F220973

General Info

Members Datasets Scaffolds Average Seq Length
154 118 308 639

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8056037122|8056040120
Length 717
Sequence TASAALETLSRVFGYDSFRGDQAEVIDHVIGGGDAVVLMPTGAGKSLCYQVPSLVRHGTGVVVSPLIALMHDQVEAMKAVGVKAAFLNSTQDPTERAGVERDYLAGELDLLYVAPERLSSESTKRFLESGDIALFAIDEAHCVSQWGHDFRPDYLALAELAERWPDVPRIALTATATEATHKEITQRLSMGEAKHFVASFDRPNIQYRIDPKVEVRKQLLSFIRSEHSGDAGIVYAMSRNTVEKTAQFLAANGVDAMPYHAGLDSRLRAQTQARFLRDEGVVIVATIAFGMGIDKPDVRFVAHIDLPKSVEGYYQETGRAGRDGLPSTAWMAYGLNDVVQQRRMIDESPGDLAHRRRLSAHLDAMLALCETVSCRRQNLLGYFGQKSEPCGNCDTCLTPPESWDGTVAAQKLLSTVVRLERERNQRFGAGHLVDILRGKRTERVGQWKHDELSTWGIGTELSEQQWRGVVRQLLAQGLLAVNDDGYGTLVITADSAAVLSGSRAVQLRKEAERVATRGGSGSGSGSSRGGSRSAAKDDLGEADAALFEELRAWRAATAKQQGVPAYVVFHDATLAAVASLRPGSVSALEGIAGIGDRKREAYGAGLVEVVTSGAFDPSSLPAPAEGGADDAAAGAGSGSGSAARASGGRTASGRGRSTSGARRDGNRRPGGARFSPASDSGPDSPPYDDAPSFDDVPPDAYYEAPPYDDADAPPLYP

Samples

Sample ID Description Type Environment
1 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
4 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
5 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
6 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
7 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
8 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
9 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
10 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
11 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
12 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
13 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
14 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
15 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
16 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
17 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
18 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
19 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
20 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
21 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
22 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
23 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
24 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
25 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
26 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
27 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
28 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
32 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
33 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
34 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
35 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
36 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
37 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
38 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
39 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
40 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
41 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
42 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
43 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
44 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
45 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
46 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
47 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
48 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
49 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
50 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
51 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
52 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
53 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
54 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
55 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
56 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
57 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
58 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
59 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
60 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
61 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
62 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
63 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
64 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
65 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
72 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
73 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
74 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
75 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
77 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
78 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
79 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
80 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
81 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
82 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
83 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
84 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
85 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere
86 2643221549 Agromyces sp. Root1464 Isolate Unclassified
87 2643221572 Leifsonia sp. Root60 Isolate Unclassified
88 2643221616 Leifsonia sp. Root227 Isolate Unclassified
89 2643221619 Agromyces sp. Root81 Isolate Unclassified
90 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
91 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
92 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
93 2643221711 Terrabacter sp. Root85 Isolate Unclassified
94 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
95 2775506925 Saccharopolyspora phatthalungensis NRRL B-24798 Isolate Rhizosphere
96 2808606372 Agromyces sp. 23-23 Isolate Unclassified
97 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
98 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
99 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
100 2848551377 Brachybacterium saurashtrense DSM 23186 Isolate Unclassified
101 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
102 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
103 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
104 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
105 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
106 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
107 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
108 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
109 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
110 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
111 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
112 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
113 2928153084 Leifsonia sp. 563 Isolate Unclassified
114 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
115 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
116 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
117 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere
118 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.62
Metatranscriptomes 1.3
Isolates 22.08

