F218322

General Info

Members Datasets Scaffolds Average Seq Length
153 113 306 893

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2738541302|2738852524
Length 965
Sequence YSSIFKLLKKVKLSQTTNILVKFDKQNQILSMKPLLLSLFFFIFTSTYSKAQGLHTIKGRTIDTASTTLLSGTSIAVLNAKDSTLVKFTRTAENGSFELTGIKNGKFILLVSYPKYADFVDHFTLDSTTQVKDYGKINLTGMAKILADVIIKGNRTAIKIKGDTTEFDPKAYNIEPNSKVEDLIKQFPGFQVDKDGKITAQGKSVPKVLVDGEEFFGDDPTLVTKNLRADMVESVQLYDKASDQASFTGIDDGEKTKTLNIKLKEDKKNGYFGKVQGGYGTKDFYQGQGMFNKFWGKNKFSAYGILGNNGTVGLGWDDRDKYSGSSGLTVSDDGGMYFNYSGGDDFDSYDGRYNGQGLPMARTGGLHFDNKWNKDKESLNTNYKIGSIRVKGSRNSISQNNLASGSQFSTSDEDFDNDLFRQKLDATYEIKIDTTLTMKVSVDGALKKSNTSNHYKTTTNGENDYFLNSSDRKITNEADDQNFNMNLLLTKKLKKKGRTLSLNLNQSINKNSSEGYLNSENKTRNIETGTILDSLTNQLKVNDITNNSFKLNAAYTEPISKTLTVIVNYGLTLMNGKSDRRSFNQSGSGRYDMLDTLYSNNFELNQTINQGGAIFNYKKGKTVINFGSKFSGVNFKQDDVYHNRTYIRNFVNYMPQASYQYRFSQQKSLRINYDGNTNQPSLDQLQPVRVNNDPFNVVKGNQDLRPSFRSSINTNFNSYKVLTNQSIWLSGSYSFTSNPIISDVNTDGAGKSTYTYINFSDKMQTNFYLYGQIGRKIKFLDMNVGLNVDANGNSNYNYITTNQNRVLNNTKNYTYGGGLNISKYKEKKYNFYVRFGPTYNISRVSVGSNSDGIGYTGYFYGNLQLPAKFEISSDGDYQYNGKTQVLNKSFERFIWNASLGKKFFKSESLKFSLTVNDILNQNVGFNRMATNTSISETRNTTIQRYLMFSVSWDFNKMGGGIKTQK

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
4 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
5 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
6 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
7 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
8 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
9 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
12 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
13 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
14 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
15 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
16 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
17 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
18 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
19 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
20 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
21 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
22 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
23 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
24 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
25 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
28 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
29 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
30 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
31 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
32 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
33 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
34 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
35 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
36 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
37 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
38 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
39 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
40 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
42 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
43 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
45 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
47 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
48 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
50 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
55 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
56 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
57 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
58 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
59 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
60 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
61 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
62 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
63 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
64 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
65 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
66 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
67 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
68 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
69 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
70 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
71 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
72 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
73 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
74 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
75 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
76 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
77 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
78 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
79 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
80 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
81 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
82 2738541302 Pedobacter sp. CF074 Isolate Unclassified
83 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
84 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
85 2738541284 Pedobacter sp. YR016 Isolate Unclassified
86 2738543023 Pedobacter sp. OK628 Isolate Unclassified
87 2739367651 Pedobacter sp. OK291 Isolate Unclassified
88 2739367656 Pedobacter sp. CF523 Isolate Unclassified
89 2739367663 Pedobacter sp. YR510 Isolate Unclassified
90 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
91 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
92 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
93 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
94 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
95 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
96 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
97 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
98 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
99 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
100 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
101 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
102 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
103 2914759650 Rhizosphaericola mali Isolate Rhizosphere
104 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
105 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
106 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
107 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
108 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
109 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
110 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
111 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
112 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
113 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 79.08
Metatranscriptomes 0
Isolates 20.92

