F218520

General Info

Members Datasets Scaffolds Average Seq Length
154 100 308 230

Family's Representative Sequence

Representative Sequence 3300003316|rootH1_10147956|rootH1_101479562
Length 240
Sequence MGMLIKCIIVEDEPLARERTQNYIEKLSFLHLSAVFDNGLDALVYLRTYPLDIDLVFLDINMGSFSGIRLLEAGVLSSQVIIITAYDQYALKGYELNVTDYLLKPYTFERFLQAVEKVRNNLSRHTLLPVEKKFIFIRTEHRLEKLMLSDVLYIEGMRDYRKIHTAGKPIMTLQTFGELESEIHPGIVCRVHKSFMVALDKIESIERDQIRIRDRMIPISDTYKKAFYEWINHPAANPRK

Samples

Sample ID Description Type Environment
1 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
2 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
3 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
4 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
11 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
17 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
18 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
19 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
20 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
21 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
23 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
24 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
28 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
29 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
30 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
31 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
32 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
33 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
34 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
35 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
36 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
37 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
38 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
39 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
40 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
41 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
42 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
59 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
60 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
61 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
62 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
63 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
64 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
65 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
66 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
67 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
68 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
69 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
70 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
71 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
72 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
73 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
74 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
75 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
76 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
77 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
78 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
79 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
80 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
81 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
82 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
83 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
84 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
85 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
86 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
87 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
88 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
89 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
90 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
91 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
92 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
93 3300053101 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 endosphere Metagenome Endosphere
94 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
95 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
96 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
97 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
98 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
99 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
100 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.7
Metatranscriptomes 0
Isolates 1.3

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.44
Nodule 0
Rhizoplane 0
Rhizosphere 74.68
Stem 0
Stem Tuber 0
Unclassified 10.39

