F225708

General Info

Members Datasets Scaffolds Average Seq Length
156 125 136 265

Family's Representative Sequence

Representative Sequence 3300048090|Ga0495615_0001018|Ga0495615_0001018_2510_3319
Length 269
Sequence MSCLAKNNVKVSGRPEGQPILFAHGFGCDQNMWRFVAPAFEEEHRVVLFDHVGAGGSDLAAYQPARYATLRGYADDVLAICRELDLRNLIFVGHSVSAMIGLLAALEEPERFAKLVLIGPSPRYIDDVDDVDGGDYLGGFSREDIDGLLESLDSNYLGWSSAMAPVIMGNPDRPALGEELTNSFCRTDPEIARHFARVTFLSDNRADLPHLTVPSLILQCAEDVIAPQAVGEYVHRQIPNSELVLLRATGHCPNLSAPEETIAAMRSFL

Samples

Sample ID Description Type Environment
1 2509276021 Rhizobium leguminosarum bv. trifolii WSM597 Isolate Nodule
2 2739367651 Pedobacter sp. OK291 Isolate Unclassified
3 2791355267 Rhizobium sp. L18 Isolate Nodule
4 2816332133 Acidovorax radicis 2721A Isolate Unclassified
5 2842341865 Rhizobium leguminosarum SEMIA 4011 Isolate Nodule
6 2842363717 Rhizobium leguminosarum SEMIA 4016 Isolate Nodule
7 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
8 2842747753 Variovorax sp. R-72060 Isolate Unclassified
9 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
10 2851182111 Bosea sp. Tri-44 Isolate Nodule
11 2855730933 Achromobacter sp. HZ28 Isolate Nodule
12 2855767633 Achromobacter sp. HZ34 Isolate Nodule
13 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
14 2917554339 Chthonobacter rhizosphaerae yh7-1 Isolate Rhizosphere
15 2945909444 Variovorax sp. CRF3-Va-1 W1I1 Isolate Rhizosphere
16 2945984333 Variovorax sp. W2I14 Isolate Rhizosphere
17 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
18 3007803356 Pseudomonas sp. CM27 Isolate Unclassified
19 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
20 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
21 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
22 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
23 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
24 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
25 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
26 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
27 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
28 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
29 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
30 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
31 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
32 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
33 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
34 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
35 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
36 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
37 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300012490 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.4.old.040610 Metagenome Rhizosphere
44 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
49 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
50 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
51 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
52 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
53 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
54 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
55 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
56 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
57 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
73 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
74 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
75 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
76 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
77 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
78 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
79 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
80 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
81 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
82 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
83 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
84 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
85 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
86 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
87 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
88 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
89 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
90 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
91 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
92 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
93 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
94 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
95 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
96 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
97 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
98 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
99 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
100 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
101 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
102 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
103 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
104 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
105 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
106 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
107 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
108 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
109 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
110 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
111 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
112 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
113 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
118 3300049769 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_B_4_drought Metagenome Rhizosphere
119 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
121 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
122 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
123 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
124 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
125 8056375014 Rhizobium redzepovicii 18T Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 85.9
Metatranscriptomes 1.28
Isolates 12.82

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.33
Nodule 5.13
Rhizoplane 5.77
Rhizosphere 71.15
Stem 0
Stem Tuber 0
Unclassified 9.62

