F225446

General Info

Members Datasets Scaffolds Average Seq Length
156 116 155 483

Family's Representative Sequence

Representative Sequence 3300042184|Ga0450908_002062|Ga0450908_002062_390_1988
Length 532
Sequence MACRTAAASNGRGSPATRDSFARSRPDSMTTPRTVRPSGADTRPVPPERIRFANVAPVRPERAYVLYWMVAARRARANFALQRAVELAVELGRPLIVLEPLRVGYPWASDRLHAFVLQGMADNARAFARTPARYFPYVEARPGEGRGLLEALAANAAAVVTDDAPVSFLPRMIAAAAGRLDVRLEAVDGNGLHPLRAVDRVFTTAFSYRAHLQKTLRRHLDEVPLTNPLAGVRLPPAPGLDAVLSRWREAPPALLTGAADALAGLPIDHDVAPVPASGGAEAGRARLKAFVGRDLATYADDRHDPDDPRTSGLSPYLHFGHVSAHEVFDAVMTHEGWTRRRLATSGGGKREGWWGVARGAEAFLDQLVTWREIGFNAAAHLAGHDRYDTLPAWARTTLAAHARDPRPHRYDLDAFERAATHDPLWNAAQRELVRDGRIHTYLRMLWGKKILEWSRTPQDALETMIQLNDKYALDGRDPNSCSGIFWCLGRYDRPWGPERDIFGTVRYMSSENTARKLRVRGYLARYGPSSLP

Samples

Sample ID Description Type Environment
1 2687453341 Pirellula sp. SH-Sr6A Isolate Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
15 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
21 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
22 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
23 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
24 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
25 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
26 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
30 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
31 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
45 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
47 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
48 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
49 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
50 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
51 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
52 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
53 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
54 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
55 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
56 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
57 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
58 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
59 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
60 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
61 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
62 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
63 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
64 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
65 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
66 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
67 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
68 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
69 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
70 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
71 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
72 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
73 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
74 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
75 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
76 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
77 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
78 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
79 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
80 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
81 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
82 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
83 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
84 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
85 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
86 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
87 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
88 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
89 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
94 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
95 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
96 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
97 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
98 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
99 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
100 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
101 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
102 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
103 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
105 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
106 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
107 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
108 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
109 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
110 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
111 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
112 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
113 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
114 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
115 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
116 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.72
Metatranscriptomes 0.64
Isolates 0.64

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.46
Nodule 0
Rhizoplane 2.56
Rhizosphere 78.85
Stem 0
Stem Tuber 0
Unclassified 5.13

