F218432

General Info

Members Datasets Scaffolds Average Seq Length
154 124 308 199

Family's Representative Sequence

Representative Sequence 3300001979|JGI24740J21852_10006525|JGI24740J21852_100065252
Length 227
Sequence MNKAELENKHLAELHSLAAEAGVERYRMLTRAELIEKLSDDGGSGDNGAPAREPRSQRGDDKSESGEPGESRPRPFGRRGKQGVTLQGLLLPPESGRQAVLLGDTREACTALLRSVAADLADAAKGPDPVALLIDPSPEELADWKREAPQAEIVAAGQPRHADDALGQAKSRADSGEDVILLVDSLTRLGEAYGDPDAAKQFFDAGRTKATGSGSLTVVAALERPDN

Samples

Sample ID Description Type Environment
1 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
2 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
3 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
4 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
8 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
18 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
24 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
25 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
26 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
27 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
28 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
29 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
30 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
31 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
34 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
35 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
36 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
56 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
57 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
58 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
59 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
60 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
61 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
62 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
63 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
64 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
65 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
66 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
67 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
68 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
69 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
70 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
71 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
72 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
73 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
74 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
75 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
76 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
77 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
78 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
79 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
80 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
81 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
82 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
83 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
84 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
85 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
86 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
87 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
88 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
89 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
90 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
91 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
92 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
93 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
94 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
95 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
96 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
97 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
98 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
99 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
100 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
101 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
102 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
103 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
104 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
105 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
106 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
107 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
108 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
109 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
110 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
111 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
112 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
113 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
114 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
115 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
117 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
118 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
119 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
120 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
121 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
122 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
123 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
124 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.65
Nodule 0
Rhizoplane 11.69
Rhizosphere 80.52
Stem 0
Stem Tuber 0
Unclassified 1.3

