F218324

General Info

Members Datasets Scaffolds Average Seq Length
153 119 306 302

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2738543005|2739204020
Length 334
Sequence PMPSPLPVKDGVGPTRLRVPTSGPWATIAEYVVARFDHMEADDLHRRFDAGEIVGIDGRPIGRGTALGEHVFIWYYRDLPVEVPVPFQEEILHVDDDLVVIDKPHFLPTTPGGRYLRESALVRLRTRLDNADLTPIHRLDRATAGLVLFSARPETRGAYQSLFEKRRIVKVYEAVSALPAGWDADAPAIGGHTVPVLYRNHIEARRGELRVVVDDAREPNSETLIEVSGTGMSASGRAVLHTILRPHTGRMHQLRVHLSALGVGILGDSWYPDLLPEAPDDHSLPLQLLARELEFTDPLSGVPRRFVTQRTLGEAPVTPGCRQAGPTPARSSHT

Samples

Sample ID Description Type Environment
1 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
2 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
3 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
6 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
7 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
8 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
9 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
10 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
11 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
12 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
13 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
14 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
15 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
16 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
17 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
18 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
19 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
20 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
21 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
22 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
23 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
24 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
25 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
26 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
27 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
28 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
29 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
30 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
31 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
32 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
33 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
34 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
35 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
36 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
37 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
38 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
39 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
40 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
41 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
42 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
43 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
44 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
45 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
46 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
47 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
48 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
49 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
50 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
51 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
52 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
53 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
54 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
55 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
56 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
57 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
58 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
59 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
60 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
61 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
62 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
63 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
64 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
65 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
71 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
72 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
73 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
74 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
75 2738543005 Rhodococcus sp. OK519 Isolate Unclassified
76 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
77 2537561592 Arthrobacter crystallopoietes BAB-32 Isolate Rhizosphere
78 2565956761 Rhodococcus qingshengii BKS 20-40 Isolate Rhizosphere
79 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
80 2643221553 Microbacterium sp. Root553 Isolate Unclassified
81 2643221630 Microbacterium sp. Root322 Isolate Unclassified
82 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
83 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
84 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
85 2738543011 Rhodococcus sp. OK611 Isolate Unclassified
86 2744054611 Aldersonia kunmingensis DSM 45001 Isolate Rhizosphere
87 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
88 2765235840 Stenotrophomonas maltophilia AA1 Isolate Unclassified
89 2773857759 Microbacterium sp. 1294 Isolate Unclassified
90 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
91 2842391507 Stenotrophomonas maltophilia SEMIA 4027 Isolate Nodule
92 2842757796 Stenotrophomonas sp. R-72406 Isolate Unclassified
93 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
94 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
95 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
96 2874220319 Stenotrophomonas maltophilia PS5 Isolate Unclassified
97 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
98 2889300758 Rhodococcus sp. PvR099 Isolate Rhizosphere
99 2904535858 Rhodococcus erythropolis 2017 Isolate Unclassified
100 2919089067 Stenotrophomonas sp. 1337 Isolate Rhizosphere
101 2919395869 Microbacterium resistens 2980 Isolate Unclassified
102 2922554459 Rhodococcus sp. 66b Isolate Unclassified
103 2928142448 Prescottella equi DPS 2018 Isolate Unclassified
104 2928496128 Stenotrophomonas indicatrix 1163 Isolate Unclassified
105 2931380184 Stenotrophomonas sp. DR822 Isolate Rhizosphere
106 2932398195 Dietzia sp. 2505 Isolate Rhizosphere
107 2939626828 Stenotrophomonas sp. 2694 Isolate Rhizosphere
108 2939743619 Rhodococcus sp. PvR044 Isolate Rhizosphere
109 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
110 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
111 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
112 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
113 2961047084 Stenotrophomonas maltophilia EP5 Isolate Unclassified
114 2961064222 Stenotrophomonas maltophilia EP13 Isolate Unclassified
115 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
116 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
117 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
118 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
119 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 70.59
Metatranscriptomes 0
Isolates 29.41