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10071060 3300003320 Bacteria 11809
2 Ga0070658_10039841 3300005327 Bacteria 3791
3 Ga0070683_100150410 3300005329 Bacteria 2207
4 Ga0068868_100077176 3300005338 Bacteria 2665
5 Ga0070689_100003768 3300005340 Bacteria 10151
6 Ga0070675_100056799 3300005354 Bacteria 3226
7 Ga0070675_100093018 3300005354 Bacteria 2528
8 Ga0070674_100007317 3300005356 Bacteria 6506
9 Ga0070674_100012849 3300005356 Bacteria 5155
10 Ga0070688_100024004 3300005365 Bacteria 3592
11 Ga0070663_100061508 3300005455 Bacteria 2704
12 Ga0070678_100000511 3300005456 Bacteria 18758
13 Ga0070679_100041529 3300005530 Bacteria 4577
14 Ga0070665_100000598 3300005548 Bacteria 50082
15 Ga0070665_100016273 3300005548 Bacteria 7462
16 Ga0070664_100004425 3300005564 Bacteria 11288
17 Ga0068854_100139861 3300005578 Bacteria 1856
18 Ga0068856_100093570 3300005614 Bacteria 2991
19 Ga0068864_100031640 3300005618 Bacteria 4491
20 Ga0068863_100038737 3300005841 Bacteria 4535
21 Ga0068863_100058803 3300005841 Bacteria 3638
22 Ga0068862_100177363 3300005844 Viruses 1911
23 Ga0075365_10033562 3300006038 Bacteria 3308
24 Ga0075364_10019269 3300006051 Bacteria 4281
25 Ga0075364_10092347 3300006051 Bacteria 2009
26 Ga0075367_10033569 3300006178 Bacteria 2959
27 Ga0075366_10011051 3300006195 Bacteria 5084
28 Ga0075366_10017847 3300006195 Bacteria 4092
29 Ga0075366_10020237 3300006195 Bacteria 3859
30 Ga0075366_10038081 3300006195 Bacteria 2840
31 Ga0075366_10074217 3300006195 Bacteria 2028
32 Ga0075370_10032095 3300006353 Bacteria 2934
33 Ga0075428_100127525 3300006844 Bacteria 2768
34 Ga0075428_100173387 3300006844 Bacteria 2337
35 Ga0111539_10000828 3300009094 Bacteria 40197
36 Ga0111539_10002170 3300009094 Bacteria 26233
37 Ga0111539_10014270 3300009094 Bacteria 9925
38 Ga0111539_10092203 3300009094 Bacteria 3560
39 Ga0105245_10079810 3300009098 Unclassified 2988
40 Ga0105248_10155824 3300009177 Bacteria 2577
41 Ga0105249_10001123 3300009553 Bacteria 23830
42 Ga0157377_10110386 3300014745 Viruses 1652
43 Ga0207697_10000133 3300025315 Bacteria 35922
44 Ga0207688_10007434 3300025901 Bacteria 5958
45 Ga0207705_10055586 3300025909 Bacteria 2854
46 Ga0207681_10001002 3300025923 Bacteria 18436
47 Ga0207650_10032254 3300025925 Bacteria 3789
48 Ga0207687_10079932 3300025927 Unclassified 2358
49 Ga0207670_10002378 3300025936 Bacteria 9855
50 Ga0207691_10010869 3300025940 Bacteria 8735
51 Ga0207651_10019543 3300025960 Bacteria 4063
52 Ga0207678_10030079 3300026067 Bacteria 4741
53 Ga0207678_10146425 3300026067 Bacteria 2016
54 Ga0207641_10044425 3300026088 Bacteria 3737
55 Ga0207674_10045015 3300026116 Bacteria 4542
56 Ga0207683_10219434 3300026121 Bacteria 1732
57 Ga0207428_10010239 3300027907 Bacteria 8379
58 Ga0268266_10000835 3300028379 Bacteria 40250
59 Ga0265319_1005072 3300028563 Bacteria 6394
60 Ga0265318_10000076 3300028577 Bacteria 94026
61 Ga0307515_10170082 3300028794 Bacteria 2177
62 Ga0265338_10013359 3300028800 Bacteria 9277
63 Ga0265320_10000031 3300031240 Bacteria 147045
64 Ga0265320_10005048 3300031240 Bacteria 8544
65 Ga0265325_10000395 3300031241 Bacteria 30923
66 Ga0265325_10004488 3300031241 Bacteria 8808
67 Ga0265329_10000227 3300031242 Bacteria 29823
68 Ga0265340_10022558 3300031247 Bacteria 3218
69 Ga0265339_10001938 3300031249 Bacteria 15212
70 Ga0265331_10000682 3300031250 Bacteria 29107
71 Ga0265331_10036474 3300031250 Bacteria 2413
72 Ga0265316_10004330 3300031344 Bacteria 14154
73 Ga0307509_10106581 3300031507 Bacteria 2821
74 Ga0307408_100015833 3300031548 Bacteria 5025
75 Ga0265313_10008469 3300031595 Bacteria 6822
76 Ga0316575_10023443 3300031665 Bacteria 2386
77 Ga0316579_10009048 3300031691 Bacteria 4179
78 Ga0265314_10002131 3300031711 Bacteria 20746