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10006525 3300001979 Bacteria 4821
2 Ga0068868_100001365 3300005338 Bacteria 16819
3 Ga0070691_10000001 3300005341 Bacteria 94744
4 Ga0070661_100000199 3300005344 Bacteria 49733
5 Ga0070668_100055467 3300005347 Bacteria 3059
6 Ga0070668_100354815 3300005347 Bacteria 1242
7 Ga0070675_100000025 3300005354 Bacteria 115134
8 Ga0070688_100000149 3300005365 Bacteria 37792
9 Ga0070659_100001957 3300005366 Bacteria 14721
10 Ga0070667_100102766 3300005367 Bacteria 2470
11 Ga0070713_100000092 3300005436 Bacteria 57390
12 Ga0070711_100055059 3300005439 Bacteria 2747
13 Ga0070678_100792841 3300005456 Bacteria 860
14 Ga0070681_10004565 3300005458 Bacteria 13210
15 Ga0070685_10000024 3300005466 Bacteria 101602
16 Ga0070679_100000247 3300005530 Bacteria 45331
17 Ga0070684_100278630 3300005535 Bacteria 1532
18 Ga0068853_100003511 3300005539 Bacteria 11992
19 Ga0070672_100000025 3300005543 Bacteria 67313
20 Ga0070665_100229663 3300005548 Bacteria 1856
21 Ga0070665_100519365 3300005548 Bacteria 1202
22 Ga0068857_100157740 3300005577 Bacteria 2058
23 Ga0068856_100060211 3300005614 Bacteria 3751
24 Ga0068856_100087212 3300005614 Bacteria 3102
25 Ga0068852_100000006 3300005616 Bacteria 159569
26 Ga0068861_100040391 3300005719 Bacteria 3490
27 Ga0068863_100000181 3300005841 Bacteria 67076
28 Ga0068860_100002615 3300005843 Bacteria 18773
29 Ga0081540_1000079 3300005983 Bacteria 103786
30 Ga0070712_100018780 3300006175 Bacteria 4496
31 Ga0068865_100000034 3300006881 Bacteria 84043
32 Ga0075436_100206194 3300006914 Bacteria 1393
33 Ga0105245_10000135 3300009098 Bacteria 70480
34 Ga0105245_10000179 3300009098 Bacteria 60347
35 Ga0105242_10001335 3300009176 Bacteria 19502
36 Ga0105239_10138901 3300010375 Bacteria 2707
37 Ga0157378_10445203 3300013297 Bacteria 1285
38 Ga0157372_10008018 3300013307 Bacteria 11233
39 Ga0163161_10000021 3300017792 Bacteria 208779
40 Ga0207707_10011149 3300025912 Bacteria 7820
41 Ga0207693_10024303 3300025915 Bacteria 4810
42 Ga0207663_10002676 3300025916 Bacteria 8589
43 Ga0207649_10000009 3300025920 Bacteria 295544
44 Ga0207652_10000323 3300025921 Bacteria 49536
45 Ga0207659_10000033 3300025926 Bacteria 113729
46 Ga0207687_10000007 3300025927 Bacteria 604185
47 Ga0207687_10000609 3300025927 Bacteria 24091
48 Ga0207700_10000007 3300025928 Bacteria 345720
49 Ga0207690_10007782 3300025932 Bacteria 6360
50 Ga0207686_10000252 3300025934 Bacteria 40825
51 Ga0207704_10000059 3300025938 Bacteria 76643
52 Ga0207691_10000135 3300025940 Bacteria 67302
53 Ga0207668_10002673 3300025972 Bacteria 10430
54 Ga0207668_10358419 3300025972 Bacteria 1221
55 Ga0207639_10002631 3300026041 Bacteria 12052
56 Ga0207702_10000360 3300026078 Bacteria 52006
57 Ga0207702_10007336 3300026078 Bacteria 9418
58 Ga0207641_10000349 3300026088 Bacteria 55251
59 Ga0207641_10022938 3300026088 Bacteria 5141
60 Ga0207675_100061011 3300026118 Bacteria 3520
61 Ga0207698_10000013 3300026142 Bacteria 255414
62 Ga0207698_10002365 3300026142 Bacteria 11183
63 Ga0268266_10425241 3300028379 Bacteria 1259
64 Ga0265337_1000011 3300028556 Bacteria 87087
65 Ga0265326_10000066 3300028558 Bacteria 59893
66 Ga0265319_1000020 3300028563 Bacteria 153921
67 Ga0265322_10000001 3300028654 Bacteria 543854
68 Ga0265336_10045999 3300028666 Bacteria 1326
69 Ga0265324_10001193 3300029957 Bacteria 15457
70 Ga0265332_10026776 3300031238 Bacteria 2527
71 Ga0265320_10000002 3300031240 Bacteria 542875
72 Ga0265329_10008884 3300031242 Bacteria 3785
73 Ga0265331_10003019 3300031250 Bacteria 11044
74 Ga0265331_10005363 3300031250 Bacteria 7751
75 Ga0265327_10000011 3300031251 Bacteria 543807
