F222771

General Info

Members Datasets Scaffolds Average Seq Length
155 98 310 348

Family's Representative Sequence

Representative Sequence 3300037471|Ga0395905_0018191|Ga0395905_0018191_88_1275
Length 395
Sequence MKGSEIYMHRCLELAQMGRGNVAPNPMVGSVLVHNEVIIGEGYHRKYGEAHAEVNCLNSVKPEHQHLIGQSTLYVSLEPCAHFGKTPPCADLIVRKRIPKVVIGCRDPFVEVAGKGIEKLKAGGVEVELGVLEKACKDLNKRFFTFHTKHRPYVVLKWAQTGDGKMAAPSDSPDGREPSAQIPLKQDADNSIDLSEALQPGQIPPSGGGRAARLLISNEYTNRLVHKWRGDEMAIMVGTNTALSDDPELSTRLWPGKNPVRLVVDMDLRLPGSLKLMDGTIPTIVFNSKRHTIEDLKSGWQSGVHFYQVTKDVNLVHQMMNALFNMSIQSVLVEGGAYLLQSFIDEGLWDEARVITNEEMIIGNGLLAPVLNKYKKIHSESILSDKIRIYQPVHL

Samples

Sample ID Description Type Environment
1 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
7 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
8 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
11 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
12 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
13 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
14 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
17 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
20 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
23 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
24 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
25 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
26 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
29 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
30 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
36 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
41 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
42 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
49 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
50 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
51 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
52 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
53 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
82 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
83 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
84 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
85 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
86 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
87 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
88 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
89 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
90 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
91 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
92 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
93 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
94 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
95 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
96 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
97 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
98 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.35
Metatranscriptomes 0
Isolates 0.65

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 96.77
Stem 0
Stem Tuber 0
Unclassified 14.19

