F224883

General Info

Members Datasets Scaffolds Average Seq Length
156 94 156 338

Family's Representative Sequence

Representative Sequence 3300014325|Ga0163163_10000020|Ga0163163_1000002013
Length 383
Sequence LVLFYQFRRVDGYCRVTPGIHQLRRRPHTCGFFVAASGKPLQPTMIIVLKPGISKKHEAIILKEIRKRGYKPHVMRGVSRTVIGAIGDELTHQSLETLGVVFPEIVESVMPVQKRYKLVSREAHGQSSTVSVGKHSIGGKKFHVMAGPCSVESEKQLLQTAEAVKAAGATVLRGGAFKPRTSPYEFQGLGQKGLKLLAKARKETGLAVITELLSESHTEMVAEYADIIQIGARNAQNFQLLIAAARTGKPILLKRGLSMKIEEWLLAGEYVLSNANSNLMFCERGIRTFETYTRNTLDLATIPIIKQESHCPIVIDPSQGAGRADLVIAMCKGAVAMGADALLIEVHPNPAEAWSDGTQQVSLEIFSQLMKELQPFIVASGRE

Samples

Sample ID Description Type Environment
1 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
2 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
3 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
6 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
7 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
8 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
9 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
10 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
11 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
12 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
13 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
14 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
15 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
16 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
17 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
18 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
19 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
20 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
21 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
22 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
23 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
24 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
25 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
26 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
27 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
38 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
39 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
40 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
41 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
42 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
43 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
44 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
45 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
46 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
47 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
48 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
49 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
50 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
51 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
52 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
53 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
54 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
55 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
56 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
57 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
58 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
59 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
60 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
61 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
62 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
63 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
64 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
65 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
66 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
67 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
68 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
69 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
70 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
71 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
72 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
73 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
74 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
75 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
76 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
77 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
78 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
79 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
80 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
81 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
82 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
83 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
84 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
90 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
91 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
92 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
93 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
94 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.64
Rhizosphere 98.08
Stem 0
Stem Tuber 0
Unclassified 1.28

