F217425
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 153 | 114 | 306 | 314 |
Family's Representative Sequence
| Representative Sequence | 3300031901|Ga0307406_10000632|Ga0307406_1000063213 |
| Length | 358 |
| Sequence | MFSLPSWGGRNRLFPTTSAMTSAPLPDAGSNWVDRHAPEGLKPWLKLGRFDRPIGIWLLLLPGWQGIALALASERRTSSVYDLWLVIGFAIGACLMRAAGCAFNDIVDRDIDVKVARTAARPVASGRISVKKALAFTAACCLISLLILLTLNLTAILLGVASLLLVAAYPFMKRITWWPQAWLGLTFNWGALMGFAAAGASTSAVWLVWRTIETDGGNVVSFEYWSQLGSLTLAALALYAGGVFWTLGYDTVYALQDLEDDAMVGVKSSARRLGSNVRLGVSVFYLMAIVFAALAGLLAGLGPLFYLGLTAYAVHLLWQTRRVRADDGPLALRLFKSNREAGLILLLAIILGSVQLPL |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 2 | 3300003578 | Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) | Metatranscriptome | Unclassified |
| 3 | 3300003781 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 | Metagenome | Endosphere |
| 4 | 3300003791 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 | Metagenome | Endosphere |
| 5 | 3300003794 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 | Metagenome | Endosphere |
| 6 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 7 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 15 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 17 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 18 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 19 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 20 | 3300006195 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 | Metagenome | Endosphere |
| 21 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 22 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 23 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 24 | 3300009979 | Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG | Metagenome | Rhizosphere |
| 25 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 26 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 27 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 28 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 29 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 30 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 31 | 3300021361 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 | Metagenome | Rhizosphere |
| 32 | 3300025250 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) | Metagenome | Unclassified |
| 33 | 3300025254 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 34 | 3300025272 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 35 | 3300025292 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 36 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 37 | 3300025298 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 38 | 3300025299 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 39 | 3300025303 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 40 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 41 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 47 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 48 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 49 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 50 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 51 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 52 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300028556 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG | Metagenome | Rhizosphere |
| 57 | 3300030521 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM | Metagenome | Unclassified |