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000184 3300003187 Bacteria 78223
2 JGI25151J46595_10000317 3300003187 Bacteria 52237
3 rootH2_10120754 3300003320 Bacteria 4944
4 rootH1_10007757 3300003323 Bacteria 42297
5 Ga0055540_1000164 3300003792 Bacteria 66539
6 Ga0070658_10099580 3300005327 Bacteria 2402
7 Ga0070683_100021668 3300005329 Bacteria 5737
8 Ga0070670_100221297 3300005331 Bacteria 1647
9 Ga0068869_100307881 3300005334 Bacteria 1281
10 Ga0070682_100049979 3300005337 Bacteria 2609
11 Ga0070660_100116025 3300005339 Bacteria 2135
12 Ga0070681_10021479 3300005458 Bacteria 6471
13 Ga0068867_100040193 3300005459 Bacteria 3411
14 Ga0070684_100083509 3300005535 Bacteria 2830
15 Ga0070665_100000185 3300005548 Bacteria 111130
16 Ga0070665_100108108 3300005548 Bacteria 2784
17 Ga0068855_100259083 3300005563 Bacteria 1938
18 Ga0068854_100055170 3300005578 Bacteria 2859
19 Ga0068856_100258966 3300005614 Bacteria 1755
20 Ga0068851_10237740 3300005834 Bacteria 1029
21 Ga0075370_10147624 3300006353 Bacteria 1377
22 Ga0105240_10078911 3300009093 Bacteria 4053
23 Ga0111539_10178984 3300009094 Unclassified 2477
24 Ga0105248_10147739 3300009177 Unclassified 2652
25 Ga0105238_10173558 3300009551 Bacteria 2132
26 Ga0105249_10790383 3300009553 Bacteria 1013
27 Ga0157322_1000267 3300012490 Bacteria 1692
28 Ga0157373_10143272 3300013100 Bacteria 1681
29 Ga0157369_10000006 3300013105 Bacteria 412230
30 Ga0157369_10259239 3300013105 Unclassified 1813
31 Ga0157374_10113646 3300013296 Bacteria 2606
32 Ga0157372_10007375 3300013307 Bacteria 11701
33 Ga0157372_10146346 3300013307 Bacteria 2724
34 Ga0182008_10000176 3300014497 Bacteria 50017
35 Ga0182008_10005582 3300014497 Bacteria 7140
36 Ga0182007_10000058 3300015262 Bacteria 89490
37 Ga0163161_10000138 3300017792 Bacteria 68614
38 Ga0163161_10000332 3300017792 Bacteria 40315
39 Ga0163161_10004330 3300017792 Bacteria 9894
40 Ga0206356_10717113 3300020070 Bacteria 1734
41 Ga0206353_11525925 3300020082 Bacteria 5258
42 Ga0213876_10216160 3300021384 Bacteria 1019
43 Ga0207425_1019999 3300025245 Bacteria 1436
44 Ga0209673_1003321 3300025273 Bacteria 9622
45 Ga0209025_1000019 3300025294 Bacteria 631548
46 Ga0209025_1000029 3300025294 Bacteria 488571
47 Ga0209050_1003685 3300025298 Bacteria 11049
48 Ga0209051_1000070 3300025303 Bacteria 215616
49 Ga0207645_10008938 3300025907 Bacteria 6957
50 Ga0207705_10103485 3300025909 Bacteria 2097
51 Ga0207695_10296846 3300025913 Bacteria 1507
52 Ga0207657_10056854 3300025919 Bacteria 3373
53 Ga0207694_10501788 3300025924 Bacteria 1016
54 Ga0207650_10110292 3300025925 Bacteria 2129
55 Ga0207670_10222784 3300025936 Bacteria 1445
56 Ga0207711_10085876 3300025941 Unclassified 2758
57 Ga0207661_10001055 3300025944 Bacteria 18320
58 Ga0207661_10181462 3300025944 Bacteria 1839
59 Ga0207661_10432297 3300025944 Bacteria 1197
60 Ga0207677_10016345 3300026023 Bacteria 4392
61 Ga0207702_10216990 3300026078 Bacteria 1781
62 Ga0207648_10015253 3300026089 Bacteria 7067
63 Ga0268266_10000345 3300028379 Bacteria 72371
64 Ga0268266_10012247 3300028379 Bacteria 7420
65 Ga0307512_10178359 3300030522 Bacteria 1200
66 Ga0265327_10000565 3300031251 Bacteria 63101
67 Ga0307408_100064045 3300031548 Bacteria 2692