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070689_100001781 3300005340 Bacteria 13827
2 Ga0070689_100009632 3300005340 Bacteria 6857
3 Ga0070691_10083173 3300005341 Bacteria 1570
4 Ga0070688_100015365 3300005365 Unclassified 4355
5 Ga0070688_100075833 3300005365 Bacteria 2162
6 Ga0070714_100016151 3300005435 Bacteria 6022
7 Ga0070694_100023123 3300005444 Bacteria 3993
8 Ga0070681_10179393 3300005458 Bacteria 2039
9 Ga0070681_10217207 3300005458 Bacteria 1827
10 Ga0070685_10030921 3300005466 Bacteria 2987
11 Ga0070679_100082085 3300005530 Bacteria 3214
12 Ga0070684_100345328 3300005535 Bacteria 1368
13 Ga0070686_100002404 3300005544 Bacteria 10318
14 Ga0070686_100006894 3300005544 Bacteria 6329
15 Ga0070686_100037640 3300005544 Bacteria 3002
16 Ga0070686_100139185 3300005544 Bacteria 1687
17 Ga0070704_100039977 3300005549 Bacteria 3224
18 Ga0070704_100176110 3300005549 Bacteria 1706
19 Ga0068855_100016549 3300005563 Bacteria 8870
20 Ga0068855_100218997 3300005563 Bacteria 2135
21 Ga0068855_100221953 3300005563 Bacteria 2119
22 Ga0068857_100471751 3300005577 Bacteria 1175
23 Ga0068859_100374412 3300005617 Bacteria 1520
24 Ga0075428_100001513 3300006844 Bacteria 24881
25 Ga0075431_100028353 3300006847 Bacteria 5752
26 Ga0075429_100009456 3300006880 Bacteria 8460
27 Ga0075429_100025606 3300006880 Bacteria 5121
28 Ga0097620_100374406 3300006931 Bacteria 1520
29 Ga0105240_10001132 3300009093 Bacteria 46700
30 Ga0105240_10040189 3300009093 Bacteria 5986
31 Ga0111539_10035933 3300009094 Bacteria 5997
32 Ga0111539_10138609 3300009094 Bacteria 2849
33 Ga0111539_10254305 3300009094 Bacteria 2046
34 Ga0111539_10362660 3300009094 Bacteria 1687
35 Ga0105248_10215262 3300009177 Bacteria 2164
36 Ga0105238_10115551 3300009551 Bacteria 2663
37 Ga0105238_10128133 3300009551 Bacteria 2516
38 Ga0157372_10320156 3300013307 Bacteria 1806
39 Ga0157375_10000006 3300013308 Bacteria 384086
40 Ga0157375_10162745 3300013308 Bacteria 2374
41 Ga0163163_10000020 3300014325 Bacteria 196885
42 Ga0163163_10008893 3300014325 Bacteria 8944
43 Ga0163163_10291668 3300014325 Bacteria 1683
44 Ga0213875_10000316 3300021388 Bacteria 46077
45 Ga0207707_10022512 3300025912 Bacteria 5508
46 Ga0207695_10038408 3300025913 Bacteria 5155
47 Ga0207657_10072874 3300025919 Bacteria 2904
48 Ga0207652_10077845 3300025921 Bacteria 2894
49 Ga0207694_10074238 3300025924 Bacteria 2662
50 Ga0207664_10157632 3300025929 Bacteria 1934
51 Ga0207670_10021824 3300025936 Unclassified 3956
52 Ga0207670_10024706 3300025936 Bacteria 3760
53 Ga0207667_10111018 3300025949 Bacteria 2828
54 Ga0207702_10435960 3300026078 Bacteria 1269
55 Ga0207674_10005516 3300026116 Bacteria 15022
56 Ga0207674_10080418 3300026116 Bacteria 3262
57 Ga0265337_1029530 3300028556 Bacteria 1638
58 Ga0265323_10000520 3300028653 Bacteria 21448
59 Ga0265336_10010506 3300028666 Bacteria 3171
60 Ga0265338_10000208 3300028800 Bacteria 109817
61 Ga0265338_10000670 3300028800 Bacteria 59227
62 Ga0265338_10002163 3300028800 Bacteria 30175
63 Ga0265338_10003223 3300028800 Bacteria 23268
64 Ga0265338_10004881 3300028800 Bacteria 17863
65 Ga0265338_10022990 3300028800 Bacteria 6427
66 Ga0265338_10048890 3300028800 Bacteria 3840
67 Ga0265338_10200595 3300028800 Bacteria 1505
68 Ga0265338_10217265 3300028800 Bacteria 1430
69 Ga0265320_10000755 3300031240 Bacteria 24856
70 Ga0265320_10002426 3300031240 Bacteria 12990
71 Ga0265320_10008349 3300031240 Bacteria 6342
72 Ga0265320_10053780 3300031240 Bacteria 1944
73 Ga0265329_10001218 3300031242 Bacteria 12624
74 Ga0265339_10016165 3300031249 Bacteria 4455
75 Ga0265339_10070928 3300031249 Bacteria 1857
76 Ga0265331_10002557 3300031250 Bacteria 12228
77 Ga0265327_10001870 3300031251 Bacteria 24380
78 Ga0265316_10153550 3300031344 Bacteria 1724