| 58 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 59 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 60 | 3300031730 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM | Metagenome | Unclassified |
| 61 | 3300031824 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 | Metagenome | Rhizosphere |
| 62 | 3300031911 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 | Metagenome | Rhizosphere |
| 63 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 64 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 65 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 66 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 67 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 68 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 69 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 70 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 71 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 72 | 3300046506 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere | Metagenome | Rhizosphere |
| 73 | 3300046539 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere | Metagenome | Rhizosphere |
| 74 | 3300046542 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere | Metagenome | Rhizosphere |
| 75 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 76 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 77 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 78 | 3300046689 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere | Metagenome | Rhizosphere |
| 79 | 3300046694 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere | Metagenome | Rhizosphere |
| 80 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 81 | 3300048904 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled | Metagenome | Rhizoplane |
| 82 | 3300048909 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 | Metagenome | Rhizoplane |
| 83 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 84 | 3300048916 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 | Metagenome | Rhizoplane |
| 85 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 86 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 87 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 88 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 89 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 90 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 91 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 92 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 93 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 94 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 95 | 3300050489 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation | Metagenome | Endosphere |
| 96 | 3300053088 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere | Metagenome | Endosphere |
| 97 | 3300053093 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere | Metagenome | Endosphere |
| 98 | 3300053122 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere | Metagenome | Endosphere |
| 99 | 3300053136 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere | Metagenome | Endosphere |
| 100 | 3300053140 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere | Metagenome | Endosphere |
| 101 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 102 | 3300053730 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere | Metagenome | Endosphere |
| 103 | 2585428106 | Caulobacter sp. OV484 | Isolate | Rhizosphere |
