F217555

General Info

Members Datasets Scaffolds Average Seq Length
153 100 153 453

Family's Representative Sequence

Representative Sequence 3300037418|Ga0395900_0003892|Ga0395900_0003892_1415_2740
Length 441
Sequence LSRYTSVTDDDLREMLATIGVASVDELFADVPPAIRLERPLALADGLSEQEVHAELQALAARNVSAEDEISFLGAGMYDSYVPALVDSIITRSEFLTPYTPYQPEVSQGGLQAMFEYQTAISELTGLPVSNASVYEGPSAVAAAGYLAKLHNGRRRFLVSAGVHPHALETLTTLARGWEMEVEQVELFDGVTDVRRLTSLDEDVSALILQQPNFLGAVERLEPLVQAAHDAGALVICNADPISLGLLQAPGAQGVDIVVGEGQTLGNRLDFGGPSFGFFAVTDELVRRLPGRIAGQTHDLDGRLGYVLTLQTREQHIRREKATSNICTAQALNALAGIVYLSWLGRRGLVELAELLVQRTAYARERLDALTGVALSHHQPVVREFPIRIYGDVDATIAHCLANGINPGYRISDNELLVAITERRTRADIDRLADTLEEALT

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
3 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
6 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
7 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
8 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
9 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
10 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
11 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
12 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
13 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
14 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
15 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
16 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
17 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
18 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
19 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
20 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
21 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
22 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
23 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
24 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
25 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
26 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
38 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
39 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
40 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
41 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
42 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
43 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
44 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
45 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
46 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
47 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
48 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
49 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
50 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
51 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
52 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
53 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
54 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
55 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
56 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
57 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
58 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
59 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
60 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
61 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
62 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
63 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
64 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
65 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
66 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
67 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
68 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
69 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
70 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
71 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
72 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
73 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
74 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
75 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
76 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
77 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
78 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
79 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
80 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
81 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
82 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
83 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
84 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
85 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
86 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
87 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
91 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
92 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
93 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
94 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
95 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
96 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
97 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
98 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
99 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
100 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.65
Nodule 0
Rhizoplane 3.27
Rhizosphere 84.31
Stem 0
Stem Tuber 0
Unclassified 11.76