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.61
Nodule 0.65
Rhizoplane 1.96
Rhizosphere 56.21
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10032860 3300001979 Bacteria 1654
2 JGI25154J39366_1001893 3300002738 Bacteria 6335
3 Ga0058692_1000002 3300003856 Bacteria 508401
4 Ga0070668_100030812 3300005347 Bacteria 4081
5 Ga0070659_100351259 3300005366 Bacteria 1237
6 Ga0075364_10070732 3300006051 Bacteria 2297
7 Ga0105243_10003700 3300009148 Bacteria 12287
8 Ga0105243_10275173 3300009148 Bacteria 1514
9 Ga0157371_10000337 3300013102 Bacteria 60433
10 Ga0157371_10279929 3300013102 Bacteria 1205
11 Ga0157370_10030689 3300013104 Bacteria 5265
12 Ga0157369_10076296 3300013105 Bacteria 3593
13 Ga0157369_10386203 3300013105 Bacteria 1453
14 Ga0157372_10120493 3300013307 Bacteria 3013
15 Ga0163161_10027035 3300017792 Bacteria 4069
16 Ga0163161_10131093 3300017792 Bacteria 1891
17 Ga0209646_1000224 3300025246 Bacteria 60259
18 Ga0209676_1000324 3300025292 Bacteria 92019
19 Ga0207709_10002852 3300025935 Bacteria 10599
20 Ga0207668_10022108 3300025972 Bacteria 4066
21 Ga0209371_1000004 3300027312 Bacteria 1098197
22 Ga0307517_10004494 3300028786 Bacteria 21409
23 Ga0307515_10001737 3300028794 Bacteria 48507
24 Ga0268256_1000005 3300030500 Bacteria 1082342
25 Ga0307511_10037073 3300030521 Bacteria 4220
26 Ga0307408_100046392 3300031548 Bacteria 3108
27 Ga0307408_100075915 3300031548 Bacteria 2498
28 Ga0307413_10087561 3300031824 Bacteria 2018
29 Ga0307410_10063598 3300031852 Bacteria 2532
30 Ga0307410_10171694 3300031852 Bacteria 1634
31 Ga0307406_10000555 3300031901 Bacteria 21462
32 Ga0307406_10056646 3300031901 Bacteria 2511
33 Ga0307406_10120210 3300031901 Bacteria 1825
34 Ga0307407_10145485 3300031903 Bacteria 1534
35 Ga0307412_10004781 3300031911 Bacteria 7560
36 Ga0307412_10066255 3300031911 Bacteria 2447
37 Ga0307412_10197093 3300031911 Bacteria 1527
38 Ga0307409_100380306 3300031995 Bacteria 1342
39 Ga0307414_10006364 3300032004 Bacteria 6578
40 Ga0307414_10080318 3300032004 Bacteria 2384
41 Ga0307414_10144454 3300032004 Bacteria 1867
42 Ga0307414_10261009 3300032004 Bacteria 1446
43 Ga0395900_0053271 3300037418 Bacteria 4164
44 Ga0395898_0002804 3300037466 Bacteria 19974
45 Ga0439436_0002537 3300041404 Bacteria 5485
46 Ga0439439_0010808 3300041406 Bacteria 2188
47 Ga0439457_001669 3300042014 Bacteria 6592
48 Ga0450911_005203 3300042115 Bacteria 2042
49 Ga0466972_0089436 3300044658 Bacteria 1461
50 Ga0466970_0000114 3300044765 Bacteria 35930
51 Ga0466957_0088486 3300044842 Bacteria 1938
52 Ga0466958_0084882 3300045836 Bacteria 1953
53 Ga0495627_002105 3300046453 Bacteria 10084
54 Ga0495653_0042545 3300046463 Bacteria 3537
55 Ga0495610_0004353 3300046512 Bacteria 10509
56 Ga0495631_0004186 3300046518 Bacteria 7714
57 Ga0495663_0002186 3300046525 Bacteria 5959
58 Ga0495663_0009675 3300046525 Bacteria 2674
59 Ga0495633_0004382 3300046558 Bacteria 9004
60 Ga0495668_0006231 3300046616 Bacteria 7871
61 Ga0495588_0002322 3300046674 Bacteria 8148
62 Ga0495681_0008446 3300047470 Bacteria 6460
63 Ga0495686_0107324 3300047472 Bacteria 1678
64 Ga0495614_0002296 3300048089 Bacteria 8492
65 Ga0496104_0183127 3300048907 Bacteria 2005
66 Ga0496108_0032158 3300048911 Bacteria 4357
67 Ga0496113_0356567 3300048916 Bacteria 1173
68 Ga0496116_0000978 3300048919 Bacteria 35089
69 Ga0496116_0046057 3300048919 Bacteria 2947
70 Ga0496117_0001291 3300048920 Bacteria 36931