68 Ga0307405_10000050 3300031731 Bacteria 62527
69 Ga0307406_10403985 3300031901 Bacteria 1084
70 Ga0307407_10000017 3300031903 Bacteria 136012
71 Ga0307407_10183351 3300031903 Bacteria 1389
72 Ga0307412_10006599 3300031911 Bacteria 6569
73 Ga0307409_100002120 3300031995 Bacteria 10214
74 Ga0307409_100054557 3300031995 Bacteria 3079
75 Ga0307416_100000011 3300032002 Bacteria 300622
76 Ga0307416_100212348 3300032002 Bacteria 1847
77 Ga0307416_101027318 3300032002 Bacteria 928
78 Ga0307414_10001667 3300032004 Bacteria 11549
79 Ga0307414_10070745 3300032004 Unclassified 2513
80 Ga0307411_10234421 3300032005 Bacteria 1433
81 Ga0307411_10271368 3300032005 Bacteria 1345
82 Ga0395900_0000967 3300037418 Bacteria 37355
83 Ga0395900_0195755 3300037418 Bacteria 2048
84 Ga0395898_0001366 3300037466 Bacteria 35104
85 Ga0395898_0398835 3300037466 Bacteria 1312
86 Ga0395905_0133985 3300037471 Bacteria 2330
87 Ga0436365_1468089 3300039437 Bacteria 3234
88 Ga0451791_1748984 3300041451 Bacteria 1696
89 Ga0451802_0584505 3300041460 Bacteria 2792
90 Ga0451807_1932343 3300041486 Bacteria 1251
91 Ga0451833_0426514 3300041491 Bacteria 1304
92 Ga0451833_0897131 3300041491 Bacteria 4403
93 Ga0451853_3540354 3300041512 Bacteria 1979
94 Ga0466965_0055367 3300044683 Bacteria 1974
95 Ga0466966_0004783 3300044684 Bacteria 8909
96 Ga0466966_0024373 3300044684 Bacteria 3958
97 Ga0466966_0026412 3300044684 Bacteria 3790
98 Ga0466966_0172488 3300044684 Bacteria 1314
99 Ga0466961_0020743 3300044693 Bacteria 4229
100 Ga0466961_0034968 3300044693 Bacteria 3226
101 Ga0466963_0058886 3300044694 Bacteria 2563
102 Ga0466964_0242564 3300044706 Bacteria 885
103 Ga0466971_0118206 3300044719 Bacteria 1226
104 Ga0466970_0029012 3300044765 Bacteria 2910
105 Ga0466957_0007304 3300044842 Bacteria 6243
106 Ga0466960_0048009 3300044901 Bacteria 2050
107 Ga0466959_0005744 3300045049 Bacteria 8536
108 Ga0466958_0075630 3300045836 Bacteria 2066
109 Ga0466958_0179955 3300045836 Bacteria 1341
110 Ga0466967_0084432 3300045976 Bacteria 2873
111 Ga0466967_0157021 3300045976 Bacteria 2132
112 Ga0495616_0001711 3300046513 Bacteria 14965
113 Ga0495671_0013548 3300046692 Bacteria 4408
114 Ga0495615_0001018 3300048090 Bacteria 3992
115 Ga0495615_0021398 3300048090 Bacteria 1459
116 Ga0496105_0490185 3300048908 Bacteria 966
117 Ga0496107_0014395 3300048910 Bacteria 5539
118 Ga0496108_0111145 3300048911 Bacteria 2343
119 Ga0496110_0075896 3300048913 Bacteria 2987
120 Ga0496111_0114455 3300048914 Bacteria 1988
121 Ga0496113_0092816 3300048916 Bacteria 2329
122 Ga0501043_0001073 3300049579 Bacteria 24039
123 Ga0501046_0001270 3300049580 Bacteria 24446
124 Ga0501046_0021506 3300049580 Bacteria 5323
125 Ga0501047_0001355 3300049581 Bacteria 24065
126 Ga0501047_0368086 3300049581 Bacteria 1272
127 Ga0501048_0231490 3300049582 Bacteria 1311
128 Ga0501238_001189 3300049671 Bacteria 2973
129 Ga0501272_017699 3300049769 Bacteria 840
130 Ga0501044_0243110 3300049823 Bacteria 1743
131 Ga0501045_0001923 3300049824 Bacteria 14013
132 nmdc:mga0k408_52095_c1 3300050493 Bacteria 2372
133 Ga0500556_0000371 3300053104 Bacteria 32723
134 Ga0500607_009490 3300053121 Bacteria 5852
135 Ga0466962_0039957 3300061719 Bacteria 2246
136 Ga0466962_0091420 3300061719 Bacteria 1458