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100220343 3300005329 Bacteria 1803
2 Ga0070669_100019158 3300005353 Bacteria 4890
3 Ga0070659_100000013 3300005366 Bacteria 178795
4 Ga0070714_100009658 3300005435 Bacteria 7597
5 Ga0070714_100045390 3300005435 Bacteria 3724
6 Ga0070714_100161682 3300005435 Bacteria 2026
7 Ga0070710_10000028 3300005437 Bacteria 72258
8 Ga0068856_100100076 3300005614 Bacteria 2891
9 Ga0081455_10080725 3300005937 Bacteria 2665
10 Ga0081455_10112303 3300005937 Bacteria 2163
11 Ga0081538_10000002 3300005981 Bacteria 242010
12 Ga0081538_10006070 3300005981 Bacteria 10735
13 Ga0081539_10041537 3300005985 Bacteria 2687
14 Ga0070717_10000004 3300006028 Bacteria 365525
15 Ga0070717_10046726 3300006028 Bacteria 3543
16 Ga0070717_10108463 3300006028 Bacteria 2365
17 Ga0070717_10143139 3300006028 Bacteria 2064
18 Ga0070717_10187167 3300006028 Bacteria 1807
19 Ga0070716_100062250 3300006173 Bacteria 2163
20 Ga0075428_100064190 3300006844 Bacteria 4021
21 Ga0075430_100010387 3300006846 Bacteria 7884
22 Ga0075431_100181290 3300006847 Bacteria 2161
23 Ga0075433_10069082 3300006852 Bacteria 3102
24 Ga0075434_100057440 3300006871 Bacteria 3867
25 Ga0075429_100024381 3300006880 Bacteria 5248
26 Ga0114129_10005383 3300009147 Bacteria 18068
27 Ga0114129_10063226 3300009147 Bacteria 5169
28 Ga0157374_10079778 3300013296 Bacteria 3102
29 Ga0157380_10159165 3300014326 Bacteria 1961
30 Ga0157377_10083017 3300014745 Bacteria 1876
31 Ga0157379_10014583 3300014968 Bacteria 6893
32 Ga0213873_10008085 3300021358 Bacteria 2135
33 Ga0213876_10002786 3300021384 Bacteria 10180
34 Ga0213876_10016853 3300021384 Bacteria 3860
35 Ga0213875_10000431 3300021388 Bacteria 36614
36 Ga0207692_10000009 3300025898 Bacteria 159859
37 Ga0207643_10089841 3300025908 Bacteria 1790
38 Ga0207695_10096376 3300025913 Bacteria 2960
39 Ga0207693_10002783 3300025915 Bacteria 15140
40 Ga0207681_10016889 3300025923 Bacteria 4576
41 Ga0207700_10016070 3300025928 Bacteria 4962
42 Ga0207700_10162607 3300025928 Bacteria 1855
43 Ga0207664_10000006 3300025929 Bacteria 408702
44 Ga0207664_10000922 3300025929 Bacteria 19749
45 Ga0207690_10000017 3300025932 Bacteria 243513
46 Ga0207690_10088511 3300025932 Bacteria 2181
47 Ga0207706_10179391 3300025933 Bacteria 1860
48 Ga0207708_10008968 3300026075 Bacteria 7401
49 Ga0207702_10052231 3300026078 Bacteria 3458
50 Ga0265326_10000045 3300028558 Bacteria 79810
51 Ga0265319_1001818 3300028563 Bacteria 12171
52 Ga0265334_10000012 3300028573 Bacteria 174358
53 Ga0265336_10005572 3300028666 Bacteria 4633
54 Ga0265338_10003738 3300028800 Bacteria 21159
55 Ga0265338_10106597 3300028800 Bacteria 2268
56 Ga0265324_10003184 3300029957 Bacteria 7942
57 Ga0307416_100104999 3300032002 Bacteria 2472
58 Ga0307415_100005303 3300032126 Bacteria 6824
59 Ga0307415_100053147 3300032126 Bacteria 2758
60 Ga0373937_0005328 3300036401 Bacteria 10995
61 Ga0395900_0003892 3300037418 Bacteria 15948
62 Ga0395898_0003289 3300037466 Bacteria 18160
63 Ga0436364_0240449 3300037853 Bacteria 25321
64 Ga0436364_0409299 3300037853 Bacteria 2123
65 Ga0436364_0528708 3300037853 Bacteria 35377
66 Ga0436364_0621760 3300037853 Bacteria 2038
67 Ga0436364_0737248 3300037853 Bacteria 154680
68 Ga0436365_0013190 3300039437 Bacteria 7507
69 Ga0436365_0340991 3300039437 Bacteria 3875
70 Ga0436365_0378539 3300039437 Bacteria 21711
71 Ga0436365_0780473 3300039437 Bacteria 8080
72 Ga0436365_1487643 3300039437 Bacteria 7653
73 Ga0436365_1727618 3300039437 Bacteria 14282
74 Ga0436365_1868477 3300039437 Bacteria 6327
75 Ga0436360_0013204 3300039438 Bacteria 1922
76 Ga0436360_1048538 3300039438 Bacteria 4731