| 104 | 2643221574 | Brevundimonas sp. Root608 | Isolate | Unclassified |
| 105 | 2643221598 | Phenylobacterium sp. Root700 | Isolate | Unclassified |
| 106 | 2643221640 | Caulobacter sp. Root342 | Isolate | Unclassified |
| 107 | 2643221642 | Caulobacter sp. Root343 | Isolate | Unclassified |
| 108 | 2643221663 | Brevundimonas sp. Root1279 | Isolate | Unclassified |
| 109 | 2643221699 | Brevundimonas sp. Root1423 | Isolate | Unclassified |
| 110 | 2857504554 | Caulobacter sp. R-72291 | Isolate | Unclassified |
| 111 | 2884960567 | Caulobacter sp. 602-1 | Isolate | Rhizosphere |
| 112 | 2928531327 | Caulobacter sp. 1776 | Isolate | Rhizosphere |
| 113 | 2928972540 | Brevundimonas sp. 1080 | Isolate | Rhizosphere |
| 114 | 2977240413 | Brevundimonas vesicularis SORGH_AS 431 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 90.2 |
| Metatranscriptomes | 1.31 |
| Isolates | 8.5 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 22.88 |
| Nodule | 0 |
| Rhizoplane | 3.27 |
| Rhizosphere | 59.48 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0307406_10000632 | 3300031901 | Bacteria | 20135 |
| 2 | Ga0006562J51391_1127959 | 3300003578 | Bacteria | 6081 |
| 3 | Ga0006562J51391_1127961 | 3300003578 | Bacteria | 4450 |
| 4 | Ga0055536_1000210 | 3300003781 | Bacteria | 47869 |
| 5 | Ga0055536_1000276 | 3300003781 | Bacteria | 39172 |
| 6 | Ga0055536_1002261 | 3300003781 | Bacteria | 10948 |
| 7 | Ga0055530_10000341 | 3300003791 | Bacteria | 42186 |
| 8 | Ga0055531_10000528 | 3300003794 | Bacteria | 34315 |
| 9 | Ga0055531_10000759 | 3300003794 | Bacteria | 27021 |
| 10 | Ga0055531_10003144 | 3300003794 | Bacteria | 10642 |
| 11 | Ga0055531_10005957 | 3300003794 | Bacteria | 7005 |
| 12 | Ga0065165_1012744 | 3300005262 | Bacteria | 3399 |
| 13 | Ga0070658_10192330 | 3300005327 | Bacteria | 1720 |
| 14 | Ga0070670_100059388 | 3300005331 | Bacteria | 3283 |
| 15 | Ga0070670_100117578 | 3300005331 | Bacteria | 2293 |
| 16 | Ga0070668_100023391 | 3300005347 | Bacteria | 4673 |
| 17 | Ga0070671_100175627 | 3300005355 | Bacteria | 1812 |
| 18 | Ga0070671_100180383 | 3300005355 | Bacteria | 1787 |
| 19 | Ga0070673_100032261 | 3300005364 | Bacteria | 3942 |
| 20 | Ga0070663_100361891 | 3300005455 | Bacteria | 1177 |
| 21 | Ga0070662_100026969 | 3300005457 | Bacteria | 3983 |
| 22 | Ga0068853_100007916 | 3300005539 | Bacteria | 8521 |
| 23 | Ga0068853_100226011 | 3300005539 | Bacteria | 1711 |
| 24 | Ga0070665_100216522 | 3300005548 | Bacteria | 1916 |
| 25 | Ga0068856_100395558 | 3300005614 | Bacteria | 1401 |
| 26 | Ga0068864_100027361 | 3300005618 | Bacteria | 4815 |
| 27 | Ga0068863_100123701 | 3300005841 | Bacteria | 2468 |
| 28 | Ga0068862_100201750 | 3300005844 | Bacteria | 1794 |
| 29 | Ga0075366_10033293 | 3300006195 | Bacteria | 3035 |
| 30 | Ga0105240_10001124 | 3300009093 | Bacteria | 46977 |
| 31 | Ga0105248_10445745 | 3300009177 | Bacteria | 1458 |
| 32 | Ga0105238_10011751 | 3300009551 | Bacteria | 8825 |
| 33 | Ga0105032_102636 | 3300009979 | Bacteria | 1593 |
| 34 | Ga0157373_10000643 | 3300013100 | Bacteria | 27439 |
| 35 | Ga0157371_10014420 | 3300013102 | Bacteria | 5964 |
| 36 | Ga0157370_10017021 | 3300013104 | Bacteria | 7345 |
| 37 | Ga0157369_10023921 | 3300013105 | Bacteria | 6800 |
| 38 | Ga0157375_10259852 | 3300013308 | Bacteria | 1898 |
| 39 | Ga0163163_10050886 | 3300014325 | Bacteria | 4081 |
| 40 | Ga0213872_10005155 | 3300021361 | Bacteria | 6770 |