79 Ga0265314_10018012 3300031711 Bacteria 5523
80 Ga0265314_10081526 3300031711 Bacteria 2131
81 Ga0316578_10000122 3300031728 Bacteria 19112
82 Ga0307405_10052991 3300031731 Bacteria 2525
83 Ga0316577_10000144 3300031733 Bacteria 21624
84 Ga0316577_10028325 3300031733 Bacteria 3125
85 Ga0316577_10057385 3300031733 Bacteria 2173
86 Ga0307411_10189195 3300032005 Bacteria 1570
87 Ga0316580_10005173 3300032139 Bacteria 3797
88 Ga0316593_10030328 3300032168 Bacteria 1755
89 Ga0373929_0000002 3300035085 Bacteria 683932
90 Ga0373961_0002229 3300035241 Bacteria 5107
91 Ga0316582_0022252 3300036647 Bacteria 3761
92 Ga0316582_0054995 3300036647 Unclassified 2536
93 Ga0316582_0078584 3300036647 Bacteria 2150
94 Ga0316584_0003393 3300036712 Bacteria 10333
95 Ga0316584_0006547 3300036712 Bacteria 7891
96 Ga0395900_0044669 3300037418 Bacteria 4564
97 Ga0395905_0061135 3300037471 Bacteria 3523
98 Ga0395901_0032730 3300038443 Bacteria 5363
99 Ga0400489_82296 3300039093 Bacteria 13448
100 Ga0436365_0722228 3300039437 Bacteria 3054
101 Ga0451849_0355263 3300041505 Bacteria 7565
102 Ga0451853_0637315 3300041512 Bacteria 5009
103 Ga0450908_002062 3300042184 Bacteria 3928
104 Ga0451577_0207532 3300042876 Bacteria 1769
105 Ga0451577_0266201 3300042876 Bacteria 1552
106 Ga0453684_0001291 3300044712 Bacteria 74478
107 Ga0453684_0005383 3300044712 Bacteria 25425
108 Ga0453684_0029125 3300044712 Bacteria 7854
109 Ga0453684_0029584 3300044712 Bacteria 7771
110 Ga0453684_0099277 3300044712 Bacteria 3567
111 Ga0453684_0115117 3300044712 Unclassified 3258
112 Ga0495630_0018113 3300046517 Bacteria 5170
113 Ga0495672_0035285 3300047320 Bacteria 3081
114 Ga0495675_0021854 3300047444 Unclassified 4076
115 Ga0496105_0083205 3300048908 Bacteria 2643
116 Ga0496110_0039838 3300048913 Unclassified 4093
117 Ga0496114_0000038 3300048917 Bacteria 139215
118 Ga0496114_0034039 3300048917 Bacteria 4202
119 Ga0501034_0001997 3300049571 Bacteria 25805
120 Ga0501034_0005036 3300049571 Bacteria 14518
121 Ga0501034_0097975 3300049571 Bacteria 2928
122 Ga0501038_0143202 3300049574 Bacteria 1954
123 Ga0501042_0061906 3300049578 Bacteria 2673
124 Ga0501047_0006320 3300049581 Bacteria 11143
125 Ga0501067_0043518 3300049583 Bacteria 2494
126 Ga0501068_0049553 3300049584 Bacteria 2537
127 Ga0501072_0041953 3300049588 Bacteria 3594
128 Ga0501075_0001254 3300049591 Bacteria 16452
129 Ga0501075_0009837 3300049591 Bacteria 6702
130 Ga0501076_0056035 3300049592 Bacteria 3127
131 Ga0501077_0000136 3300049593 Bacteria 40352
132 Ga0501079_0012817 3300049741 Bacteria 6400
133 Ga0501080_0092034 3300049742 Bacteria 2816
134 Ga0501081_0020793 3300049743 Bacteria 4378
135 Ga0501083_0001174 3300049744 Bacteria 17661
136 Ga0501083_0018709 3300049744 Bacteria 4824
137 Ga0501044_0144112 3300049823 Bacteria 2369
138 Ga0501045_0103160 3300049824 Unclassified 2112
139 nmdc:mga00v17_89623_c1 3300050491 Bacteria 1930
140 nmdc:mga0k408_15739_c1 3300050493 Bacteria 4187
141 nmdc:mga0k408_21454_c1 3300050493 Bacteria 3628
142 nmdc:mga0k408_32276_c1 3300050493 Bacteria 2992
143 nmdc:mga0k408_6215_c1 3300050493 Bacteria 6372
144 nmdc:mga04h51_25123_c1 3300050495 Bacteria 1831
145 nmdc:mga07m45_2020_c1 3300050496 Bacteria 9409
146 nmdc:mga07m45_32947_c1 3300050496 Bacteria 2875
147 nmdc:mga0qj67_86002_c1 3300050509 Bacteria 2522
148 nmdc:mga06r32_324250_c1 3300050510 Bacteria 1525
149 nmdc:mga08y16_981_c1 3300050511 Bacteria 27786
150 Ga0500568_0011277 3300053139 Bacteria 4160
151 Ga0500616_0000286 3300053153 Bacteria 74130
152 Ga0500645_000150 3300053730 Bacteria 54398
153 Ga0501082_0000026 3300060353 Bacteria 101000
154 Ga0530510_0003636 3300061734 Bacteria 10612
155 Ga0530510_0017668 3300061734 Bacteria 5054