71 Ga0496117_0003022 3300048920 Bacteria 20187
72 Ga0496117_0004434 3300048920 Bacteria 15487
73 Ga0496117_0068231 3300048920 Bacteria 2401
74 Ga0496118_0000579 3300048921 Bacteria 60445
75 Ga0496118_0028581 3300048921 Bacteria 4693
76 Ga0496118_0039860 3300048921 Bacteria 3742
77 Ga0496119_0001017 3300048922 Bacteria 35895
78 Ga0496119_0151213 3300048922 Bacteria 1244
79 Ga0496120_0000511 3300048923 Bacteria 60526
80 Ga0496121_0096492 3300048924 Bacteria 2293
81 Ga0496122_0013642 3300048925 Bacteria 7931
82 Ga0496122_0113848 3300048925 Bacteria 1766
83 Ga0496122_0144825 3300048925 Bacteria 1478
84 Ga0496123_0091185 3300048926 Bacteria 1809
85 Ga0496124_0039543 3300048927 Bacteria 4088
86 Ga0496124_0053706 3300048927 Bacteria 3413
87 Ga0496124_0063440 3300048927 Bacteria 3086
88 Ga0496124_0269887 3300048927 Bacteria 1246
89 Ga0496124_0301303 3300048927 Bacteria 1157
90 Ga0496125_0006877 3300048928 Bacteria 12185
91 Ga0496125_0008835 3300048928 Bacteria 10473
92 Ga0496125_0009665 3300048928 Bacteria 9857
93 Ga0496125_0013252 3300048928 Bacteria 8116
94 Ga0496126_0047222 3300048929 Bacteria 3943
95 Ga0496126_0065774 3300048929 Bacteria 3243
96 Ga0501034_0000550 3300049571 Bacteria 59510
97 Ga0501034_0010424 3300049571 Bacteria 9685
98 Ga0501034_0013342 3300049571 Bacteria 8461
99 Ga0501036_0028567 3300049572 Bacteria 4712
100 Ga0501038_0036845 3300049574 Bacteria 4292
101 Ga0501039_0022941 3300049575 Bacteria 4786
102 Ga0501043_0028366 3300049579 Bacteria 4394
103 Ga0501068_0035471 3300049584 Bacteria 2978
104 Ga0501070_0003533 3300049586 Bacteria 13526
105 Ga0501073_0112771 3300049589 Bacteria 1886
106 Ga0501074_0031783 3300049590 Bacteria 3824
107 nmdc:mga00v17_277667_c1 3300050491 Bacteria 1087
108 nmdc:mga00v17_92005_c1 3300050491 Bacteria 1906
109 2739204020 2738543005 Bacteria 5278128
110 2523384046 2523231044 Bacteria 6434991
111 2537901461 2537561592 Bacteria 4348607
112 2566991435 2565956761 Bacteria 6601618
113 2643734994 2643221542 Bacteria 3563959
114 2643786664 2643221553 Bacteria 3544260
115 2644173156 2643221630 Bacteria 3601215
116 2644681342 2643221724 Bacteria 3593515
117 2730230225 2728369380 Bacteria 3620317
118 2738888147 2738541308 Bacteria 7020677
119 2739237957 2738543011 Bacteria 5731169
120 2744958752 2744054611 Bacteria 5611514
121 2747951683 2747842429 Bacteria 3914386
122 2765578710 2765235840 Bacteria 4663337
123 2774384012 2773857759 Bacteria 2963774
124 2785345585 2784746763 Bacteria 9783172
125 2842395020 2842391507 Bacteria 4486072
126 2842758376 2842757796 Bacteria 3981385
127 2852649782 2852646457 Bacteria 3408613
128 2852665684 2852663356 Bacteria 4090475
129 2857724952 2857723135 Bacteria 4217853
130 2874221337 2874220319 Bacteria 4594709
131 2877683258 2877676314 Bacteria 9512378
132 2889303098 2889300758 Bacteria 5690814
133 2904538220 2904535858 Bacteria 6308016
134 2919091842 2919089067 Bacteria 4560942
135 2919396146 2919395869 Bacteria 3704152
136 2922557411 2922554459 Bacteria 6683962
137 2928145755 2928142448 Bacteria 5288925
138 2928496306 2928496128 Bacteria 4631123
139 2931381009 2931380184 Bacteria 4455911
140 2932399496 2932398195 Bacteria 3847976
141 2939629743 2939626828 Bacteria 4695272
142 2939746024 2939743619 Bacteria 5762299
143 2945968427 2945968032 Bacteria 4111363
144 2946036883 2946033335 Bacteria 3835514
145 2946044889 2946041624 Bacteria 4191385
146 2946084499 2946080515 Bacteria 4310960