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0395905_0018191 3300037471 Bacteria 6670
2 rootH2_10013019 3300003320 Bacteria 26132
3 rootH2_10015349 3300003320 Bacteria 24566
4 rootH1_10138055 3300003323 Bacteria 5333
5 Ga0070676_10026188 3300005328 Unclassified 3301
6 Ga0070670_100026242 3300005331 Bacteria 5015
7 Ga0070670_100201141 3300005331 Bacteria 1731
8 Ga0070677_10028442 3300005333 Bacteria 2112
9 Ga0068869_100011685 3300005334 Bacteria 5769
10 Ga0070666_10033698 3300005335 Bacteria 3391
11 Ga0070668_100078906 3300005347 Bacteria 2576
12 Ga0070675_100071945 3300005354 Bacteria 2870
13 Ga0070673_100100262 3300005364 Bacteria 2384
14 Ga0070659_100034496 3300005366 Bacteria 3936
15 Ga0070667_100049119 3300005367 Bacteria 3553
16 Ga0070667_100129425 3300005367 Unclassified 2202
17 Ga0070667_100173211 3300005367 Bacteria 1906
18 Ga0070685_10044759 3300005466 Bacteria 2535
19 Ga0070685_10124855 3300005466 Bacteria 1602
20 Ga0070679_100000158 3300005530 Bacteria 54895
21 Ga0068853_100046854 3300005539 Bacteria 3709
22 Ga0068853_100063036 3300005539 Bacteria 3210
23 Ga0068853_100091406 3300005539 Bacteria 2677
24 Ga0070672_100021329 3300005543 Bacteria 4738
25 Ga0070665_100000013 3300005548 Bacteria 484927
26 Ga0070665_100004338 3300005548 Bacteria 14917
27 Ga0070665_100459386 3300005548 Bacteria 1283
28 Ga0070664_100174314 3300005564 Bacteria 1909
29 Ga0068854_100051269 3300005578 Bacteria 2956
30 Ga0068854_100223307 3300005578 Unclassified 1491
31 Ga0068852_100000248 3300005616 Bacteria 36699
32 Ga0068852_100093976 3300005616 Bacteria 2689
33 Ga0068859_100011757 3300005617 Bacteria 8793
34 Ga0068859_100021573 3300005617 Bacteria 6465
35 Ga0068864_100087430 3300005618 Bacteria 2744
36 Ga0068864_100208221 3300005618 Bacteria 1800
37 Ga0068861_100021714 3300005719 Unclassified 4616
38 Ga0068861_100074410 3300005719 Bacteria 2641
39 Ga0068870_10084167 3300005840 Bacteria 1765
40 Ga0068863_100010020 3300005841 Bacteria 9222
41 Ga0068863_100184052 3300005841 Bacteria 2006
42 Ga0068860_100001930 3300005843 Bacteria 21943
43 Ga0068860_100002513 3300005843 Bacteria 19240
44 Ga0068860_100003819 3300005843 Bacteria 15494
45 Ga0068860_100003965 3300005843 Bacteria 15198
46 Ga0068860_100054919 3300005843 Bacteria 3786
47 Ga0068862_100102872 3300005844 Bacteria 2500
48 Ga0068862_100273007 3300005844 Bacteria 1547
49 Ga0068871_100086511 3300006358 Bacteria 2604
50 Ga0075428_100033081 3300006844 Bacteria 5710
51 Ga0075431_100030039 3300006847 Bacteria 5596
52 Ga0068865_100006139 3300006881 Bacteria 7324
53 Ga0097620_100011757 3300006931 Bacteria 8793
54 Ga0097620_100021573 3300006931 Bacteria 6465
55 Ga0105240_10085812 3300009093 Bacteria 3857
56 Ga0105240_10512171 3300009093 Unclassified 1333
57 Ga0105247_10003291 3300009101 Bacteria 10587
58 Ga0105242_10061285 3300009176 Bacteria 3094
59 Ga0105242_10098101 3300009176 Bacteria 2478
60 Ga0105237_10002692 3300009545 Bacteria 21745
61 Ga0105237_10021504 3300009545 Bacteria 6632
62 Ga0105249_10020766 3300009553 Bacteria 5873
63 Ga0105249_10023320 3300009553 Bacteria 5552
64 Ga0105239_10045911 3300010375 Bacteria 4788
65 Ga0105239_10095748 3300010375 Bacteria 3279
66 Ga0105246_10016514 3300011119 Unclassified 4675
67 Ga0157373_10106430 3300013100 Unclassified 1972
68 Ga0157371_10074150 3300013102 Bacteria 2410
69 Ga0157371_10087791 3300013102 Bacteria 2202
70 Ga0157369_10165832 3300013105 Bacteria 2330
71 Ga0157374_10000007 3300013296 Bacteria 595643
72 Ga0157374_10221619 3300013296 Bacteria 1856
73 Ga0157378_10136531 3300013297 Bacteria 2274
74 Ga0163162_10000386 3300013306 Bacteria 40256
75 Ga0163162_10000487 3300013306 Bacteria 36809
76 Ga0163162_10002936 3300013306 Bacteria 16266