77 Ga0436361_0235999 3300039447 Bacteria 1791
78 Ga0436363_0347976 3300039450 Bacteria 9292
79 Ga0436363_1010510 3300039450 Bacteria 1960
80 Ga0436363_1632579 3300039450 Bacteria 3098
81 Ga0436362_0527905 3300039453 Bacteria 4707
82 Ga0436362_0729551 3300039453 Bacteria 5253
83 Ga0466969_0004458 3300044656 Bacteria 7450
84 Ga0466965_0042810 3300044683 Bacteria 2235
85 Ga0466966_0032004 3300044684 Bacteria 3411
86 Ga0466961_0006229 3300044693 Bacteria 7580
87 Ga0466961_0028695 3300044693 Bacteria 3578
88 Ga0466961_0098056 3300044693 Bacteria 1848
89 Ga0466963_0012064 3300044694 Bacteria 5280
90 Ga0466963_0014965 3300044694 Bacteria 4794
91 Ga0466963_0042294 3300044694 Bacteria 2991
92 Ga0466963_0139511 3300044694 Bacteria 1679
93 Ga0466971_0003429 3300044719 Bacteria 6779
94 Ga0466970_0065205 3300044765 Bacteria 1954
95 Ga0466957_0010702 3300044842 Bacteria 5274
96 Ga0466957_0024357 3300044842 Bacteria 3582
97 Ga0466959_0010971 3300045049 Bacteria 6501
98 Ga0466959_0022086 3300045049 Bacteria 4701
99 Ga0466959_0022537 3300045049 Bacteria 4657
100 Ga0466959_0038186 3300045049 Bacteria 3548
101 Ga0466959_0041680 3300045049 Bacteria 3389
102 Ga0466959_0042946 3300045049 Bacteria 3334
103 Ga0466959_0084658 3300045049 Bacteria 2282
104 Ga0466958_0003648 3300045836 Bacteria 8032
105 Ga0466958_0006445 3300045836 Bacteria 6387
106 Ga0466958_0010896 3300045836 Bacteria 5105
107 Ga0466958_0012937 3300045836 Bacteria 4740
108 Ga0466958_0050829 3300045836 Bacteria 2509
109 Ga0466958_0146102 3300045836 Bacteria 1490
110 Ga0466967_0043106 3300045976 Bacteria 3905
111 Ga0466967_0051648 3300045976 Bacteria 3604
112 Ga0466967_0288775 3300045976 Bacteria 1575
113 Ga0495592_0014895 3300046454 Bacteria 5902
114 Ga0495651_0006007 3300046462 Bacteria 9268
115 Ga0495653_0035815 3300046463 Bacteria 3914
116 Ga0495582_0000004 3300046473 Bacteria 168322
117 Ga0495608_0003157 3300046511 Bacteria 11780
118 Ga0495628_0060977 3300046516 Bacteria 2959
119 Ga0495652_0101911 3300046529 Bacteria 2327
120 Ga0495640_0088179 3300046533 Bacteria 2051
121 Ga0495635_0011408 3300046663 Bacteria 6233
122 Ga0495657_0012715 3300046675 Bacteria 6242
123 Ga0495599_0093107 3300046678 Bacteria 1880
124 Ga0495658_0000004 3300046683 Bacteria 173598
125 Ga0495604_0022124 3300047317 Bacteria 5074
126 Ga0495674_0012173 3300047319 Bacteria 8108
127 Ga0495672_0035864 3300047320 Bacteria 3051
128 Ga0495680_0050104 3300047322 Bacteria 3266
129 Ga0495675_0025393 3300047444 Bacteria 3778
130 Ga0495684_0153555 3300047471 Bacteria 1720
131 Ga0496100_0000156 3300048903 Bacteria 38167
132 Ga0496104_0082767 3300048907 Bacteria 3061
133 Ga0496104_0329949 3300048907 Bacteria 1439
134 Ga0496110_0105419 3300048913 Bacteria 2529
135 Ga0496112_0027681 3300048915 Bacteria 5467
136 Ga0501036_0193531 3300049572 Bacteria 1711
137 Ga0501040_0080295 3300049576 Bacteria 2259
138 Ga0501042_0112870 3300049578 Bacteria 1957
139 Ga0501070_0014957 3300049586 Bacteria 6529
140 Ga0501076_0154126 3300049592 Bacteria 1870
141 nmdc:mga05p37_148787_c1 3300050507 Bacteria 2866
142 nmdc:mga05p37_64282_c1 3300050507 Bacteria 4515
143 nmdc:mga09592_18470_c1 3300050508 Bacteria 5718
144 nmdc:mga09592_19018_c1 3300050508 Bacteria 5637
145 nmdc:mga0qj67_27450_c1 3300050509 Bacteria 4414
146 nmdc:mga06r32_25649_c1 3300050510 Bacteria 5487
147 nmdc:mga0a205_78610_c1 3300050515 Bacteria 3187
148 Ga0495595_0022492 3300053084 Bacteria 2767
149 Ga0495619_0032832 3300053085 Bacteria 3369
150 Ga0500616_0004097 3300053153 Bacteria 10584
151 Ga0466962_0001610 3300061719 Bacteria 10578
152 Ga0466962_0042088 3300061719 Bacteria 2186
153 Ga0466962_0049113 3300061719 Bacteria 2017