76 Ga0265314_10001507 3300031711 Bacteria 25782
77 Ga0466963_0000067 3300044694 Bacteria 35973
78 Ga0466957_0081302 3300044842 Bacteria 2018
79 Ga0495592_0000494 3300046454 Bacteria 28719
80 Ga0495603_0000005 3300046455 Bacteria 75902
81 Ga0495629_0000145 3300046459 Bacteria 61915
82 Ga0495629_0001756 3300046459 Bacteria 17004
83 Ga0495629_0003718 3300046459 Bacteria 11499
84 Ga0495641_0018923 3300046461 Bacteria 3539
85 Ga0495641_0093304 3300046461 Bacteria 1345
86 Ga0495653_0141695 3300046463 Bacteria 1690
87 Ga0495662_0000421 3300046476 Bacteria 18951
88 Ga0495662_0003418 3300046476 Bacteria 8045
89 Ga0495608_0000080 3300046511 Bacteria 71060
90 Ga0495618_0000008 3300046514 Bacteria 204578
91 Ga0495628_0002719 3300046516 Bacteria 15837
92 Ga0495628_0015382 3300046516 Bacteria 6389
93 Ga0495630_0013541 3300046517 Bacteria 5931
94 Ga0495640_0051958 3300046533 Bacteria 2815
95 Ga0495586_0254421 3300046535 Unclassified 1002
96 Ga0495667_0000047 3300046559 Bacteria 117718
97 Ga0495634_0000034 3300046642 Bacteria 106338
98 Ga0495634_0294447 3300046642 Unclassified 982
99 Ga0495635_0000034 3300046663 Bacteria 96408
100 Ga0495588_0000244 3300046674 Bacteria 45880
101 Ga0495657_0026377 3300046675 Bacteria 4114
102 Ga0495647_0000017 3300046681 Bacteria 83387
103 Ga0495658_0004064 3300046683 Bacteria 7206
104 Ga0495613_0000124 3300046689 Bacteria 75971
105 Ga0495624_0000354 3300046690 Bacteria 36299
106 Ga0495624_0014464 3300046690 Bacteria 5354
107 Ga0495600_0005687 3300046809 Bacteria 7532
108 Ga0495581_0086257 3300047315 Bacteria 1820
109 Ga0495604_0000106 3300047317 Bacteria 69765
110 Ga0495680_0000183 3300047322 Bacteria 66401
111 Ga0495680_0000447 3300047322 Bacteria 46180
112 Ga0495680_0009007 3300047322 Bacteria 9017
113 Ga0495675_0059801 3300047444 Bacteria 2416
114 Ga0495679_040627 3300047446 Bacteria 1445
115 Ga0495593_0099661 3300047673 Bacteria 1491
116 Ga0496102_0000115 3300048905 Bacteria 114224
117 Ga0496102_0276283 3300048905 Bacteria 1583
118 Ga0496103_0000008 3300048906 Bacteria 340474
119 Ga0496104_0000004 3300048907 Bacteria 641830
120 Ga0496104_0029026 3300048907 Bacteria 5129
121 Ga0496105_0000001 3300048908 Bacteria 1328178
122 Ga0496105_0048893 3300048908 Bacteria 3491
123 Ga0496106_0000041 3300048909 Bacteria 107155
124 Ga0496107_0003806 3300048910 Bacteria 10133
125 Ga0496108_0044427 3300048911 Bacteria 3709
126 Ga0496109_0000075 3300048912 Bacteria 105050
127 Ga0496109_0122698 3300048912 Bacteria 2421
128 Ga0496110_0000240 3300048913 Bacteria 35546
129 Ga0496111_0008796 3300048914 Bacteria 6705
130 Ga0496114_0168103 3300048917 Bacteria 1910
131 Ga0496115_0000003 3300048918 Bacteria 354994
132 Ga0496115_0000119 3300048918 Bacteria 71710
133 Ga0496115_0008333 3300048918 Bacteria 7667
134 Ga0496116_0001163 3300048919 Bacteria 31040
135 Ga0496117_0007722 3300048920 Bacteria 10402
136 Ga0496118_0001190 3300048921 Bacteria 40072
137 Ga0496118_0108521 3300048921 Bacteria 1850
138 Ga0496119_0003573 3300048922 Bacteria 16054
139 Ga0496119_0021769 3300048922 Bacteria 4618
140 Ga0496120_0001984 3300048923 Bacteria 22312
141 Ga0496121_0015923 3300048924 Bacteria 7810
142 Ga0496121_0018928 3300048924 Bacteria 6910
143 Ga0496121_0030662 3300048924 Bacteria 4934
144 Ga0496121_0049003 3300048924 Bacteria 3588
145 Ga0501047_0307132 3300049581 Bacteria 1427
146 Ga0501080_0427501 3300049742 Bacteria 1189
147 Ga0501083_0013517 3300049744 Bacteria 5706
148 Ga0501044_0257185 3300049823 Bacteria 1685
149 nmdc:mga08x19_158055_c1 3300050514 Bacteria 1538
150 Ga0495612_0047991 3300053078 Bacteria 1750
151 Ga0495655_0000001 3300053083 Bacteria 419518