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.83
Nodule 0
Rhizoplane 3.9
Rhizosphere 58.44
Stem 0
Stem Tuber 0.65
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10018464 3300001979 Bacteria 2472
2 JGI24735J21928_10000910 3300002067 Bacteria 10554
3 JGI25164J39214_1000743 3300002772 Bacteria 12143
4 JGI25165J46597_1000055 3300003214 Bacteria 224187
5 Ga0006562J51391_1058126 3300003578 Bacteria 12450
6 Ga0006562J51391_1058127 3300003578 Bacteria 12505
7 Ga0055539_1000019 3300003752 Bacteria 341727
8 Ga0055533_1000023 3300003756 Bacteria 341727
9 Ga0055525_1000088 3300003759 Bacteria 143732
10 Ga0055527_1000025 3300003760 Bacteria 195817
11 Ga0055542_1000048 3300003762 Bacteria 195800
12 Ga0055529_1000057 3300003763 Bacteria 195807
13 Ga0070658_10020436 3300005327 Bacteria 5307
14 Ga0075365_10083005 3300006038 Bacteria 2174
15 Ga0075431_100003182 3300006847 Bacteria 15870
16 Ga0157369_10000311 3300013105 Bacteria 65381
17 Ga0157369_10049982 3300013105 Bacteria 4530
18 Ga0157369_10050057 3300013105 Bacteria 4527
19 Ga0157369_10109750 3300013105 Bacteria 2933
20 Ga0157380_10004101 3300014326 Bacteria 10064
21 Ga0209566_100031 3300025225 Bacteria 341555
22 Ga0209674_100001 3300025226 Bacteria 4013750
23 Ga0209672_100011 3300025228 Bacteria 856297
24 Ga0209147_101101 3300025229 Bacteria 11262
25 Ga0209563_100001 3300025230 Bacteria 4013775
26 Ga0209563_100155 3300025230 Bacteria 64311
27 Ga0207427_100028 3300025231 Bacteria 388949
28 Ga0209437_101158 3300025233 Bacteria 7853
29 Ga0209677_100001 3300025253 Bacteria 4013787
30 Ga0209148_1000023 3300025254 Bacteria 680511
31 Ga0209233_1000001 3300025261 Bacteria 2992747
32 Ga0209455_1000023 3300025272 Bacteria 680449
33 Ga0207670_10086983 3300025936 Bacteria 2200
34 Ga0207668_10010679 3300025972 Bacteria 5556
35 Ga0207678_10000089 3300026067 Bacteria 75976
36 Ga0316579_10003219 3300031691 Bacteria 6320
37 Ga0316576_10003280 3300031727 Bacteria 9446
38 Ga0316576_10074277 3300031727 Bacteria 2513
39 Ga0307507_10038348 3300033179 Bacteria 4860
40 Ga0316584_0023906 3300036712 Bacteria 4466
41 Ga0395899_0017414 3300037312 Bacteria 5474
42 Ga0395899_0018003 3300037312 Bacteria 5376
43 Ga0395900_0018042 3300037418 Bacteria 7204
44 Ga0395900_0074054 3300037418 Bacteria 3502
45 Ga0395900_0122622 3300037418 Bacteria 2666
46 Ga0395898_0000100 3300037466 Bacteria 226446
47 Ga0316581_0000060 3300037588 Bacteria 12942
48 Ga0466972_0006819 3300044658 Bacteria 5732
49 Ga0466965_0000017 3300044683 Bacteria 72634
50 Ga0466966_0084795 3300044684 Bacteria 1970
51 Ga0466970_0010835 3300044765 Bacteria 4636
52 Ga0466957_0028283 3300044842 Bacteria 3337
53 Ga0495651_0001036 3300046462 Bacteria 21477
54 Ga0495652_0000399 3300046529 Bacteria 50595
55 Ga0495645_0002370 3300046543 Bacteria 12777
56 Ga0495600_0018391 3300046809 Bacteria 4451
57 Ga0496101_0021493 3300048904 Bacteria 4434
58 Ga0496101_0024714 3300048904 Bacteria 4161
59 Ga0496103_0029861 3300048906 Bacteria 3315
60 Ga0496107_0044693 3300048910 Bacteria 3185
61 Ga0496113_0076946 3300048916 Bacteria 2550
62 Ga0496115_0107251 3300048918 Bacteria 2293
63 Ga0496117_0000034 3300048920 Bacteria 328334
64 Ga0496117_0009787 3300048920 Bacteria 8841
65 Ga0496117_0046365 3300048920 Bacteria 3127
66 Ga0496121_0069310 3300048924 Bacteria 2847
67 Ga0496122_0001726 3300048925 Bacteria 33875
68 Ga0496122_0002771 3300048925 Bacteria 24152
69 Ga0496125_0000085 3300048928 Bacteria 218570
70 Ga0496126_0004570 3300048929 Bacteria 16426