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049769 Ga0501272_017699 Ga0501272_017699_100_813 237
2 3300044684 Ga0466966_0172488 Ga0466966_0172488_455_1195 246
3 3300045836 Ga0466958_0179955 Ga0466958_0179955_414_1154 246
4 3300061719 Ga0466962_0039957 Ga0466962_0039957_286_1026 246
5 3300044694 Ga0466963_0058886 Ga0466963_0058886_342_1085 247
6 iso_pu_bacteria 2945984333 2945987162 248
7 3300017792 Ga0163161_10000332 Ga0163161_1000033219 252
8 3300017792 Ga0163161_10004330 Ga0163161_100043307 252
9 3300025919 Ga0207657_10056854 Ga0207657_100568542 252
10 3300031911 Ga0307412_10006599 Ga0307412_100065995 252
11 3300041486 Ga0451807_1932343 Ga0451807_1932343_456_1226 252
12 3300046692 Ga0495671_0013548 Ga0495671_0013548_1501_2271 252
13 3300037471 Ga0395905_0133985 Ga0395905_0133985_1267_2037 255
14 3300053104 Ga0500556_0000371 Ga0500556_0000371_30743_31564 256
15 iso_pu_bacteria 2851182111 2851186275 258
16 3300005339 Ga0070660_100116025 Ga0070660_1001160253 259
17 3300005458 Ga0070681_10021479 Ga0070681_100214794 259
18 3300005535 Ga0070684_100083509 Ga0070684_1000835093 259
19 3300005548 Ga0070665_100000185 Ga0070665_10000018564 259
20 3300009093 Ga0105240_10078911 Ga0105240_100789112 259
21 3300020070 Ga0206356_10717113 Ga0206356_107171132 259
22 3300020082 Ga0206353_11525925 Ga0206353_115259254 259
23 3300025936 Ga0207670_10222784 Ga0207670_102227842 259
24 3300025944 Ga0207661_10001055 Ga0207661_100010557 259
25 3300025944 Ga0207661_10181462 Ga0207661_101814622 259
26 3300028379 Ga0268266_10000345 Ga0268266_1000034540 259
27 3300044683 Ga0466965_0055367 Ga0466965_0055367_175_963 259
28 3300044684 Ga0466966_0004783 Ga0466966_0004783_1303_2094 259
29 3300044684 Ga0466966_0024373 Ga0466966_0024373_1008_1799 259
30 3300044684 Ga0466966_0026412 Ga0466966_0026412_1341_2129 259
31 3300044693 Ga0466961_0020743 Ga0466961_0020743_1007_1795 259
32 3300044693 Ga0466961_0034968 Ga0466961_0034968_2137_2928 259
33 3300044706 Ga0466964_0242564 Ga0466964_0242564_30_818 259
34 3300044719 Ga0466971_0118206 Ga0466971_0118206_335_1120 259
35 3300044765 Ga0466970_0029012 Ga0466970_0029012_248_1036 259
36 3300044842 Ga0466957_0007304 Ga0466957_0007304_3052_3843 259
37 3300044901 Ga0466960_0048009 Ga0466960_0048009_1143_1931 259
38 3300045049 Ga0466959_0005744 Ga0466959_0005744_1017_1808 259
39 3300045836 Ga0466958_0075630 Ga0466958_0075630_584_1375 259
40 3300045976 Ga0466967_0157021 Ga0466967_0157021_266_1054 259
41 3300048090 Ga0495615_0001018 Ga0495615_0001018_2510_3319 259
42 3300048090 Ga0495615_0021398 Ga0495615_0021398_569_1357 259
43 3300061719 Ga0466962_0091420 Ga0466962_0091420_433_1218 259
44 3300013307 Ga0157372_10007375 Ga0157372_100073758 260
45 3300031995 Ga0307409_100002120 Ga0307409_1000021201 260
46 iso_pu_bacteria 2739367651 2739591520 260
47 iso_pu_bacteria 2842722452 2842722774 260
48 iso_pu_bacteria 2842909656 2842913394 260
49 iso_pu_bacteria 2904780799 2904784970 260
50 3300031731 Ga0307405_10000050 Ga0307405_100000505 261
51 3300031903 Ga0307407_10000017 Ga0307407_1000001776 261