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10147956 3300003316 Bacteria 3741
2 LJQas_1000014 3300000549 Bacteria 26072
3 JGI25154J39366_1000227 3300002738 Bacteria 37673
4 JGI25153J46596_10024467 3300003215 Bacteria 2177
5 rootH1_10185963 3300003316 Bacteria 1171
6 rootH2_10034071 3300003320 Bacteria 8936
7 rootH2_10037444 3300003320 Bacteria 4347
8 rootL2_10014094 3300003322 Bacteria 7623
9 rootL2_10024218 3300003322 Bacteria 13707
10 rootL2_10046447 3300003322 Unclassified 3202
11 rootL2_10260658 3300003322 Bacteria 3343
12 rootH1_10021842 3300003323 Bacteria 49730
13 rootH1_10078105 3300003323 Bacteria 3236
14 rootH1_10105977 3300003323 Bacteria 7399
15 rootH1_10325718 3300003323 Unclassified 1089
16 Ga0070689_100034992 3300005340 Bacteria 3835
17 Ga0070671_100686556 3300005355 Bacteria 888
18 Ga0070673_100229618 3300005364 Bacteria 1610
19 Ga0070685_10405170 3300005466 Bacteria 945
20 Ga0070679_100054776 3300005530 Bacteria 3972
21 Ga0068853_100014576 3300005539 Bacteria 6444
22 Ga0068853_100108202 3300005539 Bacteria 2466
23 Ga0068853_100715174 3300005539 Bacteria 956
24 Ga0070665_100000041 3300005548 Bacteria 297849
25 Ga0068855_100047291 3300005563 Bacteria 5083
26 Ga0068857_100088257 3300005577 Bacteria 2774
27 Ga0068852_100276904 3300005616 Bacteria 1616
28 Ga0068851_10141994 3300005834 Bacteria 1307
29 Ga0068858_100493730 3300005842 Bacteria 1182
30 Ga0075366_10023201 3300006195 Bacteria 3614
31 Ga0097621_100083403 3300006237 Bacteria 2663
32 Ga0097621_100747210 3300006237 Bacteria 903
33 Ga0068871_100074002 3300006358 Bacteria 2809
34 Ga0075428_100153488 3300006844 Unclassified 2501
35 Ga0075431_100839557 3300006847 Unclassified 890
36 Ga0105240_10000998 3300009093 Bacteria 50528
37 Ga0105240_10022082 3300009093 Bacteria 8446
38 Ga0105240_10199348 3300009093 Bacteria 2347
39 Ga0114129_11525018 3300009147 Unclassified 820
40 Ga0105241_10253254 3300009174 Bacteria 1494
41 Ga0105237_10000052 3300009545 Bacteria 160459
42 Ga0105238_10015174 3300009551 Bacteria 7800
43 Ga0105239_10002670 3300010375 Bacteria 22480
44 Ga0105239_10016760 3300010375 Bacteria 8100
45 Ga0105239_10107579 3300010375 Unclassified 3090
46 Ga0157371_10000232 3300013102 Bacteria 79717
47 Ga0157371_10041755 3300013102 Bacteria 3272
48 Ga0157369_10568321 3300013105 Bacteria 1171
49 Ga0157374_10000002 3300013296 Bacteria 1054226
50 Ga0157374_10040820 3300013296 Bacteria 4274
51 Ga0157378_10062952 3300013297 Bacteria 3314
52 Ga0157378_10072162 3300013297 Unclassified 3102
53 Ga0157378_10718855 3300013297 Unclassified 1019
54 Ga0163162_10163469 3300013306 Bacteria 2349
55 Ga0163162_11384091 3300013306 Bacteria 800
56 Ga0157372_10007221 3300013307 Bacteria 11828
57 Ga0157372_10047961 3300013307 Bacteria 4747
58 Ga0157372_10050731 3300013307 Unclassified 4615
59 Ga0157375_10168190 3300013308 Bacteria 2338
60 Ga0157376_10009104 3300014969 Bacteria 7197
61 Ga0209646_1000009 3300025246 Bacteria 652154
62 Ga0209026_1000188 3300025250 Bacteria 90347
63 Ga0207426_1001723 3300025302 Bacteria 16741
64 Ga0207426_1047140 3300025302 Bacteria 1302
65 Ga0207647_10029163 3300025904 Bacteria 3574
66 Ga0207654_10286243 3300025911 Bacteria 1116
67 Ga0207654_10375533 3300025911 Bacteria 984
68 Ga0207695_10002246 3300025913 Bacteria 28947
69 Ga0207695_10038818 3300025913 Bacteria 5122
70 Ga0207695_10082762 3300025913 Bacteria 3243
71 Ga0207671_10000974 3300025914 Bacteria 35495
72 Ga0207671_10002423 3300025914 Bacteria 19966
73 Ga0207652_10060718 3300025921 Bacteria 3262
74 Ga0207644_10220954 3300025931 Bacteria 1502
75 Ga0207667_10044431 3300025949 Unclassified 4707
76 Ga0207651_10401323 3300025960 Bacteria 1166
77 Ga0207640_10557127 3300025981 Bacteria 964
78 Ga0207677_10128474 3300026023 Bacteria 1919
79 Ga0207703_10092030 3300026035 Unclassified 2552
80 Ga0207639_10017191 3300026041 Bacteria 5126
81 Ga0207639_10087605 3300026041 Bacteria 2482
82 Ga0207639_10668527 3300026041 Bacteria 962
83 Ga0207674_10097890 3300026116 Bacteria 2917
84 Ga0207683_10550673 3300026121 Unclassified 1066
85 Ga0207698_10665462 3300026142 Bacteria 1033
86 Ga0268266_10000014 3300028379 Bacteria 644033
87 Ga0307515_10000009 3300028794 Bacteria 653206
88 Ga0307515_10000193 3300028794 Bacteria 148602
89 Ga0265327_10000101 3300031251 Bacteria 188671
90 Ga0265327_10000526 3300031251 Bacteria 66051
91 Ga0265327_10005280 3300031251 Bacteria 10868
92 Ga0265327_10014641 3300031251 Bacteria 5120
93 Ga0265327_10104420 3300031251 Bacteria 1362
94 Ga0307509_10158432 3300031507 Bacteria 2166
95 Ga0307508_10007856 3300031616 Bacteria 9904
96 Ga0307514_10052091 3300031649 Bacteria 3167
97 Ga0265314_10056600 3300031711 Bacteria 2698
98 Ga0307518_10324097 3300031838 Bacteria 918
99 Ga0307412_10062940 3300031911 Unclassified 2501
100 Ga0307416_100380226 3300032002 Bacteria 1442
101 Ga0373943_0029519 3300035170 Bacteria 2591
102 Ga0316584_0075957 3300036712 Bacteria 2518
103 Ga0395900_0126661 3300037418 Bacteria 2620
104 Ga0395898_0534299 3300037466 Bacteria 1114
105 Ga0400483_141706 3300039062 Bacteria 1171
106 Ga0400483_215767 3300039062 Bacteria 1215
107 Ga0451849_0259220 3300041505 Bacteria 1265
108 Ga0439457_042976 3300042014 Bacteria 1008
109 Ga0451577_0000140 3300042876 Bacteria 161646
110 Ga0451577_0043069 3300042876 Bacteria 4045
111 Ga0451577_0112746 3300042876 Bacteria 2434
112 Ga0451577_1050308 3300042876 Bacteria 730
113 Ga0453683_0054471 3300044673 Bacteria 2503
