157 Ga0065707_10081970
158 Ga0065707_10086297
159 Ga0070666_10002717
160 Ga0068868_100001102
161 Ga0070689_100002484
162 Ga0070668_100016882
163 Ga0070675_100000023
164 Ga0070700_100030601
165 Ga0070698_100007410
166 Ga0070698_100016795
167 Ga0070698_100032111
168 Ga0070699_100010454
169 Ga0070696_100097992
170 Ga0070665_100000085
171 Ga0068859_100000016
172 Ga0068859_100017318
173 Ga0068870_10022026
174 Ga0068858_100014731
175 Ga0081455_10011643
176 Ga0081455_10019592
177 Ga0081539_10001449
178 Ga0070717_10000691
179 Ga0075428_100086316
180 Ga0075429_100034188
181 Ga0075436_100001696
182 Ga0097620_100000016
183 Ga0097620_100017318
184 Ga0075435_100018741
185 Ga0105244_10007608
186 Ga0105240_10005057
187 Ga0105245_10000457
188 Ga0105245_10001241
189 Ga0114129_10010600
190 Ga0114129_10011230
191 Ga0114129_10029923
192 Ga0114129_10060744
193 Ga0105242_10003189
194 Ga0105248_10050571
195 Ga0105249_10049950
196 Ga0157378_10001935
197 Ga0157379_10059927
198 Ga0207680_10002401
199 Ga0207643_10019832
200 Ga0207707_10057120
201 Ga0207695_10029176
202 Ga0207660_10067672
203 Ga0207652_10055374
204 Ga0207681_10012986
205 Ga0207650_10002641
206 Ga0207659_10000009
207 Ga0207687_10001085
208 Ga0207687_10001464
209 Ga0207700_10004848
210 Ga0207670_10000549
211 Ga0207712_10015732
212 Ga0207677_10000081
213 Ga0207703_10000215
214 Ga0207639_10000084
215 Ga0207708_10026252
216 Ga0207674_10121518
217 Ga0207428_10004217
218 Ga0268266_10000145
219 Ga0268265_10099381
220 Ga0265318_10002191
221 Ga0265338_10085267
222 Ga0265330_10022013
223 Ga0265328_10018025
224 Ga0265340_10000800
225 Ga0265331_10012999
226 Ga0307408_100065209
227 Ga0316579_10000899
228 Ga0316579_10028143
229 Ga0316576_10008706
230 Ga0316576_10055720
231 Ga0316578_10012593
232 Ga0307405_10002502
233 Ga0316577_10005672
234 Ga0316577_10009626
235 Ga0307413_10038122
236 Ga0307410_10010238
237 Ga0307406_10004646
238 Ga0307407_10008338
239 Ga0307409_100010634
240 Ga0307416_100003960
241 Ga0307414_10027622
242 Ga0316574_0000485
243 Ga0316574_0002588
244 Ga0316574_0003571
245 Ga0316582_0000340
246 Ga0316582_0032342
247 Ga0316584_0000972
248 Ga0316584_0001320
249 Ga0316584_0008183
250 Ga0316584_0041517
251 Ga0316584_0071313
252 Ga0316584_0095643
253 Ga0316581_0000226
254 Ga0400484_10968
255 Ga0400490_44422
256 Ga0451577_0001598
257 Ga0451577_0003473
258 Ga0451577_0003768
259 Ga0451577_0011466
260 Ga0451577_0018436
261 Ga0451577_0096858
262 Ga0453683_0001011
263 Ga0453683_0002618
264 Ga0453683_0013001
265 Ga0453684_0000003
266 Ga0453684_0000056
267 Ga0453684_0000137
268 Ga0453684_0000171
269 Ga0453684_0000535
270 Ga0453684_0000959
271 Ga0453684_0001379
272 Ga0453684_0002516
273 Ga0453684_0005144
274 Ga0453684_0007426
275 Ga0453684_0012477
276 Ga0453684_0014661
277 Ga0453684_0035165
278 Ga0453684_0041121
279 Ga0453684_0067924
280 Ga0453684_0070694
281 Ga0453684_0074116
282 Ga0453684_0080130
283 Ga0453684_0099678
284 Ga0453684_0123590
285 Ga0453684_0124759
286 Ga0453684_0125951
287 Ga0451576_0000043
288 Ga0451576_0002670
289 Ga0451576_0007288
290 Ga0451576_0032899
291 Ga0451576_0093694
292 Ga0495684_0070471
293 Ga0496109_0000051
294 Ga0501073_0006444
295 Ga0501076_0069090
296 Ga0501079_0041937
297 Ga0501080_0020955
298 nmdc:mga05p37_1733_c1
299 nmdc:mga05p37_630_c1
300 nmdc:mga06r32_6209_c1
301 nmdc:mga0rr50_13781_c1
302 nmdc:mga08x19_197_c1
303 Ga0495655_0000568
304 Ga0500616_0000330
305 Ga0501084_0019431
306 Ga0501082_0068954

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12848

ABC_tran_Xtn

ABC transporter

277

359

0.9

PF00005

ABC_tran

ABC transporter

68

238

0.88

PF00005

ABC_tran

ABC transporter

432

562

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
5zxd-assembly1.cif.gz_A crystal structure of atp-bound human abcf1 0.8469 1 579
5zxd-assembly1.cif.gz_A crystal structure of atp-bound human abcf1 0.8338 1 579
6r84-assembly1.cif.gz_A yeast vms1 (q295l)-60s ribosomal subunit complex (pre-state with arb1) 0.8209 8 573
5zxd-assembly2.cif.gz_B crystal structure of atp-bound human abcf1 0.8192 1 592
6xjh-assembly1.cif.gz_D pmtcd abc exporter without the basket domain at c2 symmetry 0.8167 1 241
ID Description Score Start End Superfamily
af_Q2FWL5_1_289_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9726 1 277 3.40.50.300
af_Q2FWL5_1_289_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9296 1 277 3.40.50.300
af_O53915_4_138_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9044 138 245 3.40.50.300
af_Q8IIE9_544_810_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8843 358 573 3.40.50.300
af_Q8T6B8_181_454_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8783 1 282 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A3D5B5A9-F1-model_v4 ABC transporter domain-containing protein 0.9739 1 186 GO:0005524
GO:0016887
AF-A0A351ZZN4-F1-model_v4 Glycosyl transferase family 2 0.9585 134 239 GO:0005524
GO:0016740
GO:0016887
AF-A0A7C4J5M4-F1-model_v4 ABC-F family ATP-binding cassette domain-containing protein 0.9543 1 239 GO:0005524
GO:0016887
AF-A0A3D5B5A9-F1-model_v4 ABC transporter domain-containing protein 0.9538 1 186 GO:0005524
GO:0016887
AF-A0A7V3NI62-F1-model_v4 ABC-F family ATP-binding cassette domain-containing protein 0.9536 1 562 GO:0005524
GO:0016887

Map