52 3300031903 Ga0307407_10183351 Ga0307407_101833512 261
53 3300032002 Ga0307416_100000011 Ga0307416_100000011121 261
54 3300032004 Ga0307414_10001667 Ga0307414_100016678 261
55 3300032004 Ga0307414_10070745 Ga0307414_100707452 261
56 3300032005 Ga0307411_10234421 Ga0307411_102344211 261
57 3300032005 Ga0307411_10271368 Ga0307411_102713682 261
58 3300037418 Ga0395900_0000967 Ga0395900_0000967_34303_35094 261
59 3300037466 Ga0395898_0001366 Ga0395898_0001366_2273_3064 261
60 3300041451 Ga0451791_1748984 Ga0451791_1748984_521_1324 261
61 3300041491 Ga0451833_0426514 Ga0451833_0426514_382_1185 261
62 3300045976 Ga0466967_0084432 Ga0466967_0084432_1509_2306 261
63 iso_pu_bacteria 2954016120 2954016859 261
64 3300005329 Ga0070683_100021668 Ga0070683_1000216683 262
65 3300005563 Ga0068855_100259083 Ga0068855_1002590832 262
66 3300009177 Ga0105248_10147739 Ga0105248_101477392 262
67 3300013100 Ga0157373_10143272 Ga0157373_101432722 262
68 3300013105 Ga0157369_10000006 Ga0157369_1000000620 262
69 3300013105 Ga0157369_10259239 Ga0157369_102592392 262
70 3300013296 Ga0157374_10113646 Ga0157374_101136462 262
71 3300015262 Ga0182007_10000058 Ga0182007_1000005864 262
72 3300017792 Ga0163161_10000138 Ga0163161_1000013830 262
73 3300025941 Ga0207711_10085876 Ga0207711_100858762 262
74 iso_pu_bacteria 2509276021 2509386352 262
75 iso_pu_bacteria 2842363717 2842368070 262
76 3300003320 rootH2_10120754 rootH2_101207542 263
77 3300003323 rootH1_10007757 rootH1_1000775726 263
78 3300003792 Ga0055540_1000164 Ga0055540_100016428 263
79 3300005331 Ga0070670_100221297 Ga0070670_1002212972 263
80 3300009094 Ga0111539_10178984 Ga0111539_101789842 263
81 3300009551 Ga0105238_10173558 Ga0105238_101735582 263
82 3300012490 Ga0157322_1000267 Ga0157322_10002672 263
83 3300021384 Ga0213876_10216160 Ga0213876_102161602 263
84 3300025273 Ga0209673_1003321 Ga0209673_10033219 263
85 3300025298 Ga0209050_1003685 Ga0209050_10036857 263
86 3300025303 Ga0209051_1000070 Ga0209051_100007096 263
87 3300025924 Ga0207694_10501788 Ga0207694_105017882 263
88 3300025925 Ga0207650_10110292 Ga0207650_101102922 263
89 3300039437 Ga0436365_1468089 Ga0436365_1468089_448_1284 263
90 3300041512 Ga0451853_3540354 Ga0451853_3540354_849_1649 263
91 3300049580 Ga0501046_0021506 Ga0501046_0021506_2100_2903 263
92 3300049581 Ga0501047_0368086 Ga0501047_0368086_134_937 263
93 3300049582 Ga0501048_0231490 Ga0501048_0231490_477_1280 263
94 iso_pu_bacteria 2791355267 2793368363 263
95 iso_pu_bacteria 2816332133 2816474369 263
96 iso_pu_bacteria 2842341865 2842346245 263
97 iso_pu_bacteria 8056375014 8056376484 263
98 3300005459 Ga0068867_100040193 Ga0068867_1000401933 264
99 3300005548 Ga0070665_100108108 Ga0070665_1001081083 264
100 3300005578 Ga0068854_100055170 Ga0068854_1000551702 264
101 3300005614 Ga0068856_100258966 Ga0068856_1002589662 264
102 3300005834 Ga0068851_10237740 Ga0068851_102377401 264
103 3300006353 Ga0075370_10147624 Ga0075370_101476242 264
104 3300025907 Ga0207645_10008938 Ga0207645_100089386 264
105 3300026023 Ga0207677_10016345 Ga0207677_100163453 264