| 41 | Ga0213872_10029434 | 3300021361 | Bacteria | 2518 |
| 42 | Ga0213872_10033935 | 3300021361 | Bacteria | 2337 |
| 43 | Ga0213872_10071781 | 3300021361 | Bacteria | 1560 |
| 44 | Ga0209026_1001338 | 3300025250 | Bacteria | 11040 |
| 45 | Ga0209148_1000995 | 3300025254 | Bacteria | 18242 |
| 46 | Ga0209455_1001189 | 3300025272 | Bacteria | 12439 |
| 47 | Ga0209676_1000213 | 3300025292 | Bacteria | 128039 |
| 48 | Ga0209676_1000230 | 3300025292 | Bacteria | 121783 |
| 49 | Ga0209676_1000414 | 3300025292 | Bacteria | 76877 |
| 50 | Ga0209676_1001646 | 3300025292 | Bacteria | 19617 |
| 51 | Ga0209564_1013751 | 3300025295 | Bacteria | 3412 |
| 52 | Ga0209050_1000090 | 3300025298 | Bacteria | 253783 |
| 53 | Ga0209050_1000233 | 3300025298 | Bacteria | 121806 |
| 54 | Ga0209050_1015286 | 3300025298 | Bacteria | 3236 |
| 55 | Ga0209256_1017636 | 3300025299 | Bacteria | 2359 |
| 56 | Ga0209051_1002281 | 3300025303 | Bacteria | 14016 |
| 57 | Ga0209257_1000059 | 3300025304 | Bacteria | 378097 |
| 58 | Ga0209257_1000282 | 3300025304 | Bacteria | 113789 |
| 59 | Ga0209257_1000542 | 3300025304 | Bacteria | 64861 |
| 60 | Ga0209257_1008914 | 3300025304 | Bacteria | 5525 |
| 61 | Ga0207705_10142944 | 3300025909 | Bacteria | 1788 |
| 62 | Ga0207695_10001000 | 3300025913 | Bacteria | 50091 |
| 63 | Ga0207694_10054808 | 3300025924 | Bacteria | 3094 |
| 64 | Ga0207650_10086477 | 3300025925 | Bacteria | 2387 |
| 65 | Ga0207644_10295231 | 3300025931 | Bacteria | 1304 |
| 66 | Ga0207706_10041223 | 3300025933 | Bacteria | 4093 |
| 67 | Ga0207711_10001892 | 3300025941 | Bacteria | 19067 |
| 68 | Ga0207711_10196426 | 3300025941 | Bacteria | 1840 |
| 69 | Ga0207679_10036581 | 3300025945 | Bacteria | 3483 |
| 70 | Ga0207668_10009389 | 3300025972 | Bacteria | 5861 |
| 71 | Ga0207658_10144135 | 3300025986 | Bacteria | 1932 |
| 72 | Ga0207639_10008302 | 3300026041 | Bacteria | 7116 |
| 73 | Ga0207641_10139850 | 3300026088 | Bacteria | 2183 |
| 74 | Ga0207676_10152415 | 3300026095 | Bacteria | 1992 |
| 75 | Ga0268266_10363210 | 3300028379 | Bacteria | 1363 |
| 76 | Ga0268265_10056895 | 3300028380 | Bacteria | 2978 |
| 77 | Ga0265337_1019863 | 3300028556 | Bacteria | 2112 |
| 78 | Ga0307511_10028350 | 3300030521 | Bacteria | 5086 |
| 79 | Ga0265327_10000875 | 3300031251 | Bacteria | 44465 |
| 80 | Ga0265327_10014170 | 3300031251 | Bacteria | 5232 |
| 81 | Ga0307513_10003150 | 3300031456 | Bacteria | 22539 |
| 82 | Ga0307516_10000001 | 3300031730 | Bacteria | 510338 |
| 83 | Ga0307413_10016255 | 3300031824 | Bacteria | 3839 |
| 84 | Ga0307412_10049119 | 3300031911 | Bacteria | 2779 |
| 85 | Ga0395899_0000016 | 3300037312 | Bacteria | 468322 |
| 86 | Ga0395900_0090137 | 3300037418 | Bacteria | 3152 |
| 87 | Ga0395898_0437403 | 3300037466 | Bacteria | 1246 |
| 88 | Ga0395898_0465007 | 3300037466 | Bacteria | 1204 |
| 89 | Ga0395905_0023220 | 3300037471 | Bacteria | 5862 |
| 90 | Ga0395905_0106619 | 3300037471 | Bacteria | 2631 |
| 91 | Ga0395901_0260792 | 3300038443 | Bacteria | 1804 |
| 92 | Ga0436365_0066484 | 3300039437 | Bacteria | 1665 |
| 93 | Ga0436365_1584433 | 3300039437 | Bacteria | 1986 |
| 94 | Ga0436361_0135423 | 3300039447 | Bacteria | 14563 |
| 95 | Ga0436361_0264772 | 3300039447 | Bacteria | 4218 |
| 96 | Ga0436361_0585469 | 3300039447 | Bacteria | 4425 |
| 97 | Ga0436361_1145978 | 3300039447 | Bacteria | 1224 |
| 98 | Ga0466959_0093885 | 3300045049 | Bacteria | 2153 |