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.61
Nodule 0
Rhizoplane 0.65
Rhizosphere 62.09
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2963669 2162886007 Bacteria 11905
2 JGI24735J21928_10000324 3300002067 Bacteria 16589
3 JGI25162J39368_1000162 3300002737 Bacteria 74157
4 JGI25152J39213_1000080 3300002773 Bacteria 65432
5 JGI25150J39212_1000003 3300002774 Bacteria 508651
6 JGI25150J39212_1000004 3300002774 Bacteria 417320
7 JGI25151J46595_10000002 3300003187 Bacteria 731381
8 JGI25153J46596_10000015 3300003215 Bacteria 289820
9 JGI25153J46596_10000867 3300003215 Bacteria 18442
10 rootH1_10076361 3300003316 Bacteria 9005
11 rootL2_10144687 3300003322 Bacteria 9545
12 rootH1_10019050 3300003323 Bacteria 8931
13 Ga0055535_1002385 3300003761 Bacteria 6702
14 Ga0055542_1003666 3300003762 Bacteria 4039
15 Ga0055536_1000002 3300003781 Bacteria 605605
16 Ga0055530_10001114 3300003791 Bacteria 21001
17 Ga0065165_1005194 3300005262 Bacteria 7502
18 Ga0065714_10002857 3300005288 Bacteria 16933
19 Ga0065714_10002923 3300005288 Bacteria 9650
20 Ga0065714_10066259 3300005288 Bacteria 7246
21 Ga0065714_10068314 3300005288 Bacteria 4740
22 Ga0065704_10070323 3300005289 Bacteria 32863
23 Ga0070658_10033974 3300005327 Bacteria 4104
24 Ga0070677_10001425 3300005333 Bacteria 7591
25 Ga0070680_100006374 3300005336 Bacteria 8961
26 Ga0070659_100000352 3300005366 Bacteria 35096
27 Ga0070681_10002391 3300005458 Bacteria 17156
28 Ga0070679_100000850 3300005530 Bacteria 26618
29 Ga0075366_10001002 3300006195 Bacteria 13783
30 Ga0075366_10002704 3300006195 Bacteria 9153
31 Ga0105237_10008477 3300009545 Bacteria 11123
32 Ga0105239_10000976 3300010375 Bacteria 40167
33 Ga0105239_10002652 3300010375 Bacteria 22569
34 Ga0157373_10000262 3300013100 Bacteria 42799
35 Ga0157373_10002107 3300013100 Bacteria 15059
36 Ga0157373_10003780 3300013100 Bacteria 11453
37 Ga0157371_10002174 3300013102 Bacteria 19066
38 Ga0157371_10009132 3300013102 Bacteria 7830
39 Ga0157370_10002783 3300013104 Bacteria 20895
40 Ga0157370_10009531 3300013104 Bacteria 10357
41 Ga0157370_10020048 3300013104 Bacteria 6687
42 Ga0157370_10024775 3300013104 Bacteria 5940
43 Ga0157370_10036426 3300013104 Bacteria 4774
44 Ga0157370_10051333 3300013104 Bacteria 3939
45 Ga0157369_10000038 3300013105 Bacteria 189078
46 Ga0163162_10000050 3300013306 Bacteria 120151
47 Ga0163162_10001335 3300013306 Bacteria 23016
48 Ga0157372_10006396 3300013307 Bacteria 12533
49 Ga0157372_10024509 3300013307 Bacteria 6555
50 Ga0182008_10000002 3300014497 Bacteria 480216
51 Ga0182008_10000052 3300014497 Bacteria 103193
52 Ga0182008_10000081 3300014497 Bacteria 75637
53 Ga0182008_10001743 3300014497 Bacteria 14294
54 Ga0182006_1000127 3300015261 Bacteria 81679
55 Ga0182006_1000227 3300015261 Bacteria 53817
56 Ga0182006_1001278 3300015261 Bacteria 15510
57 Ga0182006_1001414 3300015261 Bacteria 14514
58 Ga0182007_10000024 3300015262 Bacteria 181761
59 Ga0182005_1000017 3300015265 Bacteria 331828
60 Ga0183373_1002 3300015682 Bacteria 990153
61 Ga0163161_10000136 3300017792 Bacteria 69043
62 Ga0163161_10000653 3300017792 Bacteria 27687
63 Ga0163161_10000762 3300017792 Bacteria 25326
64 Ga0209437_100102 3300025233 Bacteria 224216
65 Ga0209258_100831 3300025242 Bacteria 17110
66 Ga0207425_1000003 3300025245 Bacteria 1145342
67 Ga0209026_1000478 3300025250 Bacteria 30162
68 Ga0209148_1000161 3300025254 Bacteria 138759
69 Ga0209129_1000014 3300025258 Bacteria 509018
70 Ga0209676_1000022 3300025292 Bacteria 605659
71 Ga0209025_1000007 3300025294 Bacteria 1145109