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300009094 Ga0111539_10014270 Ga0111539_100142701 421
2 3300044712 Ga0453684_0099277 Ga0453684_0099277_1104_2381 422
3 3300006844 Ga0075428_100173387 Ga0075428_1001733872 428
4 3300042876 Ga0451577_0207532 Ga0451577_0207532_115_1455 443
5 3300049823 Ga0501044_0144112 Ga0501044_0144112_1003_2334 443
6 3300005456 Ga0070678_100000511 Ga0070678_1000005113 444
7 3300031250 Ga0265331_10036474 Ga0265331_100364742 444
8 3300039437 Ga0436365_0722228 Ga0436365_0722228_321_1658 444
9 3300049578 Ga0501042_0061906 Ga0501042_0061906_1245_2639 444
10 3300042876 Ga0451577_0266201 Ga0451577_0266201_125_1471 445
11 3300044712 Ga0453684_0029584 Ga0453684_0029584_5318_6664 445
12 3300044712 Ga0453684_0115117 Ga0453684_0115117_704_2050 445
13 3300037418 Ga0395900_0044669 Ga0395900_0044669_2041_3384 446
14 3300038443 Ga0395901_0032730 Ga0395901_0032730_367_1710 446
15 3300048908 Ga0496105_0083205 Ga0496105_0083205_1119_2504 446
16 3300048917 Ga0496114_0000038 Ga0496114_0000038_58298_59683 446
17 3300049581 Ga0501047_0006320 Ga0501047_0006320_5898_7268 449
18 3300005340 Ga0070689_100003768 Ga0070689_1000037683 454
19 3300005548 Ga0070665_100016273 Ga0070665_1000162737 456
20 3300032005 Ga0307411_10189195 Ga0307411_101891951 457
21 3300050509 nmdc:mga0qj67_86002_c1 nmdc:mga0qj67_86002_c1_1064_2437 457
22 3300061734 Ga0530510_0017668 Ga0530510_0017668_1040_2512 457
23 3300049574 Ga0501038_0143202 Ga0501038_0143202_450_1940 458
24 3300006844 Ga0075428_100127525 Ga0075428_1001275251 460
25 3300050510 nmdc:mga06r32_324250_c1 nmdc:mga06r32_324250_c1_30_1490 460
26 3300050493 nmdc:mga0k408_21454_c1 nmdc:mga0k408_21454_c1_594_2051 461
27 3300005530 Ga0070679_100041529 Ga0070679_1000415293 462
28 3300005614 Ga0068856_100093570 Ga0068856_1000935702 462
29 3300044712 Ga0453684_0001291 Ga0453684_0001291_55907_57361 462
30 3300005327 Ga0070658_10039841 Ga0070658_100398413 464
31 3300025909 Ga0207705_10055586 Ga0207705_100555863 464
32 3300049571 Ga0501034_0005036 Ga0501034_0005036_9612_11006 464
33 3300053153 Ga0500616_0000286 Ga0500616_0000286_28629_30125 464
34 3300050493 nmdc:mga0k408_32276_c1 nmdc:mga0k408_32276_c1_218_1684 465
35 3300005365 Ga0070688_100024004 Ga0070688_1000240043 466
36 3300006195 Ga0075366_10038081 Ga0075366_100380811 467
37 3300049744 Ga0501083_0001174 Ga0501083_0001174_11090_12565 467
38 3300049591 Ga0501075_0001254 Ga0501075_0001254_13372_14781 468
39 3300049593 Ga0501077_0000136 Ga0501077_0000136_8715_10124 468
40 3300049742 Ga0501080_0092034 Ga0501080_0092034_54_1463 468
41 3300049824 Ga0501045_0103160 Ga0501045_0103160_53_1507 468
42 3300060353 Ga0501082_0000026 Ga0501082_0000026_11976_13385 468
43 3300025936 Ga0207670_10002378 Ga0207670_100023782 469
44 3300050496 nmdc:mga07m45_32947_c1 nmdc:mga07m45_32947_c1_1241_2698 469
45 3300049588 Ga0501072_0041953 Ga0501072_0041953_962_2452 470
46 3300049591 Ga0501075_0009837 Ga0501075_0009837_3018_4508 470
47 3300049592 Ga0501076_0056035 Ga0501076_0056035_266_1756 470
48 3300049741 Ga0501079_0012817 Ga0501079_0012817_4179_5669 470
49 3300049743 Ga0501081_0020793 Ga0501081_0020793_767_2257 470
50 3300049744 Ga0501083_0018709 Ga0501083_0018709_3054_4544 470