147 2961048103 2961047084 Bacteria 4594415
148 2961065121 2961064222 Bacteria 4749990
149 2977254461 2977251589 Bacteria 2952848
150 3006393433 3006393351 Bacteria 6615579
151 8004185760 8004182704 Bacteria 3391155
152 8004213640 8004212874 Bacteria 2861420
153 8048412181 8048406513 Bacteria 8936924
154 JGI24740J21852_10032860
155 JGI25154J39366_1001893
156 Ga0058692_1000002
157 Ga0070668_100030812
158 Ga0070659_100351259
159 Ga0075364_10070732
160 Ga0105243_10003700
161 Ga0105243_10275173
162 Ga0157371_10000337
163 Ga0157371_10279929
164 Ga0157370_10030689
165 Ga0157369_10076296
166 Ga0157369_10386203
167 Ga0157372_10120493
168 Ga0163161_10027035
169 Ga0163161_10131093
170 Ga0209646_1000224
171 Ga0209676_1000324
172 Ga0207709_10002852
173 Ga0207668_10022108
174 Ga0209371_1000004
175 Ga0307517_10004494
176 Ga0307515_10001737
177 Ga0268256_1000005
178 Ga0307511_10037073
179 Ga0307408_100046392
180 Ga0307408_100075915
181 Ga0307413_10087561
182 Ga0307410_10063598
183 Ga0307410_10171694
184 Ga0307406_10000555
185 Ga0307406_10056646
186 Ga0307406_10120210
187 Ga0307407_10145485
188 Ga0307412_10004781
189 Ga0307412_10066255
190 Ga0307412_10197093
191 Ga0307409_100380306
192 Ga0307414_10006364
193 Ga0307414_10080318
194 Ga0307414_10144454
195 Ga0307414_10261009
196 Ga0395900_0053271
197 Ga0395898_0002804
198 Ga0439436_0002537
199 Ga0439439_0010808
200 Ga0439457_001669
201 Ga0450911_005203
202 Ga0466972_0089436
203 Ga0466970_0000114
204 Ga0466957_0088486
205 Ga0466958_0084882
206 Ga0495627_002105
207 Ga0495653_0042545
208 Ga0495610_0004353
209 Ga0495631_0004186
210 Ga0495663_0002186
211 Ga0495663_0009675
212 Ga0495633_0004382
213 Ga0495668_0006231
214 Ga0495588_0002322
215 Ga0495681_0008446
216 Ga0495686_0107324
217 Ga0495614_0002296
218 Ga0496104_0183127
219 Ga0496108_0032158
220 Ga0496113_0356567
221 Ga0496116_0000978
222 Ga0496116_0046057
223 Ga0496117_0001291
224 Ga0496117_0003022
225 Ga0496117_0004434
226 Ga0496117_0068231
227 Ga0496118_0000579
228 Ga0496118_0028581
229 Ga0496118_0039860
230 Ga0496119_0001017
231 Ga0496119_0151213
232 Ga0496120_0000511
233 Ga0496121_0096492
234 Ga0496122_0013642
235 Ga0496122_0113848
236 Ga0496122_0144825
237 Ga0496123_0091185
238 Ga0496124_0039543
239 Ga0496124_0053706
240 Ga0496124_0063440
241 Ga0496124_0269887
242 Ga0496124_0301303
243 Ga0496125_0006877
244 Ga0496125_0008835
245 Ga0496125_0009665
246 Ga0496125_0013252
247 Ga0496126_0047222
248 Ga0496126_0065774
249 Ga0501034_0000550
250 Ga0501034_0010424
251 Ga0501034_0013342
252 Ga0501036_0028567
253 Ga0501038_0036845
254 Ga0501039_0022941
255 Ga0501043_0028366
256 Ga0501068_0035471
257 Ga0501070_0003533
258 Ga0501073_0112771
259 Ga0501074_0031783
260 nmdc:mga00v17_277667_c1
261 nmdc:mga00v17_92005_c1
262 2739204020
263 2523384046
264 2537901461
265 2566991435
266 2643734994
267 2643786664
268 2644173156
269 2644681342
270 2730230225
271 2738888147
272 2739237957
273 2744958752
274 2747951683
275 2765578710
276 2774384012
277 2785345585
278 2842395020
279 2842758376
280 2852649782
281 2852665684
282 2857724952
283 2874221337
284 2877683258
285 2889303098
286 2904538220
287 2919091842
288 2919396146
289 2922557411
290 2928145755
291 2928496306
292 2931381009
293 2932399496
294 2939629743
295 2939746024
296 2945968427
297 2946036883
298 2946044889
299 2946084499
300 2961048103
301 2961065121
302 2977254461
303 3006393433
304 8004185760
305 8004213640
306 8048412181