72 Ga0209758_1000012 3300025297 Bacteria 949866
73 Ga0209050_1000020 3300025298 Bacteria 605671
74 Ga0207426_1000261 3300025302 Bacteria 112697
75 Ga0207426_1001417 3300025302 Bacteria 20013
76 Ga0207682_10003470 3300025893 Bacteria 6833
77 Ga0207690_10001013 3300025932 Bacteria 17954
78 Ga0207691_10026625 3300025940 Bacteria 5425
79 Ga0207667_10106441 3300025949 Bacteria 2893
80 Ga0307515_10002325 3300028794 Bacteria 41513
81 Ga0307515_10003790 3300028794 Bacteria 31653
82 Ga0265338_10018077 3300028800 Bacteria 7565
83 Ga0307405_10000011 3300031731 Bacteria 241071
84 Ga0307407_10000018 3300031903 Bacteria 135979
85 Ga0307412_10000050 3300031911 Bacteria 151527
86 Ga0307416_100000081 3300032002 Bacteria 65986
87 Ga0307414_10000293 3300032004 Bacteria 29252
88 Ga0307414_10000574 3300032004 Bacteria 19147
89 Ga0307414_10004493 3300032004 Bacteria 7581
90 Ga0307414_10011559 3300032004 Bacteria 5182
91 Ga0307507_10000309 3300033179 Bacteria 98028
92 Ga0453684_0059874 3300044712 Bacteria 4904
93 Ga0495650_0002914 3300046471 Bacteria 12995
94 Ga0495585_0000091 3300046492 Bacteria 95620
95 Ga0495585_0002223 3300046492 Bacteria 14062
96 Ga0495606_0003447 3300046507 Bacteria 16780
97 Ga0495606_0005837 3300046507 Bacteria 11609
98 Ga0495610_0000037 3300046512 Bacteria 186354
99 Ga0495610_0000049 3300046512 Bacteria 149009
100 Ga0495610_0000959 3300046512 Bacteria 26649
101 Ga0495648_0009063 3300046524 Bacteria 7766
102 Ga0495609_0015046 3300046538 Bacteria 3626
103 Ga0495633_0000015 3300046558 Bacteria 254484
104 Ga0495633_0004900 3300046558 Bacteria 8358
105 Ga0495668_0000041 3300046616 Bacteria 229462
106 Ga0495625_0000059 3300046660 Bacteria 180330
107 Ga0495625_0001068 3300046660 Bacteria 35670
108 Ga0495625_0030195 3300046660 Bacteria 4047
109 Ga0495661_0000919 3300046665 Bacteria 26956
110 Ga0495661_0022660 3300046665 Bacteria 4084
111 Ga0495649_0001008 3300046694 Bacteria 22135
112 Ga0495687_003426 3300047443 Bacteria 11505
113 Ga0496121_0000008 3300048924 Bacteria 843593
114 Ga0496122_0000804 3300048925 Bacteria 60178
115 Ga0496123_0005636 3300048926 Bacteria 12504
116 Ga0501223_000709 3300049663 Bacteria 7945
117 nmdc:mga0k408_1369_c1 3300050493 Bacteria 13150
118 nmdc:mga0k408_136_c1 3300050493 Bacteria 36823
119 nmdc:mga0k408_17383_c1 3300050493 Bacteria 4007
120 Ga0500651_0000146 3300053093 Bacteria 44767
121 Ga0500618_000010 3300053125 Bacteria 203909
122 2738852524 2738541302 Bacteria 5944758
123 2586208904 2585427687 Bacteria 5544917
124 2599482027 2599185184 Bacteria 6430550
125 2738761784 2738541284 Bacteria 5199923
126 2739302309 2738543023 Bacteria 6767879
127 2739591364 2739367651 Bacteria 6359826
128 2739614777 2739367656 Bacteria 5152243
129 2739646090 2739367663 Bacteria 5040914
130 2776615571 2775506987 Bacteria 5373360
131 2819575354 2818991442 Bacteria 8318214
132 2821141453 2821136567 Bacteria 8080116
133 2842727413 2842722452 Bacteria 6263924
134 2842913809 2842909656 Bacteria 6185908
135 2849283506 2849281842 Bacteria 6065644
136 2852627176 2852623160 Bacteria 4376875
137 2852631032 2852627209 Bacteria 5896285
138 2857631961 2857627736 Bacteria 5625397
139 2884935887 2884933994 Bacteria 4535041
140 2896319417 2896317667 Bacteria 4606601
141 2904447221 2904445276 Bacteria 5310396
142 2904470942 2904467357 Bacteria 8057758
143 2914763362 2914759650 Bacteria 4701441
144 2919190762 2919186247 Bacteria 6244071
145 2919443029 2919437846 Bacteria 6199444
146 2928082082 2928078545 Bacteria 6534839
147 2928153053 2928147474 Bacteria 6512076