79 Ga0265314_10000148 3300031711 Bacteria 105207
80 Ga0307406_10006099 3300031901 Bacteria 6623
81 Ga0307412_10024500 3300031911 Bacteria 3726
82 Ga0373940_0042273 3300035088 Bacteria 1256
83 Ga0373954_0029709 3300035118 Bacteria 2518
84 Ga0373956_0010661 3300035119 Bacteria 3773
85 Ga0373946_0071115 3300035171 Bacteria 1503
86 Ga0373935_0080477 3300035692 Bacteria 2116
87 Ga0373935_0164413 3300035692 Bacteria 1515
88 Ga0373927_0020406 3300035695 Bacteria 4345
89 Ga0373947_0000819 3300035725 Bacteria 18757
90 Ga0373925_0004054 3300037068 Bacteria 11130
91 Ga0373925_0008958 3300037068 Bacteria 7293
92 Ga0395905_0022507 3300037471 Bacteria 5961
93 Ga0395905_0025524 3300037471 Bacteria 5573
94 Ga0436364_1257195 3300037853 Bacteria 162167
95 Ga0451577_0013192 3300042876 Bacteria 7744
96 Ga0451577_0020171 3300042876 Bacteria 6121
97 Ga0451577_0119398 3300042876 Bacteria 2361
98 Ga0451577_0248597 3300042876 Bacteria 1610
99 Ga0453684_0000866 3300044712 Bacteria 101700
100 Ga0453684_0010752 3300044712 Bacteria 15551
101 Ga0453684_0044696 3300044712 Bacteria 5920
102 Ga0466957_0120655 3300044842 Unclassified 1671
103 Ga0451576_0046347 3300045051 Bacteria 4578
104 Ga0451576_0078656 3300045051 Bacteria 3432
105 Ga0451576_0133458 3300045051 Bacteria 2588
106 Ga0451576_0151796 3300045051 Bacteria 2416
107 Ga0451576_0167876 3300045051 Bacteria 2290
108 Ga0451576_0194075 3300045051 Bacteria 2121
109 Ga0451576_0264783 3300045051 Bacteria 1797
110 Ga0451576_0856038 3300045051 Bacteria 954
111 Ga0495592_0000027 3300046454 Bacteria 132938
112 Ga0495592_0014494 3300046454 Bacteria 5983
113 Ga0495641_0042699 3300046461 Bacteria 2100
114 Ga0495653_0134356 3300046463 Bacteria 1747
115 Ga0495618_0005836 3300046514 Bacteria 7484
116 Ga0495628_0000349 3300046516 Bacteria 42121
117 Ga0495630_0000054 3300046517 Bacteria 91921
118 Ga0495630_0015674 3300046517 Bacteria 5538
119 Ga0495630_0024230 3300046517 Bacteria 4488
120 Ga0495666_0006299 3300046526 Bacteria 5979
121 Ga0495666_0006720 3300046526 Bacteria 5785
122 Ga0495640_0029583 3300046533 Bacteria 3931
123 Ga0495640_0069447 3300046533 Bacteria 2369
124 Ga0495586_0000014 3300046535 Bacteria 131102
125 Ga0495586_0003346 3300046535 Bacteria 8593
126 Ga0495586_0016219 3300046535 Bacteria 3962
127 Ga0495645_0012165 3300046543 Bacteria 6060
128 Ga0495645_0036369 3300046543 Bacteria 3589
129 Ga0495634_0023605 3300046642 Unclassified 4320
130 Ga0495599_0043850 3300046678 Bacteria 2807
131 Ga0495646_0124257 3300046680 Bacteria 1458
132 Ga0495658_0006412 3300046683 Bacteria 5779
133 Ga0495581_0035821 3300047315 Bacteria 2871
134 Ga0495674_0002183 3300047319 Bacteria 19227
135 Ga0495676_0019608 3300047321 Bacteria 5948
136 Ga0495676_0103561 3300047321 Bacteria 2101
137 Ga0495675_0021798 3300047444 Bacteria 4082
138 Ga0495684_0196872 3300047471 Bacteria 1487
139 Ga0496115_0002172 3300048918 Bacteria 14041
140 Ga0501033_0027039 3300049570 Bacteria 4316
141 Ga0501034_0001358 3300049571 Bacteria 33063
142 Ga0501034_0137079 3300049571 Bacteria 2428
143 Ga0501039_0181691 3300049575 Bacteria 1654
144 Ga0501043_0226162 3300049579 Bacteria 1446
145 Ga0501047_0106395 3300049581 Bacteria 2686
146 Ga0501083_0050959 3300049744 Bacteria 2785
147 Ga0501044_0019509 3300049823 Bacteria 7250
148 Ga0501044_0251348 3300049823 Bacteria 1709
149 nmdc:mga09592_22841_c1 3300050508 Bacteria 5161
150 nmdc:mga09592_54612_c1 3300050508 Bacteria 3375
151 nmdc:mga0qj67_180446_c1 3300050509 Bacteria 1714
152 nmdc:mga06r32_130953_c1 3300050510 Bacteria 2480
153 nmdc:mga06r32_253455_c1 3300050510 Bacteria 1748
154 nmdc:mga08y16_28587_c2 3300050511 Bacteria 3813
155 nmdc:mga08y16_59511_c1 3300050511 Bacteria 3989
156 nmdc:mga08y16_604621_c1 3300050511 Bacteria 1105