51 3300006051 Ga0075364_10019269 Ga0075364_100192691 472
52 3300006195 Ga0075366_10020237 Ga0075366_100202371 472
53 3300006353 Ga0075370_10032095 Ga0075370_100320952 472
54 3300046517 Ga0495630_0018113 Ga0495630_0018113_35_1489 472
55 3300050493 nmdc:mga0k408_6215_c1 nmdc:mga0k408_6215_c1_835_2301 472
56 3300050496 nmdc:mga07m45_2020_c1 nmdc:mga07m45_2020_c1_2633_4099 472
57 3300032168 Ga0316593_10030328 Ga0316593_100303281 474
58 3300026067 Ga0207678_10146425 Ga0207678_101464251 476
59 3300009094 Ga0111539_10000828 Ga0111539_1000082819 477
60 3300027907 Ga0207428_10010239 Ga0207428_100102395 477
61 3300031731 Ga0307405_10052991 Ga0307405_100529911 477
62 3300048917 Ga0496114_0034039 Ga0496114_0034039_1677_3110 477
63 3300050511 nmdc:mga08y16_981_c1 nmdc:mga08y16_981_c1_24212_25678 477
64 3300005329 Ga0070683_100150410 Ga0070683_1001504102 478
65 3300005578 Ga0068854_100139861 Ga0068854_1001398611 479
66 3300047320 Ga0495672_0035285 Ga0495672_0035285_1093_2553 480
67 3300053139 Ga0500568_0011277 Ga0500568_0011277_400_1860 480
68 3300005841 Ga0068863_100038737 Ga0068863_1000387374 481
69 3300026088 Ga0207641_10044425 Ga0207641_100444252 481
70 3300028794 Ga0307515_10170082 Ga0307515_101700822 481
71 3300031733 Ga0316577_10057385 Ga0316577_100573852 481
72 3300036647 Ga0316582_0022252 Ga0316582_0022252_1219_2748 481
73 3300036712 Ga0316584_0006547 Ga0316584_0006547_4833_6362 481
74 3300006195 Ga0075366_10017847 Ga0075366_100178472 482
75 3300009094 Ga0111539_10092203 Ga0111539_100922034 482
76 3300031665 Ga0316575_10023443 Ga0316575_100234431 482
77 3300049571 Ga0501034_0097975 Ga0501034_0097975_15_1478 484
78 3300005356 Ga0070674_100007317 Ga0070674_1000073172 485
79 3300044712 Ga0453684_0005383 Ga0453684_0005383_10501_11958 485
80 3300044712 Ga0453684_0029125 Ga0453684_0029125_532_1989 485
81 3300050493 nmdc:mga0k408_15739_c1 nmdc:mga0k408_15739_c1_2070_3527 485
82 3300050495 nmdc:mga04h51_25123_c1 nmdc:mga04h51_25123_c1_122_1579 485
83 3300025925 Ga0207650_10032254 Ga0207650_100322542 486
84 3300031548 Ga0307408_100015833 Ga0307408_1000158332 486
85 3300031728 Ga0316578_10000122 Ga0316578_1000012210 486
86 3300031733 Ga0316577_10000144 Ga0316577_100001449 486
87 3300032139 Ga0316580_10005173 Ga0316580_100051732 486
88 3300036647 Ga0316582_0078584 Ga0316582_0078584_240_1766 486
89 3300036712 Ga0316584_0003393 Ga0316584_0003393_7758_9284 486
90 3300031241 Ga0265325_10004488 Ga0265325_100044888 487
91 3300031711 Ga0265314_10081526 Ga0265314_100815262 487
92 3300049571 Ga0501034_0001997 Ga0501034_0001997_12582_14045 487
93 3300005338 Ga0068868_100077176 Ga0068868_1000771762 488
94 3300005354 Ga0070675_100093018 Ga0070675_1000930181 488
95 3300005564 Ga0070664_100004425 Ga0070664_1000044253 488
96 3300005841 Ga0068863_100058803 Ga0068863_1000588032 488
97 3300006038 Ga0075365_10033562 Ga0075365_100335622 488
98 3300006051 Ga0075364_10092347 Ga0075364_100923472 488
99 3300009177 Ga0105248_10155824 Ga0105248_101558242 488
100 3300025940 Ga0207691_10010869 Ga0207691_100108695 488
101 3300026067 Ga0207678_10030079 Ga0207678_100300791 488
102 3300028800 Ga0265338_10013359 Ga0265338_100133594 488
103 3300031241 Ga0265325_10000395 Ga0265325_1000039524 488