114 Ga0453683_0134456 3300044673 Bacteria 1559
115 Ga0453683_0494859 3300044673 Bacteria 793
116 Ga0466961_0024102 3300044693 Bacteria 3916
117 Ga0453684_0000084 3300044712 Bacteria 398306
118 Ga0453684_0001324 3300044712 Bacteria 73175
119 Ga0453684_0011012 3300044712 Bacteria 15279
120 Ga0453684_0021131 3300044712 Bacteria 9752
121 Ga0453684_0023358 3300044712 Bacteria 9116
122 Ga0453684_0024804 3300044712 Bacteria 8740
123 Ga0453684_0032728 3300044712 Bacteria 7266
124 Ga0466957_0091388 3300044842 Bacteria 1908
125 Ga0466959_0003273 3300045049 Bacteria 10554
126 Ga0466959_0412094 3300045049 Bacteria 918
127 Ga0451576_0000002 3300045051 Bacteria 1670975
128 Ga0451576_0000176 3300045051 Bacteria 161951
129 Ga0451576_0003489 3300045051 Bacteria 21517
130 Ga0451576_0024793 3300045051 Bacteria 6473
131 Ga0451576_0438282 3300045051 Bacteria 1371
132 Ga0466958_0050568 3300045836 Bacteria 2516
133 Ga0495638_0339087 3300046460 Bacteria 797
134 Ga0495651_0137322 3300046462 Bacteria 1777
135 Ga0495668_0004336 3300046616 Bacteria 10137
136 Ga0495661_0000996 3300046665 Bacteria 25550
137 Ga0495661_0001258 3300046665 Bacteria 21865
138 Ga0495683_0197494 3300047323 Bacteria 909
139 Ga0495687_000144 3300047443 Bacteria 108217
140 Ga0495686_0041786 3300047472 Bacteria 2918
141 Ga0501243_045582 3300049675 Unclassified 780
142 nmdc:mga06r32_839630_c1 3300050510 Bacteria 877
143 Ga0500635_0177104 3300053080 Unclassified 823
144 Ga0500583_0000290 3300053092 Bacteria 17375
145 Ga0500583_0170645 3300053092 Bacteria 1083
146 Ga0500553_106368 3300053101 Unclassified 1193
147 Ga0500588_0000643 3300053146 Bacteria 5807
148 Ga0500622_0000004 3300053156 Bacteria 557587
149 Ga0500622_0000005 3300053156 Bacteria 502443
150 Ga0500627_0085784 3300053158 Bacteria 1406
151 Ga0500633_0002449 3300053160 Bacteria 3823
152 Ga0466962_0046053 3300061719 Bacteria 2085
153 2884794274 2884791551 Bacteria 8511252
154 8003156072 8003151029 Bacteria 8187759
155 rootH1_10147956
156 LJQas_1000014
157 JGI25154J39366_1000227
158 JGI25153J46596_10024467
159 rootH1_10185963
160 rootH2_10034071
161 rootH2_10037444
162 rootL2_10014094
163 rootL2_10024218
164 rootL2_10046447
165 rootL2_10260658
166 rootH1_10021842
167 rootH1_10078105
168 rootH1_10105977
169 rootH1_10325718
170 Ga0070689_100034992
171 Ga0070671_100686556
172 Ga0070673_100229618
173 Ga0070685_10405170
174 Ga0070679_100054776
175 Ga0068853_100014576
176 Ga0068853_100108202
177 Ga0068853_100715174
178 Ga0070665_100000041
179 Ga0068855_100047291
180 Ga0068857_100088257
181 Ga0068852_100276904
182 Ga0068851_10141994
183 Ga0068858_100493730
184 Ga0075366_10023201
185 Ga0097621_100083403
186 Ga0097621_100747210
187 Ga0068871_100074002
188 Ga0075428_100153488
189 Ga0075431_100839557
190 Ga0105240_10000998
191 Ga0105240_10022082
192 Ga0105240_10199348
193 Ga0114129_11525018
194 Ga0105241_10253254
195 Ga0105237_10000052
196 Ga0105238_10015174
197 Ga0105239_10002670
198 Ga0105239_10016760
199 Ga0105239_10107579
200 Ga0157371_10000232
201 Ga0157371_10041755
202 Ga0157369_10568321
203 Ga0157374_10000002
204 Ga0157374_10040820
205 Ga0157378_10062952
206 Ga0157378_10072162
207 Ga0157378_10718855
208 Ga0163162_10163469
209 Ga0163162_11384091
210 Ga0157372_10007221
211 Ga0157372_10047961
212 Ga0157372_10050731
213 Ga0157375_10168190
214 Ga0157376_10009104
215 Ga0209646_1000009
216 Ga0209026_1000188
217 Ga0207426_1001723
218 Ga0207426_1047140
219 Ga0207647_10029163
220 Ga0207654_10286243
221 Ga0207654_10375533
222 Ga0207695_10002246
223 Ga0207695_10038818
224 Ga0207695_10082762
225 Ga0207671_10000974
226 Ga0207671_10002423
227 Ga0207652_10060718
228 Ga0207644_10220954
229 Ga0207667_10044431
230 Ga0207651_10401323
231 Ga0207640_10557127
232 Ga0207677_10128474
233 Ga0207703_10092030
234 Ga0207639_10017191
235 Ga0207639_10087605
236 Ga0207639_10668527
237 Ga0207674_10097890
238 Ga0207683_10550673
239 Ga0207698_10665462
240 Ga0268266_10000014
241 Ga0307515_10000009
242 Ga0307515_10000193
243 Ga0265327_10000101
244 Ga0265327_10000526
245 Ga0265327_10005280
246 Ga0265327_10014641
247 Ga0265327_10104420
248 Ga0307509_10158432
249 Ga0307508_10007856
250 Ga0307514_10052091
251 Ga0265314_10056600
252 Ga0307518_10324097
253 Ga0307412_10062940
254 Ga0307416_100380226
255 Ga0373943_0029519
256 Ga0316584_0075957
257 Ga0395900_0126661
258 Ga0395898_0534299
259 Ga0400483_141706
260 Ga0400483_215767
261 Ga0451849_0259220
262 Ga0439457_042976
263 Ga0451577_0000140
264 Ga0451577_0043069
265 Ga0451577_0112746
266 Ga0451577_1050308
267 Ga0453683_0054471
268 Ga0453683_0134456
269 Ga0453683_0494859
270 Ga0466961_0024102
271 Ga0453684_0000084
272 Ga0453684_0001324
273 Ga0453684_0011012
274 Ga0453684_0021131
275 Ga0453684_0023358
276 Ga0453684_0024804
277 Ga0453684_0032728
278 Ga0466957_0091388
279 Ga0466959_0003273
280 Ga0466959_0412094
281 Ga0451576_0000002
282 Ga0451576_0000176
283 Ga0451576_0003489
284 Ga0451576_0024793
285 Ga0451576_0438282
286 Ga0466958_0050568
287 Ga0495638_0339087
288 Ga0495651_0137322
289 Ga0495668_0004336
290 Ga0495661_0000996
291 Ga0495661_0001258
292 Ga0495683_0197494
293 Ga0495687_000144
294 Ga0495686_0041786
295 Ga0501243_045582
296 nmdc:mga06r32_839630_c1
297 Ga0500635_0177104
298 Ga0500583_0000290
299 Ga0500583_0170645
300 Ga0500553_106368
301 Ga0500588_0000643
302 Ga0500622_0000004
303 Ga0500622_0000005
304 Ga0500627_0085784
305 Ga0500633_0002449
306 Ga0466962_0046053
307 2884794274
308 8003156072