| 99 | Ga0495638_0076783 | 3300046460 | Bacteria | 2035 |
| 100 | Ga0495638_0086637 | 3300046460 | Bacteria | 1893 |
| 101 | Ga0495583_0096936 | 3300046506 | Bacteria | 1263 |
| 102 | Ga0495621_0038432 | 3300046539 | Bacteria | 1670 |
| 103 | Ga0495597_0051877 | 3300046542 | Bacteria | 1807 |
| 104 | Ga0495633_0006907 | 3300046558 | Bacteria | 6643 |
| 105 | Ga0495668_0000141 | 3300046616 | Bacteria | 108840 |
| 106 | Ga0495668_0082557 | 3300046616 | Bacteria | 1763 |
| 107 | Ga0495625_0024424 | 3300046660 | Bacteria | 4599 |
| 108 | Ga0495625_0038950 | 3300046660 | Bacteria | 3474 |
| 109 | Ga0495625_0082144 | 3300046660 | Bacteria | 2241 |
| 110 | Ga0495625_0154971 | 3300046660 | Bacteria | 1538 |
| 111 | Ga0495613_0000196 | 3300046689 | Bacteria | 59720 |
| 112 | Ga0495649_0002415 | 3300046694 | Bacteria | 13178 |
| 113 | Ga0495686_0012802 | 3300047472 | Bacteria | 5853 |
| 114 | Ga0495686_0016935 | 3300047472 | Bacteria | 4924 |
| 115 | Ga0495686_0177218 | 3300047472 | Bacteria | 1237 |
| 116 | Ga0496101_0039150 | 3300048904 | Bacteria | 3370 |
| 117 | Ga0496106_0145117 | 3300048909 | Bacteria | 1869 |
| 118 | Ga0496112_0015866 | 3300048915 | Bacteria | 7040 |
| 119 | Ga0496113_0190451 | 3300048916 | Bacteria | 1628 |
| 120 | Ga0496115_0143064 | 3300048918 | Bacteria | 1973 |
| 121 | Ga0496122_0018905 | 3300048925 | Bacteria | 6328 |
| 122 | Ga0496123_0001649 | 3300048926 | Bacteria | 29965 |
| 123 | Ga0496124_0004035 | 3300048927 | Bacteria | 17450 |
| 124 | Ga0496125_0004945 | 3300048928 | Bacteria | 15078 |
| 125 | Ga0496126_0004737 | 3300048929 | Bacteria | 16041 |
| 126 | Ga0501033_0001849 | 3300049570 | Bacteria | 18406 |
| 127 | Ga0501033_0248333 | 3300049570 | Bacteria | 1262 |
| 128 | Ga0501034_0010964 | 3300049571 | Bacteria | 9414 |
| 129 | Ga0501034_0333371 | 3300049571 | Bacteria | 1448 |
| 130 | Ga0501080_0245402 | 3300049742 | Bacteria | 1634 |
| 131 | Ga0501044_0000588 | 3300049823 | Bacteria | 44117 |
| 132 | nmdc:mga03683_84892_c1 | 3300050489 | Bacteria | 1372 |
| 133 | Ga0500644_0004681 | 3300053088 | Bacteria | 3431 |
| 134 | Ga0500651_0065899 | 3300053093 | Bacteria | 2256 |
| 135 | Ga0500608_000028 | 3300053122 | Bacteria | 66949 |
| 136 | Ga0500559_0002391 | 3300053136 | Bacteria | 9744 |
| 137 | Ga0500573_0005416 | 3300053140 | Bacteria | 6836 |
| 138 | Ga0500622_0005483 | 3300053156 | Bacteria | 7614 |
| 139 | Ga0500622_0011530 | 3300053156 | Bacteria | 4813 |
| 140 | Ga0500645_003753 | 3300053730 | Bacteria | 6055 |
| 141 | 2587919071 | 2585428106 | Bacteria | 5179711 |
| 142 | 2643882639 | 2643221574 | Bacteria | 2789653 |
| 143 | 2643998292 | 2643221598 | Bacteria | 4578346 |
| 144 | 2644227517 | 2643221640 | Bacteria | 5258820 |
| 145 | 2644236965 | 2643221642 | Bacteria | 5357871 |
| 146 | 2644352527 | 2643221663 | Bacteria | 3425771 |
| 147 | 2644549404 | 2643221699 | Bacteria | 5731501 |
| 148 | 2644550448 | 2643221699 | Bacteria | 5731501 |
| 149 | 2857508510 | 2857504554 | Bacteria | 5369913 |
| 150 | 2884961305 | 2884960567 | Bacteria | 5437054 |
| 151 | 2928531769 | 2928531327 | Bacteria | 5101314 |
| 152 | 2928973092 | 2928972540 | Bacteria | 3058286 |
| 153 | 2977242870 | 2977240413 | Bacteria | 3191065 |
| 154 | Ga0307406_10000632 | |||
| 155 | Ga0006562J51391_1127959 | |||
| 156 | Ga0006562J51391_1127961 | |||
| 157 | Ga0055536_1000210 | |||
| 158 | Ga0055536_1000276 | |||
| 159 | Ga0055536_1002261 | |||
| 160 | Ga0055530_10000341 | |||