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300045051 Ga0451576_0046347 Ga0451576_0046347_264_1193 307
2 3300045051 Ga0451576_0133458 Ga0451576_0133458_1641_2567 307
3 3300045051 Ga0451576_0856038 Ga0451576_0856038_15_944 307
4 3300047321 Ga0495676_0103561 Ga0495676_0103561_1121_2050 307
5 3300049575 Ga0501039_0181691 Ga0501039_0181691_717_1643 307
6 3300045051 Ga0451576_0264783 Ga0451576_0264783_837_1778 308
7 3300028800 Ga0265338_10022990 Ga0265338_100229906 315
8 3300035692 Ga0373935_0164413 Ga0373935_0164413_148_1134 322
9 3300035695 Ga0373927_0020406 Ga0373927_0020406_116_1102 322
10 3300037068 Ga0373925_0008958 Ga0373925_0008958_2968_3954 322
11 3300031901 Ga0307406_10006099 Ga0307406_100060993 323
12 3300042876 Ga0451577_0013192 Ga0451577_0013192_5027_6031 323
13 3300031911 Ga0307412_10024500 Ga0307412_100245003 327
14 3300028800 Ga0265338_10217265 Ga0265338_102172652 330
15 3300031240 Ga0265320_10053780 Ga0265320_100537802 330
16 3300049571 Ga0501034_0001358 Ga0501034_0001358_15894_16901 335
17 3300049579 Ga0501043_0226162 Ga0501043_0226162_311_1330 335
18 3300049823 Ga0501044_0019509 Ga0501044_0019509_4537_5556 335
19 3300005340 Ga0070689_100009632 Ga0070689_1000096327 337
20 3300005341 Ga0070691_10083173 Ga0070691_100831731 337
21 3300005365 Ga0070688_100075833 Ga0070688_1000758331 337
22 3300005435 Ga0070714_100016151 Ga0070714_1000161513 337
23 3300005444 Ga0070694_100023123 Ga0070694_1000231232 337
24 3300005458 Ga0070681_10179393 Ga0070681_101793932 337
25 3300005535 Ga0070684_100345328 Ga0070684_1003453281 337
26 3300005544 Ga0070686_100002404 Ga0070686_1000024043 337
27 3300005544 Ga0070686_100006894 Ga0070686_1000068942 337
28 3300005544 Ga0070686_100037640 Ga0070686_1000376403 337
29 3300005544 Ga0070686_100139185 Ga0070686_1001391851 337
30 3300005549 Ga0070704_100039977 Ga0070704_1000399772 337
31 3300005549 Ga0070704_100176110 Ga0070704_1001761102 337
32 3300005617 Ga0068859_100374412 Ga0068859_1003744122 337
33 3300006844 Ga0075428_100001513 Ga0075428_10000151322 337
34 3300006880 Ga0075429_100009456 Ga0075429_1000094567 337
35 3300006931 Ga0097620_100374406 Ga0097620_1003744062 337
36 3300009093 Ga0105240_10001132 Ga0105240_1000113212 337
37 3300009093 Ga0105240_10040189 Ga0105240_100401897 337
38 3300009094 Ga0111539_10035933 Ga0111539_100359333 337
39 3300009094 Ga0111539_10254305 Ga0111539_102543051 337
40 3300009094 Ga0111539_10362660 Ga0111539_103626602 337
41 3300009177 Ga0105248_10215262 Ga0105248_102152621 337
42 3300009551 Ga0105238_10115551 Ga0105238_101155512 337
43 3300009551 Ga0105238_10128133 Ga0105238_101281332 337
44 3300013308 Ga0157375_10000006 Ga0157375_10000006225 337
45 3300013308 Ga0157375_10162745 Ga0157375_101627452 337
46 3300014325 Ga0163163_10000020 Ga0163163_1000002013 337
47 3300014325 Ga0163163_10008893 Ga0163163_100088935 337
48 3300014325 Ga0163163_10291668 Ga0163163_102916681 337
49 3300025913 Ga0207695_10038408 Ga0207695_100384083 337
50 3300025924 Ga0207694_10074238 Ga0207694_100742382 337
51 3300025929 Ga0207664_10157632 Ga0207664_101576322 337
52 3300025936 Ga0207670_10024706 Ga0207670_100247061 337
53 3300026116 Ga0207674_10005516 Ga0207674_100055163 337
54 3300028556 Ga0265337_1029530 Ga0265337_10295301 337