77 Ga0163162_10007940 3300013306 Bacteria 10348
78 Ga0163162_10030815 3300013306 Bacteria 5315
79 Ga0157372_10150882 3300013307 Bacteria 2682
80 Ga0157372_10181138 3300013307 Unclassified 2439
81 Ga0157372_10587902 3300013307 Bacteria 1298
82 Ga0157375_10213152 3300013308 Unclassified 2089
83 Ga0157375_10481225 3300013308 Bacteria 1406
84 Ga0163163_10384971 3300014325 Bacteria 1460
85 Ga0157380_10011249 3300014326 Bacteria 6461
86 Ga0157380_10105297 3300014326 Bacteria 2358
87 Ga0157379_10037066 3300014968 Bacteria 4348
88 Ga0157379_10092198 3300014968 Bacteria 2718
89 Ga0157379_10179007 3300014968 Bacteria 1915
90 Ga0157376_10029683 3300014969 Bacteria 4358
91 Ga0157376_10129087 3300014969 Unclassified 2253
92 Ga0207710_10001860 3300025900 Bacteria 10160
93 Ga0207688_10002739 3300025901 Bacteria 9536
94 Ga0207680_10111735 3300025903 Bacteria 1773
95 Ga0207647_10000045 3300025904 Bacteria 90413
96 Ga0207647_10036505 3300025904 Unclassified 3122
97 Ga0207645_10003008 3300025907 Bacteria 13023
98 Ga0207643_10012254 3300025908 Unclassified 4637
99 Ga0207695_10166166 3300025913 Bacteria 2135
100 Ga0207671_10000318 3300025914 Bacteria 71076
101 Ga0207671_10002818 3300025914 Bacteria 18085
102 Ga0207652_10000013 3300025921 Bacteria 222247
103 Ga0207650_10146084 3300025925 Bacteria 1862
104 Ga0207650_10190805 3300025925 Bacteria 1637
105 Ga0207659_10073091 3300025926 Unclassified 2509
106 Ga0207659_10083854 3300025926 Bacteria 2364
107 Ga0207704_10105386 3300025938 Bacteria 1891
108 Ga0207691_10023117 3300025940 Bacteria 5853
109 Ga0207691_10058654 3300025940 Bacteria 3501
110 Ga0207689_10001469 3300025942 Bacteria 22581
111 Ga0207689_10002196 3300025942 Bacteria 18302
112 Ga0207689_10086598 3300025942 Bacteria 2575
113 Ga0207712_10019045 3300025961 Bacteria 4478
114 Ga0207712_10030334 3300025961 Bacteria 3635
115 Ga0207668_10072130 3300025972 Bacteria 2469
116 Ga0207640_10194243 3300025981 Unclassified 1532
117 Ga0207658_10239514 3300025986 Bacteria 1536
118 Ga0207639_10143688 3300026041 Bacteria 1991
119 Ga0207641_10000121 3300026088 Bacteria 114943
120 Ga0207641_10163847 3300026088 Bacteria 2023
121 Ga0207648_10004740 3300026089 Bacteria 13897
122 Ga0207674_10223750 3300026116 Unclassified 1830
123 Ga0207675_100036556 3300026118 Unclassified 4581
124 Ga0207675_100084554 3300026118 Bacteria 2977
125 Ga0207683_10128668 3300026121 Bacteria 2277
126 Ga0207698_10002071 3300026142 Bacteria 11825
127 Ga0268266_10000024 3300028379 Bacteria 490820
128 Ga0268266_10011099 3300028379 Bacteria 7844
129 Ga0268266_10152460 3300028379 Bacteria 2084
130 Ga0268265_10064452 3300028380 Bacteria 2823
131 Ga0268265_10194649 3300028380 Bacteria 1754
132 Ga0268264_10005427 3300028381 Bacteria 10800
133 Ga0268264_10009730 3300028381 Bacteria 7958
134 Ga0268264_10024556 3300028381 Bacteria 4921
135 Ga0265327_10000026 3300031251 Bacteria 379288
136 Ga0307509_10298725 3300031507 Bacteria 1360
137 Ga0395899_0150806 3300037312 Bacteria 1648
138 Ga0395900_0179138 3300037418 Unclassified 2155
139 Ga0395905_0433571 3300037471 Unclassified 1211
140 Ga0439449_0001158 3300042007 Bacteria 10342
141 Ga0439457_000995 3300042014 Bacteria 8539
142 Ga0466972_0000003 3300044658 Bacteria 391452
143 Ga0466970_0005223 3300044765 Bacteria 6426
144 Ga0466970_0032162 3300044765 Unclassified 2772
145 Ga0466959_0002751 3300045049 Bacteria 11327
146 Ga0466959_0172209 3300045049 Bacteria 1518
147 Ga0466958_0299461 3300045836 Unclassified 1032
148 Ga0495634_0061438 3300046642 Unclassified 2498
149 Ga0495635_0124008 3300046663 Bacteria 1762
150 Ga0495658_0011980 3300046683 Bacteria 4378
151 Ga0495684_0180556 3300047471 Bacteria 1564
152 Ga0501221_003949 3300049704 Bacteria 2449