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300045836 Ga0466958_0050829 Ga0466958_0050829_1362_2498 378
2 3300044684 Ga0466966_0032004 Ga0466966_0032004_2250_3389 379
3 3300045976 Ga0466967_0288775 Ga0466967_0288775_58_1368 436
4 3300044693 Ga0466961_0098056 Ga0466961_0098056_499_1812 437
5 3300045049 Ga0466959_0010971 Ga0466959_0010971_2466_3779 437
6 3300045836 Ga0466958_0006445 Ga0466958_0006445_2930_4243 437
7 3300044656 Ga0466969_0004458 Ga0466969_0004458_4866_6182 438
8 3300045049 Ga0466959_0084658 Ga0466959_0084658_816_2132 438
9 3300005981 Ga0081538_10006070 Ga0081538_100060709 439
10 3300032126 Ga0307415_100005303 Ga0307415_1000053031 439
11 3300032126 Ga0307415_100053147 Ga0307415_1000531472 439
12 3300005614 Ga0068856_100100076 Ga0068856_1001000761 440
13 3300026078 Ga0207702_10052231 Ga0207702_100522314 440
14 3300046678 Ga0495599_0093107 Ga0495599_0093107_89_1411 440
15 3300037418 Ga0395900_0003892 Ga0395900_0003892_1415_2740 441
16 3300037466 Ga0395898_0003289 Ga0395898_0003289_9718_11043 441
17 3300061719 Ga0466962_0042088 Ga0466962_0042088_831_2156 441
18 3300006028 Ga0070717_10046726 Ga0070717_100467263 442
19 3300037853 Ga0436364_0621760 Ga0436364_0621760_147_1484 442
20 3300044765 Ga0466970_0065205 Ga0466970_0065205_27_1355 442
21 3300044842 Ga0466957_0010702 Ga0466957_0010702_3346_4674 442
22 3300045049 Ga0466959_0038186 Ga0466959_0038186_1021_2349 442
23 3300045836 Ga0466958_0010896 Ga0466958_0010896_3001_4335 442
24 3300045976 Ga0466967_0043106 Ga0466967_0043106_2339_3667 442
25 3300048907 Ga0496104_0329949 Ga0496104_0329949_84_1412 442
26 3300009147 Ga0114129_10005383 Ga0114129_100053838 444
27 3300050507 nmdc:mga05p37_148787_c1 nmdc:mga05p37_148787_c1_672_2006 444
28 3300050515 nmdc:mga0a205_78610_c1 nmdc:mga0a205_78610_c1_1426_2760 444
29 3300005937 Ga0081455_10080725 Ga0081455_100807252 445
30 3300044683 Ga0466965_0042810 Ga0466965_0042810_541_1887 448
31 3300061719 Ga0466962_0049113 Ga0466962_0049113_301_1647 448
32 3300039437 Ga0436365_0780473 Ga0436365_0780473_4649_6034 449
33 3300013296 Ga0157374_10079778 Ga0157374_100797781 450
34 3300005435 Ga0070714_100045390 Ga0070714_1000453904 451
35 3300021384 Ga0213876_10016853 Ga0213876_100168533 453
36 3300025933 Ga0207706_10179391 Ga0207706_101793912 453
37 3300039437 Ga0436365_1868477 Ga0436365_1868477_2672_4051 453
38 3300006028 Ga0070717_10108463 Ga0070717_101084632 454
39 3300006028 Ga0070717_10187167 Ga0070717_101871672 454
40 3300006173 Ga0070716_100062250 Ga0070716_1000622502 454
41 3300021358 Ga0213873_10008085 Ga0213873_100080852 454
42 3300025915 Ga0207693_10002783 Ga0207693_100027836 454
43 3300025928 Ga0207700_10162607 Ga0207700_101626072 454
44 3300032002 Ga0307416_100104999 Ga0307416_1001049992 454
45 3300036401 Ga0373937_0005328 Ga0373937_0005328_7252_8616 454
46 3300037853 Ga0436364_0240449 Ga0436364_0240449_4534_5898 454
47 3300037853 Ga0436364_0409299 Ga0436364_0409299_191_1555 454
48 3300037853 Ga0436364_0528708 Ga0436364_0528708_10970_12334 454
49 3300039437 Ga0436365_0013190 Ga0436365_0013190_6088_7455 454
50 3300039437 Ga0436365_0340991 Ga0436365_0340991_2486_3850 454
51 3300039437 Ga0436365_1487643 Ga0436365_1487643_651_2015 454