55 3300028666 Ga0265336_10010506 Ga0265336_100105062 337
56 3300028800 Ga0265338_10000208 Ga0265338_1000020874 337
57 3300028800 Ga0265338_10000670 Ga0265338_1000067047 337
58 3300028800 Ga0265338_10002163 Ga0265338_100021638 337
59 3300028800 Ga0265338_10003223 Ga0265338_1000322319 337
60 3300028800 Ga0265338_10004881 Ga0265338_1000488110 337
61 3300028800 Ga0265338_10048890 Ga0265338_100488901 337
62 3300028800 Ga0265338_10200595 Ga0265338_102005951 337
63 3300031240 Ga0265320_10000755 Ga0265320_1000075514 337
64 3300031240 Ga0265320_10002426 Ga0265320_1000242610 337
65 3300031240 Ga0265320_10008349 Ga0265320_100083494 337
66 3300031242 Ga0265329_10001218 Ga0265329_100012186 337
67 3300031249 Ga0265339_10016165 Ga0265339_100161653 337
68 3300031249 Ga0265339_10070928 Ga0265339_100709282 337
69 3300031250 Ga0265331_10002557 Ga0265331_1000255710 337
70 3300031251 Ga0265327_10001870 Ga0265327_1000187014 337
71 3300031344 Ga0265316_10153550 Ga0265316_101535502 337
72 3300031711 Ga0265314_10000148 Ga0265314_100001489 337
73 3300035088 Ga0373940_0042273 Ga0373940_0042273_165_1181 337
74 3300035118 Ga0373954_0029709 Ga0373954_0029709_70_1089 337
75 3300035119 Ga0373956_0010661 Ga0373956_0010661_1831_2850 337
76 3300035171 Ga0373946_0071115 Ga0373946_0071115_411_1430 337
77 3300035692 Ga0373935_0080477 Ga0373935_0080477_522_1541 337
78 3300035725 Ga0373947_0000819 Ga0373947_0000819_17487_18506 337
79 3300037068 Ga0373925_0004054 Ga0373925_0004054_4660_5679 337
80 3300037471 Ga0395905_0022507 Ga0395905_0022507_2770_3786 337
81 3300037471 Ga0395905_0025524 Ga0395905_0025524_4480_5517 337
82 3300042876 Ga0451577_0020171 Ga0451577_0020171_2271_3284 337
83 3300042876 Ga0451577_0119398 Ga0451577_0119398_275_1291 337
84 3300042876 Ga0451577_0248597 Ga0451577_0248597_574_1590 337
85 3300044712 Ga0453684_0000866 Ga0453684_0000866_40973_41986 337
86 3300044712 Ga0453684_0010752 Ga0453684_0010752_6150_7169 337
87 3300044712 Ga0453684_0044696 Ga0453684_0044696_344_1369 337
88 3300045051 Ga0451576_0078656 Ga0451576_0078656_2337_3350 337
89 3300045051 Ga0451576_0167876 Ga0451576_0167876_1135_2223 337
90 3300045051 Ga0451576_0194075 Ga0451576_0194075_813_1832 337
91 3300046454 Ga0495592_0000027 Ga0495592_0000027_103771_104790 337
92 3300046454 Ga0495592_0014494 Ga0495592_0014494_83_1102 337
93 3300046461 Ga0495641_0042699 Ga0495641_0042699_395_1414 337
94 3300046463 Ga0495653_0134356 Ga0495653_0134356_213_1232 337
95 3300046514 Ga0495618_0005836 Ga0495618_0005836_1109_2128 337
96 3300046516 Ga0495628_0000349 Ga0495628_0000349_29704_30723 337
97 3300046517 Ga0495630_0000054 Ga0495630_0000054_42343_43362 337
98 3300046517 Ga0495630_0015674 Ga0495630_0015674_1651_2670 337
99 3300046517 Ga0495630_0024230 Ga0495630_0024230_2867_3886 337
100 3300046526 Ga0495666_0006299 Ga0495666_0006299_4355_5374 337
101 3300046526 Ga0495666_0006720 Ga0495666_0006720_1928_2947 337
102 3300046533 Ga0495640_0029583 Ga0495640_0029583_2767_3786 337
103 3300046533 Ga0495640_0069447 Ga0495640_0069447_136_1155 337
104 3300046535 Ga0495586_0000014 Ga0495586_0000014_31261_32280 337
105 3300046535 Ga0495586_0003346 Ga0495586_0003346_1255_2274 337
106 3300046535 Ga0495586_0016219 Ga0495586_0016219_1149_2168 337