71 Ga0501031_0012678 3300049568 Bacteria 5505
72 Ga0501032_0018758 3300049569 Bacteria 4842
73 Ga0501032_0029264 3300049569 Bacteria 3782
74 Ga0501033_0007551 3300049570 Bacteria 8460
75 Ga0501033_0007715 3300049570 Bacteria 8346
76 Ga0501033_0017805 3300049570 Bacteria 5365
77 Ga0501033_0049365 3300049570 Bacteria 3123
78 Ga0501034_0019122 3300049571 Bacteria 7014
79 Ga0501034_0020268 3300049571 Bacteria 6790
80 Ga0501034_0023363 3300049571 Bacteria 6300
81 Ga0501034_0073601 3300049571 Bacteria 3425
82 Ga0501036_0001076 3300049572 Bacteria 20701
83 Ga0501036_0023371 3300049572 Bacteria 5207
84 Ga0501036_0025627 3300049572 Bacteria 4976
85 Ga0501037_0004437 3300049573 Bacteria 10193
86 Ga0501037_0022485 3300049573 Bacteria 4664
87 Ga0501037_0046359 3300049573 Bacteria 3188
88 Ga0501038_0019066 3300049574 Bacteria 6186
89 Ga0501038_0072367 3300049574 Bacteria 2921
90 Ga0501039_0001948 3300049575 Bacteria 15299
91 Ga0501042_0006353 3300049578 Bacteria 7666
92 Ga0501043_0005976 3300049579 Bacteria 9783
93 Ga0501043_0041611 3300049579 Bacteria 3610
94 Ga0501046_0011558 3300049580 Bacteria 7549
95 Ga0501046_0024508 3300049580 Bacteria 4947
96 Ga0501047_0016794 3300049581 Bacteria 6994
97 Ga0501047_0032605 3300049581 Bacteria 5029
98 Ga0501047_0039576 3300049581 Bacteria 4560
99 Ga0501048_0026832 3300049582 Bacteria 4192
100 Ga0501068_0013125 3300049584 Bacteria 4709
101 Ga0501070_0000065 3300049586 Bacteria 88506
102 Ga0501070_0039905 3300049586 Bacteria 3915
103 Ga0501073_0037656 3300049589 Bacteria 3432
104 Ga0501073_0049214 3300049589 Bacteria 2956
105 Ga0501083_0000026 3300049744 Bacteria 119076
106 Ga0501083_0018167 3300049744 Bacteria 4901
107 Ga0501035_0002853 3300049822 Bacteria 16696
108 Ga0501035_0036362 3300049822 Bacteria 4463
109 Ga0501044_0011581 3300049823 Bacteria 9559
110 Ga0501044_0100068 3300049823 Bacteria 2917
111 Ga0501045_0003745 3300049824 Bacteria 10461
112 nmdc:mga06r32_945_c1 3300050510 Bacteria 25853
113 Ga0500635_0000002 3300053080 Bacteria 265613
114 Ga0500556_0000059 3300053104 Bacteria 112837
115 Ga0500559_0000129 3300053136 Bacteria 58778
116 Ga0500568_0000012 3300053139 Bacteria 225711
117 Ga0500568_0000535 3300053139 Bacteria 28028
118 Ga0500573_0000052 3300053140 Bacteria 94687
119 Ga0500573_0046251 3300053140 Bacteria 2507
120 Ga0500616_0000152 3300053153 Bacteria 116194
121 8056040120 8056037122 Bacteria 3854319
122 2643768768 2643221549 Bacteria 4042819
123 2643876602 2643221572 Bacteria 3614809
124 2644097969 2643221616 Bacteria 4066575
125 2644112214 2643221619 Bacteria 4158469
126 2644182151 2643221632 Bacteria 3406696
127 2644383657 2643221669 Bacteria 3611286
128 2644432810 2643221677 Bacteria 7584031
129 2644611284 2643221711 Bacteria 4865335
130 2723643315 2721755702 Bacteria 4373124
131 2776377389 2775506925 Bacteria 7237746
132 2808900847 2808606372 Bacteria 4649509
133 2812325351 2811994872 Bacteria 4121241
134 2844843582 2844841374 Bacteria 3917147
135 2844854061 2844852863 Bacteria 3849151
136 2848552654 2848551377 Bacteria 3720646
137 2857733455 2857729791 Bacteria 4040535
138 2857738824 2857737099 Bacteria 3104305
139 2862993770 2862993130 Bacteria 3860849
140 2863073310 2863067949 Bacteria 8541735
141 2866555030 2866552031 Bacteria 5824618
142 2884766754 2884763398 Bacteria 4091164
143 2895660809 2895660088 Bacteria 3782833
144 2917744666 2917736166 Bacteria 9690793
145 2919055569 2919055335 Bacteria 3875751
146 2919445395 2919443155 Bacteria 4072969
147 2919525706 2919523602 Bacteria 3788128