104 3300031249 Ga0265339_10001938 Ga0265339_100019383 488
105 3300031250 Ga0265331_10000682 Ga0265331_100006824 488
106 3300031595 Ga0265313_10008469 Ga0265313_100084692 488
107 3300031711 Ga0265314_10002131 Ga0265314_1000213111 488
108 3300035085 Ga0373929_0000002 Ga0373929_0000002_509983_511476 488
109 3300035241 Ga0373961_0002229 Ga0373961_0002229_2032_3522 488
110 3300050491 nmdc:mga00v17_89623_c1 nmdc:mga00v17_89623_c1_250_1716 488
111 3300031733 Ga0316577_10028325 Ga0316577_100283252 489
112 3300037471 Ga0395905_0061135 Ga0395905_0061135_1508_3028 489
113 3300006178 Ga0075367_10033569 Ga0075367_100335694 490
114 3300006195 Ga0075366_10011051 Ga0075366_100110514 490
115 3300039093 Ga0400489_82296 Ga0400489_82296_5372_6853 490
116 3300042184 Ga0450908_002062 Ga0450908_002062_390_1988 490
117 3300005354 Ga0070675_100056799 Ga0070675_1000567992 491
118 3300009098 Ga0105245_10079810 Ga0105245_100798102 491
119 3300009553 Ga0105249_10001123 Ga0105249_1000112317 491
120 3300014745 Ga0157377_10110386 Ga0157377_101103861 491
121 3300025927 Ga0207687_10079932 Ga0207687_100799321 491
122 3300053730 Ga0500645_000150 Ga0500645_000150_36622_38112 492
123 3300005844 Ga0068862_100177363 Ga0068862_1001773631 493
124 3300009094 Ga0111539_10002170 Ga0111539_100021709 493
125 3300026116 Ga0207674_10045015 Ga0207674_100450154 493
126 3300005548 Ga0070665_100000598 Ga0070665_10000059827 494
127 3300005618 Ga0068864_100031640 Ga0068864_1000316403 494
128 3300028379 Ga0268266_10000835 Ga0268266_1000083516 494
129 3300028563 Ga0265319_1005072 Ga0265319_10050725 494
130 3300028577 Ga0265318_10000076 Ga0265318_1000007654 494
131 3300031240 Ga0265320_10000031 Ga0265320_1000003124 494
132 3300031242 Ga0265329_10000227 Ga0265329_100002275 494
133 3300031247 Ga0265340_10022558 Ga0265340_100225583 494
134 3300031344 Ga0265316_10004330 Ga0265316_100043308 494
135 3300031711 Ga0265314_10018012 Ga0265314_100180125 494
136 3300005356 Ga0070674_100012849 Ga0070674_1000128494 496
137 3300006195 Ga0075366_10074217 Ga0075366_100742172 496
138 3300025315 Ga0207697_10000133 Ga0207697_1000013314 496
139 3300025901 Ga0207688_10007434 Ga0207688_100074346 496
140 3300025960 Ga0207651_10019543 Ga0207651_100195434 496
141 3300026121 Ga0207683_10219434 Ga0207683_102194341 496
142 3300041505 Ga0451849_0355263 Ga0451849_0355263_5213_6718 496
143 3300041512 Ga0451853_0637315 Ga0451853_0637315_802_2307 496
144 3300048913 Ga0496110_0039838 Ga0496110_0039838_1270_2763 496
145 3300049583 Ga0501067_0043518 Ga0501067_0043518_497_1987 496
146 3300049584 Ga0501068_0049553 Ga0501068_0049553_907_2397 496
147 3300061734 Ga0530510_0003636 Ga0530510_0003636_1013_2518 496
148 iso_pu_bacteria 2687453341 2688393880 496
149 3300025923 Ga0207681_10001002 Ga0207681_100010024 497
150 3300031691 Ga0316579_10009048 Ga0316579_100090482 497
151 3300036647 Ga0316582_0054995 Ga0316582_0054995_993_2504 497
152 3300047444 Ga0495675_0021854 Ga0495675_0021854_172_1749 498
153 3300005455 Ga0070663_100061508 Ga0070663_1000615081 499
154 3300031240 Ga0265320_10005048 Ga0265320_100050487 499
155 3300031507 Ga0307509_10106581 Ga0307509_101065812 499
156 3300003320 rootH2_10071060 rootH2_100710606 509