106 3300026078 Ga0207702_10216990 Ga0207702_102169902 264
107 3300026089 Ga0207648_10015253 Ga0207648_100152536 264
108 3300030522 Ga0307512_10178359 Ga0307512_101783592 264
109 3300031548 Ga0307408_100064045 Ga0307408_1000640452 264
110 3300031901 Ga0307406_10403985 Ga0307406_104039851 264
111 3300037418 Ga0395900_0195755 Ga0395900_0195755_280_1086 264
112 3300037466 Ga0395898_0398835 Ga0395898_0398835_222_1028 264
113 3300041460 Ga0451802_0584505 Ga0451802_0584505_1571_2374 264
114 3300041491 Ga0451833_0897131 Ga0451833_0897131_1318_2121 264
115 3300046513 Ga0495616_0001711 Ga0495616_0001711_7882_8685 264
116 3300049579 Ga0501043_0001073 Ga0501043_0001073_10570_11373 264
117 3300049580 Ga0501046_0001270 Ga0501046_0001270_10607_11410 264
118 3300049581 Ga0501047_0001355 Ga0501047_0001355_12684_13487 264
119 3300049823 Ga0501044_0243110 Ga0501044_0243110_228_1031 264
120 3300049824 Ga0501045_0001923 Ga0501045_0001923_2619_3422 264
121 3300050493 nmdc:mga0k408_52095_c1 nmdc:mga0k408_52095_c1_973_1776 264
122 iso_pu_bacteria 2842747753 2842753131 264
123 3300005327 Ga0070658_10099580 Ga0070658_100995804 265
124 3300014497 Ga0182008_10000176 Ga0182008_1000017614 265
125 3300031251 Ga0265327_10000565 Ga0265327_1000056517 265
126 iso_pu_bacteria 3007803356 3007805858 265
127 3300005337 Ga0070682_100049979 Ga0070682_1000499791 266
128 3300009553 Ga0105249_10790383 Ga0105249_107903831 266
129 3300013307 Ga0157372_10146346 Ga0157372_101463462 266
130 3300025944 Ga0207661_10432297 Ga0207661_104322972 266
131 3300031995 Ga0307409_100054557 Ga0307409_1000545572 266
132 3300048908 Ga0496105_0490185 Ga0496105_0490185_119_931 266
133 3300048910 Ga0496107_0014395 Ga0496107_0014395_3447_4259 266
134 3300048911 Ga0496108_0111145 Ga0496108_0111145_1461_2273 266
135 3300048913 Ga0496110_0075896 Ga0496110_0075896_1329_2141 266
136 3300048914 Ga0496111_0114455 Ga0496111_0114455_801_1613 266
137 3300048916 Ga0496113_0092816 Ga0496113_0092816_1328_2140 266
138 iso_pu_bacteria 2842747753 2842751819 266
139 iso_pu_bacteria 2855730933 2855736676 266
140 iso_pu_bacteria 2855767633 2855773613 266
141 iso_pu_bacteria 2945909444 2945910666 266
142 3300003187 JGI25151J46595_10000184 JGI25151J46595_100001848 267
143 3300003187 JGI25151J46595_10000317 JGI25151J46595_1000031733 267
144 3300005334 Ga0068869_100307881 Ga0068869_1003078812 267
145 3300014497 Ga0182008_10005582 Ga0182008_100055822 267
146 3300025245 Ga0207425_1019999 Ga0207425_10199992 267
147 3300025294 Ga0209025_1000019 Ga0209025_1000019420 267
148 3300025294 Ga0209025_1000029 Ga0209025_1000029132 267
149 3300025909 Ga0207705_10103485 Ga0207705_101034852 267
150 3300025913 Ga0207695_10296846 Ga0207695_102968462 267
151 3300028379 Ga0268266_10012247 Ga0268266_100122472 267
152 3300032002 Ga0307416_100212348 Ga0307416_1002123481 267
153 3300032002 Ga0307416_101027318 Ga0307416_1010273181 267
154 3300049671 Ga0501238_001189 Ga0501238_001189_1406_2221 267
155 3300053121 Ga0500607_009490 Ga0500607_009490_4802_5641 267
156 iso_pu_bacteria 2917554339 2917557585 267