148 2928121662 2928121344 Bacteria 3972376
149 2928153715 2928153084 Bacteria 4020257
150 2935411940 2935409751 Bacteria 4179611
151 2966927394 2966924647 Bacteria 3268643
152 8046353936 8046352972 Bacteria 3613806
153 8056209620 8056207758 Bacteria 8639239
154 8057347119 8057345674 Bacteria 4160394
155 JGI24740J21852_10018464
156 JGI24735J21928_10000910
157 JGI25164J39214_1000743
158 JGI25165J46597_1000055
159 Ga0006562J51391_1058126
160 Ga0006562J51391_1058127
161 Ga0055539_1000019
162 Ga0055533_1000023
163 Ga0055525_1000088
164 Ga0055527_1000025
165 Ga0055542_1000048
166 Ga0055529_1000057
167 Ga0070658_10020436
168 Ga0075365_10083005
169 Ga0075431_100003182
170 Ga0157369_10000311
171 Ga0157369_10049982
172 Ga0157369_10050057
173 Ga0157369_10109750
174 Ga0157380_10004101
175 Ga0209566_100031
176 Ga0209674_100001
177 Ga0209672_100011
178 Ga0209147_101101
179 Ga0209563_100001
180 Ga0209563_100155
181 Ga0207427_100028
182 Ga0209437_101158
183 Ga0209677_100001
184 Ga0209148_1000023
185 Ga0209233_1000001
186 Ga0209455_1000023
187 Ga0207670_10086983
188 Ga0207668_10010679
189 Ga0207678_10000089
190 Ga0316579_10003219
191 Ga0316576_10003280
192 Ga0316576_10074277
193 Ga0307507_10038348
194 Ga0316584_0023906
195 Ga0395899_0017414
196 Ga0395899_0018003
197 Ga0395900_0018042
198 Ga0395900_0074054
199 Ga0395900_0122622
200 Ga0395898_0000100
201 Ga0316581_0000060
202 Ga0466972_0006819
203 Ga0466965_0000017
204 Ga0466966_0084795
205 Ga0466970_0010835
206 Ga0466957_0028283
207 Ga0495651_0001036
208 Ga0495652_0000399
209 Ga0495645_0002370
210 Ga0495600_0018391
211 Ga0496101_0021493
212 Ga0496101_0024714
213 Ga0496103_0029861
214 Ga0496107_0044693
215 Ga0496113_0076946
216 Ga0496115_0107251
217 Ga0496117_0000034
218 Ga0496117_0009787
219 Ga0496117_0046365
220 Ga0496121_0069310
221 Ga0496122_0001726
222 Ga0496122_0002771
223 Ga0496125_0000085
224 Ga0496126_0004570
225 Ga0501031_0012678
226 Ga0501032_0018758
227 Ga0501032_0029264
228 Ga0501033_0007551
229 Ga0501033_0007715
230 Ga0501033_0017805
231 Ga0501033_0049365
232 Ga0501034_0019122
233 Ga0501034_0020268
234 Ga0501034_0023363
235 Ga0501034_0073601
236 Ga0501036_0001076
237 Ga0501036_0023371
238 Ga0501036_0025627
239 Ga0501037_0004437
240 Ga0501037_0022485
241 Ga0501037_0046359
242 Ga0501038_0019066
243 Ga0501038_0072367
244 Ga0501039_0001948
245 Ga0501042_0006353
246 Ga0501043_0005976
247 Ga0501043_0041611
248 Ga0501046_0011558
249 Ga0501046_0024508
250 Ga0501047_0016794
251 Ga0501047_0032605
252 Ga0501047_0039576
253 Ga0501048_0026832
254 Ga0501068_0013125
255 Ga0501070_0000065
256 Ga0501070_0039905
257 Ga0501073_0037656
258 Ga0501073_0049214
259 Ga0501083_0000026
260 Ga0501083_0018167
261 Ga0501035_0002853
262 Ga0501035_0036362
263 Ga0501044_0011581
264 Ga0501044_0100068
265 Ga0501045_0003745
266 nmdc:mga06r32_945_c1
267 Ga0500635_0000002
268 Ga0500556_0000059
269 Ga0500559_0000129
270 Ga0500568_0000012
271 Ga0500568_0000535
272 Ga0500573_0000052
273 Ga0500573_0046251
274 Ga0500616_0000152
275 8056040120
276 2643768768
277 2643876602
278 2644097969
279 2644112214
280 2644182151
281 2644383657
282 2644432810
283 2644611284
284 2723643315
285 2776377389
286 2808900847
287 2812325351
288 2844843582
289 2844854061
290 2848552654
291 2857733455
292 2857738824
293 2862993770
294 2863073310
295 2866555030
296 2884766754
297 2895660809
298 2917744666
299 2919055569
300 2919445395
301 2919525706
302 2928121662
303 2928153715
304 2935411940
305 2966927394
306 8046353936
307 8056209620
308 8057347119