148 2932087925 2932082852 Bacteria 6563563
149 2939669028 2939664404 Bacteria 6364494
150 2945998271 2945997725 Bacteria 6404843
151 2954020734 2954016120 Bacteria 6446024
152 2977234278 2977232053 Bacteria 5485925
153 3003233524 3003233435 Bacteria 4458031
154 SwRhRL2b_contig_2963669
155 JGI24735J21928_10000324
156 JGI25162J39368_1000162
157 JGI25152J39213_1000080
158 JGI25150J39212_1000003
159 JGI25150J39212_1000004
160 JGI25151J46595_10000002
161 JGI25153J46596_10000015
162 JGI25153J46596_10000867
163 rootH1_10076361
164 rootL2_10144687
165 rootH1_10019050
166 Ga0055535_1002385
167 Ga0055542_1003666
168 Ga0055536_1000002
169 Ga0055530_10001114
170 Ga0065165_1005194
171 Ga0065714_10002857
172 Ga0065714_10002923
173 Ga0065714_10066259
174 Ga0065714_10068314
175 Ga0065704_10070323
176 Ga0070658_10033974
177 Ga0070677_10001425
178 Ga0070680_100006374
179 Ga0070659_100000352
180 Ga0070681_10002391
181 Ga0070679_100000850
182 Ga0075366_10001002
183 Ga0075366_10002704
184 Ga0105237_10008477
185 Ga0105239_10000976
186 Ga0105239_10002652
187 Ga0157373_10000262
188 Ga0157373_10002107
189 Ga0157373_10003780
190 Ga0157371_10002174
191 Ga0157371_10009132
192 Ga0157370_10002783
193 Ga0157370_10009531
194 Ga0157370_10020048
195 Ga0157370_10024775
196 Ga0157370_10036426
197 Ga0157370_10051333
198 Ga0157369_10000038
199 Ga0163162_10000050
200 Ga0163162_10001335
201 Ga0157372_10006396
202 Ga0157372_10024509
203 Ga0182008_10000002
204 Ga0182008_10000052
205 Ga0182008_10000081
206 Ga0182008_10001743
207 Ga0182006_1000127
208 Ga0182006_1000227
209 Ga0182006_1001278
210 Ga0182006_1001414
211 Ga0182007_10000024
212 Ga0182005_1000017
213 Ga0183373_1002
214 Ga0163161_10000136
215 Ga0163161_10000653
216 Ga0163161_10000762
217 Ga0209437_100102
218 Ga0209258_100831
219 Ga0207425_1000003
220 Ga0209026_1000478
221 Ga0209148_1000161
222 Ga0209129_1000014
223 Ga0209676_1000022
224 Ga0209025_1000007
225 Ga0209758_1000012
226 Ga0209050_1000020
227 Ga0207426_1000261
228 Ga0207426_1001417
229 Ga0207682_10003470
230 Ga0207690_10001013
231 Ga0207691_10026625
232 Ga0207667_10106441
233 Ga0307515_10002325
234 Ga0307515_10003790
235 Ga0265338_10018077
236 Ga0307405_10000011
237 Ga0307407_10000018
238 Ga0307412_10000050
239 Ga0307416_100000081
240 Ga0307414_10000293
241 Ga0307414_10000574
242 Ga0307414_10004493
243 Ga0307414_10011559
244 Ga0307507_10000309
245 Ga0453684_0059874
246 Ga0495650_0002914
247 Ga0495585_0000091
248 Ga0495585_0002223
249 Ga0495606_0003447
250 Ga0495606_0005837
251 Ga0495610_0000037
252 Ga0495610_0000049
253 Ga0495610_0000959
254 Ga0495648_0009063
255 Ga0495609_0015046
256 Ga0495633_0000015
257 Ga0495633_0004900
258 Ga0495668_0000041
259 Ga0495625_0000059
260 Ga0495625_0001068
261 Ga0495625_0030195
262 Ga0495661_0000919
263 Ga0495661_0022660
264 Ga0495649_0001008
265 Ga0495687_003426
266 Ga0496121_0000008
267 Ga0496122_0000804
268 Ga0496123_0005636
269 Ga0501223_000709
270 nmdc:mga0k408_1369_c1
271 nmdc:mga0k408_136_c1
272 nmdc:mga0k408_17383_c1
273 Ga0500651_0000146
274 Ga0500618_000010
275 2738852524
276 2586208904
277 2599482027
278 2738761784
279 2739302309
280 2739591364
281 2739614777
282 2739646090
283 2776615571
284 2819575354
285 2821141453
286 2842727413
287 2842913809
288 2849283506
289 2852627176
290 2852631032
291 2857631961
292 2884935887
293 2896319417
294 2904447221
295 2904470942
296 2914763362
297 2919190762
298 2919443029
299 2928082082
300 2928153053
301 2932087925
302 2939669028
303 2945998271
304 2954020734
305 2977234278
306 3003233524