52 3300039437 Ga0436365_1727618 Ga0436365_1727618_12238_13602 454
53 3300039438 Ga0436360_1048538 Ga0436360_1048538_2505_3869 454
54 3300039447 Ga0436361_0235999 Ga0436361_0235999_340_1707 454
55 3300039450 Ga0436363_0347976 Ga0436363_0347976_848_2212 454
56 3300039450 Ga0436363_1632579 Ga0436363_1632579_604_1968 454
57 3300039453 Ga0436362_0527905 Ga0436362_0527905_41_1405 454
58 3300039453 Ga0436362_0729551 Ga0436362_0729551_3420_4784 454
59 3300044693 Ga0466961_0028695 Ga0466961_0028695_632_1996 454
60 3300045049 Ga0466959_0041680 Ga0466959_0041680_1681_3045 454
61 3300045049 Ga0466959_0042946 Ga0466959_0042946_771_2135 454
62 3300045836 Ga0466958_0012937 Ga0466958_0012937_108_1472 454
63 3300046454 Ga0495592_0014895 Ga0495592_0014895_1299_2663 454
64 3300046462 Ga0495651_0006007 Ga0495651_0006007_1404_2768 454
65 3300046463 Ga0495653_0035815 Ga0495653_0035815_1775_3139 454
66 3300046511 Ga0495608_0003157 Ga0495608_0003157_3584_4948 454
67 3300046516 Ga0495628_0060977 Ga0495628_0060977_388_1752 454
68 3300046533 Ga0495640_0088179 Ga0495640_0088179_675_2039 454
69 3300046663 Ga0495635_0011408 Ga0495635_0011408_3440_4804 454
70 3300046675 Ga0495657_0012715 Ga0495657_0012715_2325_3689 454
71 3300047317 Ga0495604_0022124 Ga0495604_0022124_191_1555 454
72 3300047319 Ga0495674_0012173 Ga0495674_0012173_5478_6842 454
73 3300047322 Ga0495680_0050104 Ga0495680_0050104_98_1462 454
74 3300047444 Ga0495675_0025393 Ga0495675_0025393_573_1937 454
75 3300047471 Ga0495684_0153555 Ga0495684_0153555_105_1469 454
76 3300048907 Ga0496104_0082767 Ga0496104_0082767_756_2120 454
77 3300048913 Ga0496110_0105419 Ga0496110_0105419_1130_2494 454
78 3300048915 Ga0496112_0027681 Ga0496112_0027681_605_1969 454
79 3300049586 Ga0501070_0014957 Ga0501070_0014957_4061_5449 454
80 3300053084 Ga0495595_0022492 Ga0495595_0022492_181_1545 454
81 3300053085 Ga0495619_0032832 Ga0495619_0032832_17_1381 454
82 3300021384 Ga0213876_10002786 Ga0213876_100027865 455
83 3300039437 Ga0436365_0378539 Ga0436365_0378539_1318_2685 455
84 3300039438 Ga0436360_0013204 Ga0436360_0013204_177_1544 455
85 3300044693 Ga0466961_0006229 Ga0466961_0006229_3511_4878 455
86 3300044694 Ga0466963_0014965 Ga0466963_0014965_871_2238 455
87 3300044694 Ga0466963_0139511 Ga0466963_0139511_178_1545 455
88 3300044719 Ga0466971_0003429 Ga0466971_0003429_2606_3973 455
89 3300044842 Ga0466957_0024357 Ga0466957_0024357_861_2228 455
90 3300045049 Ga0466959_0022086 Ga0466959_0022086_3148_4515 455
91 3300045049 Ga0466959_0022537 Ga0466959_0022537_1243_2610 455
92 3300045836 Ga0466958_0003648 Ga0466958_0003648_575_1942 455
93 3300045836 Ga0466958_0146102 Ga0466958_0146102_25_1392 455
94 3300046473 Ga0495582_0000004 Ga0495582_0000004_73908_75275 455
95 3300046683 Ga0495658_0000004 Ga0495658_0000004_64281_65648 455
96 3300061719 Ga0466962_0001610 Ga0466962_0001610_5398_6765 455
97 3300005435 Ga0070714_100161682 Ga0070714_1001616822 456
98 3300005937 Ga0081455_10112303 Ga0081455_101123033 456
99 3300006028 Ga0070717_10143139 Ga0070717_101431391 456
100 3300021388 Ga0213875_10000431 Ga0213875_1000043112 456
101 3300025928 Ga0207700_10016070 Ga0207700_100160702 456