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00570

HRDC

HRDC domain

543

610

0.97

PF09382

RQC

RQC domain

399

516

0.96

PF16124

RecQ_Zn_bind

RecQ zinc-binding

335

397

0.95

PF00271

Helicase_C

Helicase conserved C-terminal domain

212

324

0.91

PF00270

DEAD

DEAD/DEAH box helicase

19

184

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
1wud-assembly1.cif.gz_A e. coli recq hrdc domain 0.9788 563 631
2rhf-assembly1.cif.gz_A d. radiodurans recq hrdc domain 3 0.9556 560 631
2rhf-assembly1.cif.gz_A d. radiodurans recq hrdc domain 3 0.8953 560 631
1wud-assembly1.cif.gz_A e. coli recq hrdc domain 0.868 563 631
5lb8-assembly2.cif.gz_D crystal structure of human recql5 helicase apo form. 0.8656 45 426
ID Description Score Start End Superfamily
4q48B02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9855 241 373 3.40.50.300
4q48B02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9779 241 373 3.40.50.300
af_A0A1D6H058_407_632_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.968 45 241 3.40.50.300
af_Q2G090_1_198_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9563 44 238 3.40.50.300
af_P46063_48_282_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9526 45 241 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A7W5QDV2-F1-model_v4 deleted 0.9772 42 184
AF-A0A7C7BU58-F1-model_v4 DNA 3'-5' helicase (EC 5.6.2.4) 0.9676 46 238 GO:0003676
GO:0005524
GO:0005737
GO:0006281
GO:0006310
GO:0009378
GO:0016787
GO:0030894
GO:0043138
GO:0043590
AF-A0A7C7BU58-F1-model_v4 DNA 3'-5' helicase (EC 5.6.2.4) 0.9532 46 238 GO:0003676
GO:0005524
GO:0005737
GO:0006281
GO:0006310
GO:0009378
GO:0016787
GO:0030894
GO:0043138
GO:0043590
AF-A0A0S7GWJ5-F1-model_v4 deleted 0.9364 42 253
AF-M6W2S2-F1-model_v4 DEAD/DEAH box helicase 0.9162 47 268 GO:0003676
GO:0005524
GO:0005694
GO:0005737
GO:0006281
GO:0006310
GO:0009378
GO:0016787
GO:0043138

Map