152 Ga0495595_0000107 3300053084 Bacteria 38201
153 Ga0495619_0000222 3300053085 Bacteria 41071
154 Ga0500628_000020 3300053129 Bacteria 81755
155 JGI24740J21852_10006525
156 Ga0068868_100001365
157 Ga0070691_10000001
158 Ga0070661_100000199
159 Ga0070668_100055467
160 Ga0070668_100354815
161 Ga0070675_100000025
162 Ga0070688_100000149
163 Ga0070659_100001957
164 Ga0070667_100102766
165 Ga0070713_100000092
166 Ga0070711_100055059
167 Ga0070678_100792841
168 Ga0070681_10004565
169 Ga0070685_10000024
170 Ga0070679_100000247
171 Ga0070684_100278630
172 Ga0068853_100003511
173 Ga0070672_100000025
174 Ga0070665_100229663
175 Ga0070665_100519365
176 Ga0068857_100157740
177 Ga0068856_100060211
178 Ga0068856_100087212
179 Ga0068852_100000006
180 Ga0068861_100040391
181 Ga0068863_100000181
182 Ga0068860_100002615
183 Ga0081540_1000079
184 Ga0070712_100018780
185 Ga0068865_100000034
186 Ga0075436_100206194
187 Ga0105245_10000135
188 Ga0105245_10000179
189 Ga0105242_10001335
190 Ga0105239_10138901
191 Ga0157378_10445203
192 Ga0157372_10008018
193 Ga0163161_10000021
194 Ga0207707_10011149
195 Ga0207693_10024303
196 Ga0207663_10002676
197 Ga0207649_10000009
198 Ga0207652_10000323
199 Ga0207659_10000033
200 Ga0207687_10000007
201 Ga0207687_10000609
202 Ga0207700_10000007
203 Ga0207690_10007782
204 Ga0207686_10000252
205 Ga0207704_10000059
206 Ga0207691_10000135
207 Ga0207668_10002673
208 Ga0207668_10358419
209 Ga0207639_10002631
210 Ga0207702_10000360
211 Ga0207702_10007336
212 Ga0207641_10000349
213 Ga0207641_10022938
214 Ga0207675_100061011
215 Ga0207698_10000013
216 Ga0207698_10002365
217 Ga0268266_10425241
218 Ga0265337_1000011
219 Ga0265326_10000066
220 Ga0265319_1000020
221 Ga0265322_10000001
222 Ga0265336_10045999
223 Ga0265324_10001193
224 Ga0265332_10026776
225 Ga0265320_10000002
226 Ga0265329_10008884
227 Ga0265331_10003019
228 Ga0265331_10005363
229 Ga0265327_10000011
230 Ga0265314_10001507
231 Ga0466963_0000067
232 Ga0466957_0081302
233 Ga0495592_0000494
234 Ga0495603_0000005
235 Ga0495629_0000145
236 Ga0495629_0001756
237 Ga0495629_0003718
238 Ga0495641_0018923
239 Ga0495641_0093304
240 Ga0495653_0141695
241 Ga0495662_0000421
242 Ga0495662_0003418
243 Ga0495608_0000080
244 Ga0495618_0000008
245 Ga0495628_0002719
246 Ga0495628_0015382
247 Ga0495630_0013541
248 Ga0495640_0051958
249 Ga0495586_0254421
250 Ga0495667_0000047
251 Ga0495634_0000034
252 Ga0495634_0294447
253 Ga0495635_0000034
254 Ga0495588_0000244
255 Ga0495657_0026377
256 Ga0495647_0000017
257 Ga0495658_0004064
258 Ga0495613_0000124
259 Ga0495624_0000354
260 Ga0495624_0014464
261 Ga0495600_0005687
262 Ga0495581_0086257
263 Ga0495604_0000106
264 Ga0495680_0000183
265 Ga0495680_0000447
266 Ga0495680_0009007
267 Ga0495675_0059801
268 Ga0495679_040627
269 Ga0495593_0099661
270 Ga0496102_0000115
271 Ga0496102_0276283
272 Ga0496103_0000008
273 Ga0496104_0000004
274 Ga0496104_0029026
275 Ga0496105_0000001
276 Ga0496105_0048893
277 Ga0496106_0000041
278 Ga0496107_0003806
279 Ga0496108_0044427
280 Ga0496109_0000075
281 Ga0496109_0122698
282 Ga0496110_0000240
283 Ga0496111_0008796
284 Ga0496114_0168103
285 Ga0496115_0000003
286 Ga0496115_0000119
287 Ga0496115_0008333
288 Ga0496116_0001163
289 Ga0496117_0007722
290 Ga0496118_0001190
291 Ga0496118_0108521
292 Ga0496119_0003573
293 Ga0496119_0021769
294 Ga0496120_0001984
295 Ga0496121_0015923
296 Ga0496121_0018928
297 Ga0496121_0030662
298 Ga0496121_0049003
299 Ga0501047_0307132
300 Ga0501080_0427501
301 Ga0501083_0013517
302 Ga0501044_0257185
303 nmdc:mga08x19_158055_c1
304 Ga0495612_0047991
305 Ga0495655_0000001
306 Ga0495595_0000107
307 Ga0495619_0000222
308 Ga0500628_000020