102 3300037853 Ga0436364_0737248 Ga0436364_0737248_34940_36310 456
103 3300039450 Ga0436363_1010510 Ga0436363_1010510_536_1918 456
104 3300044694 Ga0466963_0012064 Ga0466963_0012064_1872_3245 456
105 3300044694 Ga0466963_0042294 Ga0466963_0042294_31_1401 456
106 3300045976 Ga0466967_0051648 Ga0466967_0051648_536_1909 456
107 3300046529 Ga0495652_0101911 Ga0495652_0101911_576_1994 456
108 3300006852 Ga0075433_10069082 Ga0075433_100690822 458
109 3300006871 Ga0075434_100057440 Ga0075434_1000574402 458
110 3300014968 Ga0157379_10014583 Ga0157379_100145833 458
111 3300047320 Ga0495672_0035864 Ga0495672_0035864_1046_2437 459
112 3300049576 Ga0501040_0080295 Ga0501040_0080295_163_1542 459
113 3300053153 Ga0500616_0004097 Ga0500616_0004097_2877_4259 459
114 3300005981 Ga0081538_10000002 Ga0081538_10000002270 460
115 3300005985 Ga0081539_10041537 Ga0081539_100415373 460
116 3300006844 Ga0075428_100064190 Ga0075428_1000641902 460
117 3300006846 Ga0075430_100010387 Ga0075430_1000103877 460
118 3300006847 Ga0075431_100181290 Ga0075431_1001812903 460
119 3300006880 Ga0075429_100024381 Ga0075429_1000243813 460
120 3300009147 Ga0114129_10063226 Ga0114129_100632264 460
121 3300014326 Ga0157380_10159165 Ga0157380_101591653 460
122 3300025908 Ga0207643_10089841 Ga0207643_100898412 460
123 3300025932 Ga0207690_10088511 Ga0207690_100885112 460
124 3300026075 Ga0207708_10008968 Ga0207708_100089684 460
125 3300048903 Ga0496100_0000156 Ga0496100_0000156_6393_7775 460
126 3300049572 Ga0501036_0193531 Ga0501036_0193531_261_1646 460
127 3300049592 Ga0501076_0154126 Ga0501076_0154126_237_1619 460
128 3300050507 nmdc:mga05p37_64282_c1 nmdc:mga05p37_64282_c1_287_1669 460
129 3300050508 nmdc:mga09592_19018_c1 nmdc:mga09592_19018_c1_860_2242 460
130 3300050509 nmdc:mga0qj67_27450_c1 nmdc:mga0qj67_27450_c1_910_2292 460
131 3300050510 nmdc:mga06r32_25649_c1 nmdc:mga06r32_25649_c1_3397_4779 460
132 3300005329 Ga0070683_100220343 Ga0070683_1002203431 461
133 3300005353 Ga0070669_100019158 Ga0070669_1000191584 461
134 3300005366 Ga0070659_100000013 Ga0070659_100000013139 461
135 3300005435 Ga0070714_100009658 Ga0070714_1000096586 461
136 3300005437 Ga0070710_10000028 Ga0070710_1000002877 461
137 3300006028 Ga0070717_10000004 Ga0070717_10000004275 461
138 3300014745 Ga0157377_10083017 Ga0157377_100830171 461
139 3300025898 Ga0207692_10000009 Ga0207692_1000000976 461
140 3300025913 Ga0207695_10096376 Ga0207695_100963762 461
141 3300025923 Ga0207681_10016889 Ga0207681_100168894 461
142 3300025929 Ga0207664_10000006 Ga0207664_10000006121 461
143 3300025929 Ga0207664_10000922 Ga0207664_1000092210 461
144 3300025932 Ga0207690_10000017 Ga0207690_10000017168 461
145 3300028558 Ga0265326_10000045 Ga0265326_1000004535 461
146 3300028563 Ga0265319_1001818 Ga0265319_10018182 461
147 3300028573 Ga0265334_10000012 Ga0265334_10000012112 461
148 3300028666 Ga0265336_10005572 Ga0265336_100055724 461
149 3300028800 Ga0265338_10003738 Ga0265338_100037384 461
150 3300028800 Ga0265338_10106597 Ga0265338_101065972 461
151 3300029957 Ga0265324_10003184 Ga0265324_100031845 461
152 3300049578 Ga0501042_0112870 Ga0501042_0112870_156_1541 461
153 3300050508 nmdc:mga09592_18470_c1 nmdc:mga09592_18470_c1_2167_3552 461