153 Ga0501266_000641 3300049763 Bacteria 4561
154 Ga0466962_0017828 3300061719 Unclassified 3417
155 2819680689 2818991460 Bacteria 7595395
156 Ga0395905_0018191
157 rootH2_10013019
158 rootH2_10015349
159 rootH1_10138055
160 Ga0070676_10026188
161 Ga0070670_100026242
162 Ga0070670_100201141
163 Ga0070677_10028442
164 Ga0068869_100011685
165 Ga0070666_10033698
166 Ga0070668_100078906
167 Ga0070675_100071945
168 Ga0070673_100100262
169 Ga0070659_100034496
170 Ga0070667_100049119
171 Ga0070667_100129425
172 Ga0070667_100173211
173 Ga0070685_10044759
174 Ga0070685_10124855
175 Ga0070679_100000158
176 Ga0068853_100046854
177 Ga0068853_100063036
178 Ga0068853_100091406
179 Ga0070672_100021329
180 Ga0070665_100000013
181 Ga0070665_100004338
182 Ga0070665_100459386
183 Ga0070664_100174314
184 Ga0068854_100051269
185 Ga0068854_100223307
186 Ga0068852_100000248
187 Ga0068852_100093976
188 Ga0068859_100011757
189 Ga0068859_100021573
190 Ga0068864_100087430
191 Ga0068864_100208221
192 Ga0068861_100021714
193 Ga0068861_100074410
194 Ga0068870_10084167
195 Ga0068863_100010020
196 Ga0068863_100184052
197 Ga0068860_100001930
198 Ga0068860_100002513
199 Ga0068860_100003819
200 Ga0068860_100003965
201 Ga0068860_100054919
202 Ga0068862_100102872
203 Ga0068862_100273007
204 Ga0068871_100086511
205 Ga0075428_100033081
206 Ga0075431_100030039
207 Ga0068865_100006139
208 Ga0097620_100011757
209 Ga0097620_100021573
210 Ga0105240_10085812
211 Ga0105240_10512171
212 Ga0105247_10003291
213 Ga0105242_10061285
214 Ga0105242_10098101
215 Ga0105237_10002692
216 Ga0105237_10021504
217 Ga0105249_10020766
218 Ga0105249_10023320
219 Ga0105239_10045911
220 Ga0105239_10095748
221 Ga0105246_10016514
222 Ga0157373_10106430
223 Ga0157371_10074150
224 Ga0157371_10087791
225 Ga0157369_10165832
226 Ga0157374_10000007
227 Ga0157374_10221619
228 Ga0157378_10136531
229 Ga0163162_10000386
230 Ga0163162_10000487
231 Ga0163162_10002936
232 Ga0163162_10007940
233 Ga0163162_10030815
234 Ga0157372_10150882
235 Ga0157372_10181138
236 Ga0157372_10587902
237 Ga0157375_10213152
238 Ga0157375_10481225
239 Ga0163163_10384971
240 Ga0157380_10011249
241 Ga0157380_10105297
242 Ga0157379_10037066
243 Ga0157379_10092198
244 Ga0157379_10179007
245 Ga0157376_10029683
246 Ga0157376_10129087
247 Ga0207710_10001860
248 Ga0207688_10002739
249 Ga0207680_10111735
250 Ga0207647_10000045
251 Ga0207647_10036505
252 Ga0207645_10003008
253 Ga0207643_10012254
254 Ga0207695_10166166
255 Ga0207671_10000318
256 Ga0207671_10002818
257 Ga0207652_10000013
258 Ga0207650_10146084
259 Ga0207650_10190805
260 Ga0207659_10073091
261 Ga0207659_10083854
262 Ga0207704_10105386
263 Ga0207691_10023117
264 Ga0207691_10058654
265 Ga0207689_10001469
266 Ga0207689_10002196
267 Ga0207689_10086598
268 Ga0207712_10019045
269 Ga0207712_10030334
270 Ga0207668_10072130
271 Ga0207640_10194243
272 Ga0207658_10239514
273 Ga0207639_10143688
274 Ga0207641_10000121
275 Ga0207641_10163847
276 Ga0207648_10004740
277 Ga0207674_10223750
278 Ga0207675_100036556
279 Ga0207675_100084554
280 Ga0207683_10128668
281 Ga0207698_10002071
282 Ga0268266_10000024
283 Ga0268266_10011099
284 Ga0268266_10152460
285 Ga0268265_10064452
286 Ga0268265_10194649
287 Ga0268264_10005427
288 Ga0268264_10009730
289 Ga0268264_10024556
290 Ga0265327_10000026
291 Ga0307509_10298725
292 Ga0395899_0150806
293 Ga0395900_0179138
294 Ga0395905_0433571
295 Ga0439449_0001158
296 Ga0439457_000995
297 Ga0466972_0000003
298 Ga0466970_0005223
299 Ga0466970_0032162
300 Ga0466959_0002751
301 Ga0466959_0172209
302 Ga0466958_0299461
303 Ga0495634_0061438
304 Ga0495635_0124008
305 Ga0495658_0011980
306 Ga0495684_0180556
307 Ga0501221_003949
308 Ga0501266_000641
309 Ga0466962_0017828
310 2819680689