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03096

Ndr

Ndr family

3

129

0.87

PF12146

Hydrolase_4

Serine aminopeptidase, S33

15

136

0.87

PF00561

Abhydrolase_1

alpha/beta hydrolase fold

18

258

0.79

PF12697

Abhydrolase_6

Alpha/beta hydrolase family

20

264

0.7

Structural Annotation

Top 5 Hits

ID Description Score Start End
1wom-assembly2.cif.gz_B crystal structure of rsbq 0.9757 3 260
3qvm-assembly1.cif.gz_A the structure of olei00960, a hydrolase from oleispira antarctica 0.9699 3 261
1wpr-assembly2.cif.gz_B crystal structure of rsbq inhibited by pmsf 0.9652 3 260
1wpr-assembly1.cif.gz_A crystal structure of rsbq inhibited by pmsf 0.9635 3 260
6azd-assembly1.cif.gz_A crystal structure of physcomitrella patens kai2-like h 0.9621 3 258
ID Description Score Start End Superfamily
1wprB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9652 3 260 3.40.50.1820
af_I1JQE4_7_273_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9641 3 259 3.40.50.1820
af_Q9LK01_7_272_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9629 3 259 3.40.50.1820
af_B6TRW7_40_307_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9622 3 260 3.40.50.1820
af_A0A1D6PYN0_10_142_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9541 117 243 3.40.50.1820
ID Description Score Start End GO Terms
AF-A0A3R8VEB3-F1-model_v4 deleted 1 2 114
AF-A0A379KXR8-F1-model_v4 deleted 0.9943 3 262
AF-A0A1H3UUT4-F1-model_v4 deleted 0.9942 2 262
AF-A0A699JBE5-F1-model_v4 Uncharacterized protein 0.9938 2 222 GO:0000155
GO:0009881
AF-A0A6I6Y7L7-F1-model_v4 Alpha/beta hydrolase 0.9928 2 262 GO:0016787

Feature Viewer

pLDDT pTM Quality
93.08 0.92 High
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Predicted Structure (AlphaFold2)

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