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02347

GDC-P

Glycine cleavage system P-protein

2

436

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
8guh-assembly1.cif.gz_A serine palmitoyltransferase from sphingobacterium multivorum complexed with tris 0.7519 113 452
3ftb-assembly2.cif.gz_E the crystal structure of the histidinol-phosphate aminotransferase from clostridium acetobutylicum 0.7508 83 450
3ftb-assembly2.cif.gz_D the crystal structure of the histidinol-phosphate aminotransferase from clostridium acetobutylicum 0.7502 83 450
1jg8-assembly1.cif.gz_C crystal structure of threonine aldolase (low-specificity) 0.7471 113 446
5usr-assembly2.cif.gz_E crystal structure of human nfs1-isd11 in complex with e. coli acyl-carrier protein at 3.09 angstroms 0.7427 83 453
ID Description Score Start End Superfamily
1wytA01 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.8885 349 447 3.90.1150.10
2dr1B01 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.8581 352 450 3.90.1150.10
af_A0A1D6E671_253_349_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.8495 351 450 3.90.1150.10
af_P13196_493_597_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.8487 352 450 3.90.1150.10
af_Q05567_439_537_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.8458 346 450 3.90.1150.10
ID Description Score Start End GO Terms
AF-X1KMC0-F1-model_v4 Glycine cleavage system P-protein N-terminal domain-containing protein 0.9478 127 284 GO:0004375
GO:0009116
AF-A0A3B9WBE2-F1-model_v4 Glycine dehydrogenase 0.9298 326 448 GO:0004375
GO:0009116
AF-X1G8G4-F1-model_v4 Glycine cleavage system P-protein N-terminal domain-containing protein 0.922 150 300 GO:0004375
GO:0009116
AF-X1KMC0-F1-model_v4 Glycine cleavage system P-protein N-terminal domain-containing protein 0.9195 127 284 GO:0004375
GO:0009116
AF-A0A842R685-F1-model_v4 Glycine dehydrogenase (EC 1.4.4.2) 0.9175 336 446 GO:0004375
GO:0009116

Feature Viewer

pLDDT pTM Quality
74.89 0.73 High
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Predicted Structure (AlphaFold2)

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