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01872

RibD_C

RibD C-terminal domain

152

371

0.91

PF00383

dCMP_cyt_deam_1

Cytidine and deoxycytidylate deaminase zinc-binding region

1

105

0.9

PF14437

MafB19-deam

MafB19-like deaminase

4

147

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
2hxv-assembly1.cif.gz_A-2 crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828) from thermotoga maritima at 1.80 a resolution 0.8846 3 369
3zpc-assembly1.cif.gz_B acinetobacter baumannii ribd, form 1 0.876 3 369
2hxv-assembly1.cif.gz_A-2 crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828) from thermotoga maritima at 1.80 a resolution 0.8677 3 369
3zpg-assembly1.cif.gz_A-2 acinetobacter baumannii ribd, form 2 0.8599 3 369
3zpc-assembly1.cif.gz_B acinetobacter baumannii ribd, form 1 0.8594 3 369
ID Description Score Start End Superfamily
af_Q8GWP5_63_211_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9714 4 144 3.40.140.10
4g3mB01 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9549 4 140 3.40.140.10
2hxvA01 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9429 4 151 3.40.140.10
4g3mB01 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9277 4 140 3.40.140.10
2hxvA01 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9123 4 151 3.40.140.10
ID Description Score Start End GO Terms
AF-A0A4Q3V7W8-F1-model_v4 Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD (EC 1.1.1.193, EC 3.5.4.26) 0.994 4 144 GO:0008835
GO:0009231
GO:0016491
AF-A0A355FI80-F1-model_v4 diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) 0.9862 1 147 GO:0008270
GO:0008835
GO:0009231
AF-D7NDR0-F1-model_v4 Riboflavin biosynthesis protein RibD 0.9844 2 122 GO:0008835
AF-U2J5G3-F1-model_v4 Putative riboflavin biosynthesis protein RibD 0.9816 3 160 GO:0008835
GO:0009231
AF-A0A3C0IL99-F1-model_v4 Riboflavin biosynthesis protein RibD 0.981 9 91 GO:0008835

Map