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14905

OMP_b-brl_3

Outer membrane protein beta-barrel family

491

810

0.85

PF14905

OMP_b-brl_3

Outer membrane protein beta-barrel family

795

952

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
4v4c-assembly3.cif.gz_F crystal structure of pyrogallol-phloroglucinol transhydroxylase from pelobacter acidigallici 0.8959 4 92
2nsm-assembly1.cif.gz_A crystal structure of the human carboxypeptidase n (kininase i) catalytic domain 0.8335 11 96
4p0d-assembly1.cif.gz_A the t6 backbone pilin of serotype m6 streptococcus pyogenes has a modular three-domain structure decorated with variable loops and extensions 0.7986 9 80
3irp-assembly1.cif.gz_X crystal structure of functional region of uafa from staphylococcus saprophyticus at 1.50 angstrom resolution 0.7983 10 96
8bdw-assembly1.cif.gz_H-2 crystal structure of cnab2 domain from lactobacillus plantarum 0.7968 9 95
ID Description Score Start End Superfamily
af_P91359_377_465_2.60.40.1120 Mainly Beta;Sandwich;Immunoglobulin-like;Carboxypeptidase-like, regulatory domain 0.891 11 95 2.60.40.1120
af_Q22825_357_435_2.60.40.1120 Mainly Beta;Sandwich;Immunoglobulin-like;Carboxypeptidase-like, regulatory domain 0.8703 12 94 2.60.40.1120
1ti2B03 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.8682 1 92 2.60.40.10
af_P15087_375_469_2.60.40.1120 Mainly Beta;Sandwich;Immunoglobulin-like;Carboxypeptidase-like, regulatory domain 0.8681 11 106 2.60.40.1120
af_P42787_1124_1208_2.60.40.1120 Mainly Beta;Sandwich;Immunoglobulin-like;Carboxypeptidase-like, regulatory domain 0.8658 11 95 2.60.40.1120
ID Description Score Start End GO Terms
AF-A0A520CWY2-F1-model_v4 TonB-dependent receptor 0.9084 725 872
AF-A0A6L8JM21-F1-model_v4 deleted 0.9043 565 871
AF-A0A520CWY2-F1-model_v4 TonB-dependent receptor 0.8967 725 872
AF-A0A6L8JM21-F1-model_v4 deleted 0.871 565 871
AF-A0A4Q5ZZT9-F1-model_v4 TonB-dependent receptor 0.8625 464 872 GO:0009279

Map