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04397

LytTR

LytTr DNA-binding domain

141

232

0.94

PF00072

Response_reg

Response regulator receiver domain

7

116

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
2qv0-assembly1.cif.gz_A crystal structure of the response regulatory domain of protein mrke from klebsiella pneumoniae 0.9113 4 116
5f64-assembly2.cif.gz_C putative positive transcription regulator (sensor evgs) from shigella flexneri 0.9064 3 117
3ffw-assembly1.cif.gz_A crystal structure of chey triple mutant f14q, n59k, e89y complexed with bef3- and mn2+ 0.9062 2 116
3oo1-assembly2.cif.gz_B structure of e. coli chey mutant a113p in the absence of sulfate 0.9061 2 116
3f6c-assembly3.cif.gz_B crystal structure of n-terminal domain of positive transcription regulator evga from escherichia coli 0.9047 2 117
ID Description Score Start End Superfamily
af_P60611_135_244_2.40.50.1020 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);LytTr DNA-binding domain 0.9195 130 227 2.40.50.1020
2qv0B00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9091 4 116 3.40.50.2300
af_P0AFT5_1_126_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9041 3 120 3.40.50.2300
3f6cA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.903 2 117 3.40.50.2300
af_Q2FX97_3_207_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9026 5 116 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A4Q5YEC4-F1-model_v4 Response regulator 0.9665 4 116 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A1J5SZP7-F1-model_v4 LytTr DNA-binding domain protein 0.9628 129 230 GO:0000156
GO:0003677
AF-A0A519UEC9-F1-model_v4 Response regulator 0.9623 3 116 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A0F8ZVN2-F1-model_v4 HTH LytTR-type domain-containing protein 0.962 145 230 GO:0000156
GO:0003677
AF-A0A4Q8QFW8-F1-model_v4 Response regulator 0.9547 1 116 GO:0000160

Map