107 3300046543 Ga0495645_0012165 Ga0495645_0012165_2002_3021 337
108 3300046543 Ga0495645_0036369 Ga0495645_0036369_1534_2553 337
109 3300046642 Ga0495634_0023605 Ga0495634_0023605_1642_2661 337
110 3300046678 Ga0495599_0043850 Ga0495599_0043850_1113_2132 337
111 3300046680 Ga0495646_0124257 Ga0495646_0124257_268_1287 337
112 3300046683 Ga0495658_0006412 Ga0495658_0006412_4326_5345 337
113 3300047315 Ga0495581_0035821 Ga0495581_0035821_1789_2808 337
114 3300047319 Ga0495674_0002183 Ga0495674_0002183_9872_10891 337
115 3300047321 Ga0495676_0019608 Ga0495676_0019608_1697_2716 337
116 3300047444 Ga0495675_0021798 Ga0495675_0021798_218_1231 337
117 3300047471 Ga0495684_0196872 Ga0495684_0196872_342_1361 337
118 3300048918 Ga0496115_0002172 Ga0496115_0002172_5518_6537 337
119 3300049570 Ga0501033_0027039 Ga0501033_0027039_2428_3447 337
120 3300049571 Ga0501034_0137079 Ga0501034_0137079_786_1802 337
121 3300049581 Ga0501047_0106395 Ga0501047_0106395_530_1546 337
122 3300049744 Ga0501083_0050959 Ga0501083_0050959_1233_2249 337
123 3300049823 Ga0501044_0251348 Ga0501044_0251348_268_1284 337
124 3300050508 nmdc:mga09592_54612_c1 nmdc:mga09592_54612_c1_1750_2763 337
125 3300050509 nmdc:mga0qj67_180446_c1 nmdc:mga0qj67_180446_c1_482_1495 337
126 3300050510 nmdc:mga06r32_130953_c1 nmdc:mga06r32_130953_c1_735_1748 337
127 3300050511 nmdc:mga08y16_28587_c2 nmdc:mga08y16_28587_c2_1431_2444 337
128 3300050511 nmdc:mga08y16_59511_c1 nmdc:mga08y16_59511_c1_2668_3681 337
129 3300050511 nmdc:mga08y16_604621_c1 nmdc:mga08y16_604621_c1_26_1039 337
130 3300005340 Ga0070689_100001781 Ga0070689_1000017815 338
131 3300005365 Ga0070688_100015365 Ga0070688_1000153652 338
132 3300005458 Ga0070681_10217207 Ga0070681_102172072 338
133 3300005466 Ga0070685_10030921 Ga0070685_100309212 338
134 3300005530 Ga0070679_100082085 Ga0070679_1000820853 338
135 3300005563 Ga0068855_100016549 Ga0068855_10001654911 338
136 3300005563 Ga0068855_100218997 Ga0068855_1002189974 338
137 3300005563 Ga0068855_100221953 Ga0068855_1002219533 338
138 3300005577 Ga0068857_100471751 Ga0068857_1004717511 338
139 3300006847 Ga0075431_100028353 Ga0075431_1000283532 338
140 3300006880 Ga0075429_100025606 Ga0075429_1000256063 338
141 3300009094 Ga0111539_10138609 Ga0111539_101386093 338
142 3300013307 Ga0157372_10320156 Ga0157372_103201562 338
143 3300021388 Ga0213875_10000316 Ga0213875_100003166 338
144 3300025912 Ga0207707_10022512 Ga0207707_100225124 338
145 3300025919 Ga0207657_10072874 Ga0207657_100728742 338
146 3300025921 Ga0207652_10077845 Ga0207652_100778453 338
147 3300025936 Ga0207670_10021824 Ga0207670_100218242 338
148 3300025949 Ga0207667_10111018 Ga0207667_101110184 338
149 3300026078 Ga0207702_10435960 Ga0207702_104359601 338
150 3300026116 Ga0207674_10080418 Ga0207674_100804183 338
151 3300028653 Ga0265323_10000520 Ga0265323_1000052012 338
152 3300037853 Ga0436364_1257195 Ga0436364_1257195_122233_123258 338
153 3300044842 Ga0466957_0120655 Ga0466957_0120655_164_1204 338
154 3300045051 Ga0451576_0151796 Ga0451576_0151796_979_2001 338
155 3300050508 nmdc:mga09592_22841_c1 nmdc:mga09592_22841_c1_1731_2747 338
156 3300050510 nmdc:mga06r32_253455_c1 nmdc:mga06r32_253455_c1_537_1568 338