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00849

PseudoU_synth_2

RNA pseudouridylate synthase

97

260

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
2i82-assembly2.cif.gz_B crystal structure of pseudouridine synthase rlua: indirect sequence readout through protein-induced rna structure 0.848 90 304
2i82-assembly2.cif.gz_B crystal structure of pseudouridine synthase rlua: indirect sequence readout through protein-induced rna structure 0.7991 90 304
1xpi-assembly2.cif.gz_B crystal structure of the catalytic domain of e. coli pseudouridine synthase rluc 0.7977 92 306
1xpi-assembly1.cif.gz_A crystal structure of the catalytic domain of e. coli pseudouridine synthase rluc 0.7837 92 306
1v9k-assembly2.cif.gz_B the crystal structure of the catalytic domain of pseudouridine synthase rluc from escherichia coli 0.7833 92 306
ID Description Score Start End Superfamily
af_O07166_77_287_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9545 83 306 3.30.2350.10
af_O07166_77_287_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9457 83 306 3.30.2350.10
af_Q9VKU8_216_417_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9002 91 269 3.30.2350.10
af_O16686_148_361_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.8781 91 269 3.30.2350.10
af_I1KC01_110_361_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.8594 86 280 3.30.2350.10
ID Description Score Start End GO Terms
AF-A0A5M3YHM0-F1-model_v4 deleted 0.9735 1 314
AF-A0A843YPX1-F1-model_v4 Pseudouridine synthase 0.9599 7 308 GO:0000455
GO:0003723
GO:0009982
GO:0140098
AF-A0A843YPX1-F1-model_v4 Pseudouridine synthase 0.9566 7 308 GO:0000455
GO:0003723
GO:0009982
GO:0140098
AF-A0A3D0TF00-F1-model_v4 RluA family pseudouridine synthase 0.9561 82 168 GO:0000455
GO:0003723
GO:0009982
GO:0140098
AF-A0A0F0KSZ0-F1-model_v4 Ribosomal large subunit pseudouridine synthase A (EC 5.4.99.28) 0.952 1 314 GO:0000455
GO:0003723
GO:0160151

Map