| 161 | Ga0055531_10000528 | |||
| 162 | Ga0055531_10000759 | |||
| 163 | Ga0055531_10003144 | |||
| 164 | Ga0055531_10005957 | |||
| 165 | Ga0065165_1012744 | |||
| 166 | Ga0070658_10192330 | |||
| 167 | Ga0070670_100059388 | |||
| 168 | Ga0070670_100117578 | |||
| 169 | Ga0070668_100023391 | |||
| 170 | Ga0070671_100175627 | |||
| 171 | Ga0070671_100180383 | |||
| 172 | Ga0070673_100032261 | |||
| 173 | Ga0070663_100361891 | |||
| 174 | Ga0070662_100026969 | |||
| 175 | Ga0068853_100007916 | |||
| 176 | Ga0068853_100226011 | |||
| 177 | Ga0070665_100216522 | |||
| 178 | Ga0068856_100395558 | |||
| 179 | Ga0068864_100027361 | |||
| 180 | Ga0068863_100123701 | |||
| 181 | Ga0068862_100201750 | |||
| 182 | Ga0075366_10033293 | |||
| 183 | Ga0105240_10001124 | |||
| 184 | Ga0105248_10445745 | |||
| 185 | Ga0105238_10011751 | |||
| 186 | Ga0105032_102636 | |||
| 187 | Ga0157373_10000643 | |||
| 188 | Ga0157371_10014420 | |||
| 189 | Ga0157370_10017021 | |||
| 190 | Ga0157369_10023921 | |||
| 191 | Ga0157375_10259852 | |||
| 192 | Ga0163163_10050886 | |||
| 193 | Ga0213872_10005155 | |||
| 194 | Ga0213872_10029434 | |||
| 195 | Ga0213872_10033935 | |||
| 196 | Ga0213872_10071781 | |||
| 197 | Ga0209026_1001338 | |||
| 198 | Ga0209148_1000995 | |||
| 199 | Ga0209455_1001189 | |||
| 200 | Ga0209676_1000213 | |||
| 201 | Ga0209676_1000230 | |||
| 202 | Ga0209676_1000414 | |||
| 203 | Ga0209676_1001646 | |||
| 204 | Ga0209564_1013751 | |||
| 205 | Ga0209050_1000090 | |||
| 206 | Ga0209050_1000233 | |||
| 207 | Ga0209050_1015286 | |||
| 208 | Ga0209256_1017636 | |||
| 209 | Ga0209051_1002281 | |||
| 210 | Ga0209257_1000059 | |||
| 211 | Ga0209257_1000282 | |||
| 212 | Ga0209257_1000542 | |||
| 213 | Ga0209257_1008914 | |||
| 214 | Ga0207705_10142944 | |||
| 215 | Ga0207695_10001000 | |||
| 216 | Ga0207694_10054808 | |||
| 217 | Ga0207650_10086477 | |||
| 218 | Ga0207644_10295231 | |||
| 219 | Ga0207706_10041223 | |||
| 220 | Ga0207711_10001892 | |||
| 221 | Ga0207711_10196426 | |||
| 222 | Ga0207679_10036581 | |||
| 223 | Ga0207668_10009389 | |||
| 224 | Ga0207658_10144135 | |||
| 225 | Ga0207639_10008302 | |||
| 226 | Ga0207641_10139850 | |||
| 227 | Ga0207676_10152415 | |||
| 228 | Ga0268266_10363210 | |||
| 229 | Ga0268265_10056895 | |||
| 230 | Ga0265337_1019863 | |||
| 231 | Ga0307511_10028350 | |||
| 232 | Ga0265327_10000875 | |||
| 233 | Ga0265327_10014170 | |||
| 234 | Ga0307513_10003150 | |||
| 235 | Ga0307516_10000001 | |||
| 236 | Ga0307413_10016255 | |||
| 237 | Ga0307412_10049119 | |||
| 238 | Ga0395899_0000016 | |||
| 239 | Ga0395900_0090137 | |||
| 240 | Ga0395898_0437403 | |||
| 241 | Ga0395898_0465007 | |||
| 242 | Ga0395905_0023220 | |||
| 243 | Ga0395905_0106619 | |||
| 244 | Ga0395901_0260792 | |||
| 245 | Ga0436365_0066484 | |||
| 246 | Ga0436365_1584433 | |||
| 247 | Ga0436361_0135423 | |||
| 248 | Ga0436361_0264772 | |||
| 249 | Ga0436361_0585469 | |||
| 250 | Ga0436361_1145978 | |||
| 251 | Ga0466959_0093885 | |||
| 252 | Ga0495638_0076783 | |||
| 253 | Ga0495638_0086637 | |||
| 254 | Ga0495583_0096936 | |||
| 255 | Ga0495621_0038432 | |||
| 256 | Ga0495597_0051877 | |||
| 257 | Ga0495633_0006907 | |||
| 258 | Ga0495668_0000141 | |||
| 259 | Ga0495668_0082557 | |||
| 260 | Ga0495625_0024424 | |||
| 261 | Ga0495625_0038950 | |||
| 262 | Ga0495625_0082144 | |||
| 263 | Ga0495625_0154971 | |||
| 264 | Ga0495613_0000196 | |||
| 265 | Ga0495649_0002415 | |||
| 266 | Ga0495686_0012802 | |||