Structural Annotation

Top 5 Hits

ID Description Score Start End
7yek-assembly2.cif.gz_B tr-sfx mmcpdii-dna complex: 500 ns time-point collected in sacla. includes 500 ns, dark, and extrapolated structure factors 0.9312 3 490
8oy9-assembly2.cif.gz_B time-resolved sfx structure of the class ii photolyase complexed with a thymine dimer (1 microsecond pump-probe delay) 0.9269 7 489
7ycm-assembly2.cif.gz_B tr-sfx mmcpdii-dna complex: 100 ps snapshot. includes 100ps, dark, and extrapolated structure factors 0.9266 3 490
8oyb-assembly2.cif.gz_B time-resolved sfx structure of the class ii photolyase complexed with a thymine dimer (30 microsecond pump-probe delay) 0.9262 4 491
8oyb-assembly2.cif.gz_B time-resolved sfx structure of the class ii photolyase complexed with a thymine dimer (30 microsecond pump-probe delay) 0.922 4 491
ID Description Score Start End Superfamily
af_A0A1D6KCC6_330_425_1.10.579.10 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9702 351 437 1.10.579.10
af_A0A1D6GYW3_1_143_1.25.40.80 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.9416 239 293 1.25.40.80
af_Q8I0W8_927_1074_1.10.579.10 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9397 350 498 1.10.579.10
af_Q8I0W8_927_1074_1.10.579.10 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9275 350 498 1.10.579.10
1u3dA02 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.9175 238 292 1.25.40.80
ID Description Score Start End GO Terms
AF-A0A6N9A5S8-F1-model_v4 Deoxyribodipyrimidine photolyase 0.9931 27 187 GO:0000719
GO:0003904
AF-A0A7J4SCB9-F1-model_v4 Cryptochrome/DNA photolyase FAD-binding domain-containing protein 0.9927 323 491 GO:0000719
GO:0003904
AF-A0A3D4V2C6-F1-model_v4 Uncharacterized protein 0.9923 325 489 GO:0000719
GO:0003904
AF-A0A7W0VRM1-F1-model_v4 Deoxyribodipyrimidine photolyase 0.9885 367 490 GO:0000719
GO:0003904
AF-A0A6N8VV02-F1-model_v4 deleted 0.9883 347 492

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pLDDT pTM Quality
93.68 0.92 High
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Predicted Structure (AlphaFold2)

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