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07498

Rho_N

Rho termination factor, N-terminal domain

5

40

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
5jji-assembly1.cif.gz_F rho transcription termination factor bound to ru7 and 6 adp-bef3 molecules 0.8486 96 227
5jjk-assembly1.cif.gz_F rho transcription termination factor bound to ra7 and 6 adp-bef3 molecules 0.8304 96 227
6xav-assembly1.cif.gz_B cryoem structure of e. coli rho-dependent transcription pre-termination complex bound with nusg 0.8221 95 222
6duq-assembly1.cif.gz_G structure of a rho-nusg kow domain complex 0.8213 96 227
7oqh-assembly1.cif.gz_A cryoem structure of the transcription termination factor rho from mycobacterium tuberculosis 0.8193 87 224
ID Description Score Start End Superfamily
2a8vA01 Mainly Alpha;Orthogonal Bundle;Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1; 0.9139 1 38 1.10.720.10
1a8vB01 Mainly Alpha;Orthogonal Bundle;Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1; 0.8892 1 38 1.10.720.10
2ht1B02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.804 87 222 3.40.50.300
af_P0AG30_130_419_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7792 96 227 3.40.50.300
2a8vA01 Mainly Alpha;Orthogonal Bundle;Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1; 0.7417 1 38 1.10.720.10
ID Description Score Start End GO Terms
AF-A0A7C7VYA4-F1-model_v4 deleted 0.8538 96 227
AF-A0A0P7X3S9-F1-model_v4 Transcription termination factor Rho (EC 3.6.4.-) (ATP-dependent helicase Rho) 0.8504 96 222 GO:0003723
GO:0004386
GO:0005524
GO:0006353
GO:0008186
GO:0016887
AF-A0A1T4KZJ5-F1-model_v4 Transcription termination factor Rho (EC 3.6.4.-) (ATP-dependent helicase Rho) 0.8484 96 226 GO:0003723
GO:0004386
GO:0005524
GO:0006353
GO:0008186
GO:0016887
AF-A0A2U3QL54-F1-model_v4 Transcription termination factor Rho (EC 3.6.4.-) (ATP-dependent helicase Rho) 0.8467 96 227 GO:0003723
GO:0004386
GO:0005524
GO:0006353
GO:0008186
GO:0016887
AF-A0A7X8UNG2-F1-model_v4 Transcription termination factor Rho (EC 3.6.4.-) (ATP-dependent helicase Rho) 0.8452 96 227 GO:0003723
GO:0004386
GO:0005524
GO:0006353
GO:0008186
GO:0016887

Map