| 267 | Ga0495686_0016935 | |||
| 268 | Ga0495686_0177218 | |||
| 269 | Ga0496101_0039150 | |||
| 270 | Ga0496106_0145117 | |||
| 271 | Ga0496112_0015866 | |||
| 272 | Ga0496113_0190451 | |||
| 273 | Ga0496115_0143064 | |||
| 274 | Ga0496122_0018905 | |||
| 275 | Ga0496123_0001649 | |||
| 276 | Ga0496124_0004035 | |||
| 277 | Ga0496125_0004945 | |||
| 278 | Ga0496126_0004737 | |||
| 279 | Ga0501033_0001849 | |||
| 280 | Ga0501033_0248333 | |||
| 281 | Ga0501034_0010964 | |||
| 282 | Ga0501034_0333371 | |||
| 283 | Ga0501080_0245402 | |||
| 284 | Ga0501044_0000588 | |||
| 285 | nmdc:mga03683_84892_c1 | |||
| 286 | Ga0500644_0004681 | |||
| 287 | Ga0500651_0065899 | |||
| 288 | Ga0500608_000028 | |||
| 289 | Ga0500559_0002391 | |||
| 290 | Ga0500573_0005416 | |||
| 291 | Ga0500622_0005483 | |||
| 292 | Ga0500622_0011530 | |||
| 293 | Ga0500645_003753 | |||
| 294 | 2587919071 | |||
| 295 | 2643882639 | |||
| 296 | 2643998292 | |||
| 297 | 2644227517 | |||
| 298 | 2644236965 | |||
| 299 | 2644352527 | |||
| 300 | 2644549404 | |||
| 301 | 2644550448 | |||
| 302 | 2857508510 | |||
| 303 | 2884961305 | |||
| 304 | 2928531769 | |||
| 305 | 2928973092 | |||
| 306 | 2977242870 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 4od4-assembly1.cif.gz_A | error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) | 0.8077 | 37 | 336 |
| 4od4-assembly1.cif.gz_A | error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) | 0.7762 | 37 | 336 |
| 7bpu-assembly1.cif.gz_A | structural and mechanistic insights into the biosynthesis of digeranylgeranylglyceryl phosphate synthase in membranes | 0.7417 | 19 | 343 |
| 7bpu-assembly1.cif.gz_A | structural and mechanistic insights into the biosynthesis of digeranylgeranylglyceryl phosphate synthase in membranes | 0.7395 | 19 | 343 |
| 4tq6-assembly2.cif.gz_B | error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) | 0.6503 | 24 | 341 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_Q8I7J4_224_349_1.20.120.1780 | Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);UbiA prenyltransferase | 0.9829 | 223 | 336 | 1.20.120.1780 |
| af_Q54U71_333_454_1.20.120.1780 | Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);UbiA prenyltransferase | 0.9819 | 225 | 336 | 1.20.120.1780 |
| af_Q66JT7_234_356_1.20.120.1780 | Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);UbiA prenyltransferase | 0.9787 | 224 | 339 | 1.20.120.1780 |
| af_Q96H96_249_371_1.20.120.1780 | Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);UbiA prenyltransferase | 0.9772 | 239 | 339 | 1.20.120.1780 |
| af_Q4D2X9_251_372_1.20.120.1780 | Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);UbiA prenyltransferase | 0.9693 | 224 | 339 | 1.20.120.1780 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A7C5G9S3-F1-model_v4 | 4-hydroxybenzoate octaprenyltransferase | 0.9596 | 10 | 244 |
GO:0005886
GO:0006744 GO:0016765 |
| AF-A0A0K8MBK6-F1-model_v4 | 4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.39) (4-HB polyprenyltransferase) | 0.9592 | 22 | 341 |
GO:0005886
GO:0006744 GO:0008412 |
| AF-A0A0N0K5C2-F1-model_v4 | 4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.39) (4-HB polyprenyltransferase) | 0.9582 | 2 | 340 |
GO:0005886
GO:0006744 GO:0008412 |
| AF-A0A3M1JTS5-F1-model_v4 | 4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.39) | 0.957 | 11 | 341 |
GO:0005886
GO:0006744 GO:0008412 |
| AF-A0A4Q3JJT2-F1-model_v4 | deleted | 0.9552 | 11 | 340 |
|