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00793

DAHP_synth_1

DAHP synthetase I family

119

379

0.95

PF18152

DAHP_snth_FXD

DAHP synthase ferredoxin-like domain

45

114

0.88

PF03102

NeuB

NeuB family

177

383

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
1vs1-assembly1.cif.gz_B crystal structure of 3-deoxy-d-arabino-heptulosonate-7-phosphate synthase (dahp synthase) from aeropyrum pernix in complex with mn2+ and pep 0.9654 81 328
3pg8-assembly1.cif.gz_B truncated form of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase from thermotoga maritima 0.962 70 337
4c1k-assembly1.cif.gz_E crystal structure of pyrococcus furiosus 3-deoxy-d-arabino- heptulosonate 7-phosphate synthase 0.9596 73 329
5j6f-assembly1.cif.gz_A-2 crystal structure of dah7ps-cm complex from geobacillus sp. with prephenate 0.9592 70 330
4c1l-assembly1.cif.gz_A crystal structure of pyrococcus furiosus 3-deoxy-d-arabino- heptulosonate 7-phosphate synthase i181d interface mutant 0.9589 73 329
ID Description Score Start End Superfamily
3pg8A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9535 70 337 3.20.20.70
3pg8A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9359 70 337 3.20.20.70
3pg9A01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.8923 1 68 3.30.70.1140
1fwtA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8808 95 333 3.20.20.70
1o60D00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8735 81 335 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A7J4K246-F1-model_v4 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) 0.9824 248 338 GO:0003849
GO:0009058
AF-A0A3D5SIM3-F1-model_v4 3-deoxy-7-phosphoheptulonate synthase 0.9819 248 333 GO:0009058
AF-A0A399YPD3-F1-model_v4 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) 0.977 252 338 GO:0003849
GO:0009058
AF-A0A417IKT7-F1-model_v4 deleted 0.9761 247 338
AF-A0A2W5X7A0-F1-model_v4 3-deoxy-7-phosphoheptulonate synthase 0.9743 71 337 GO:0009073
GO:0016832

Feature Viewer

pLDDT pTM Quality
90.49 0.8 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map