F225975

General Info

Members Datasets Scaffolds Average Seq Length
156 122 312 469

Family's Representative Sequence

Representative Sequence 3300053139|Ga0500568_0000176|Ga0500568_0000176_7673_9205
Length 510
Sequence MMGAPDRIVPASGTNPGSLASLSSFRRHREVIVAANPLAPEWLIEPGDANELAPAVWSRHVDRAASGALRIAGVAAPALHAAYGTPLYVIDEDDARSRANAIRDAFSSAFGRHGAHTTVYYAGKAFLSIEVARWMIDAGLNLDVCSGGELAVALAADIDPRRLGFHGNNKSLAEIDQAVEVGVGAIVLDSVVEIDRVADAAERHGRHQNVRLRINSGVHASTHEYLATAREDQKFGIPLADAEAAVAAIRARPGLRFLGLHSHIGSQIFESAGFAEAARRLLEVHARLLAGGEVPELNLGGGFGIAYTSVDEVAPIETIAHELAEVVAAECGRLGIPVPAVAIEPGRAIIGPAGLTLYEVGTVKDVRVDETAVRRYVSVDGGMSDNLRTALYKAEYAVRIANRVSDAEPALVRVAGKHCESGDIVVQNDYLPGDVRPGDLLAVPATGAYCWSLSSNYNYLGRPAVVAVRDGHSRVLVRRETEYDLLRRDSGYSSGAEEIDAHPTHRSDLT

Samples

Sample ID Description Type Environment
1 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
2 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
3 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
11 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
12 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
13 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
14 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
15 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
16 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
17 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
18 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
19 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
20 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
21 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
22 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
23 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
24 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
25 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
26 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
27 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
28 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
29 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
31 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
50 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
51 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
52 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
53 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
54 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
55 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
56 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
57 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
58 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
59 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
60 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
61 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
62 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
63 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
64 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
65 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
66 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
72 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
76 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
77 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
78 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
79 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
80 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
81 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
83 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
84 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
85 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
86 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
87 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
88 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
89 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
90 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
91 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
92 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
93 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
94 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
95 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
96 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
97 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
98 2808606372 Agromyces sp. 23-23 Isolate Unclassified
99 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
100 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
101 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
102 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
103 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
104 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
105 2897561785 Pseudoclavibacter endophyticus EGI 60007 Isolate Unclassified
106 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
107 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
108 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
109 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
110 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
111 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
112 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
113 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
114 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
115 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
116 2946024296 Arthrobacter woluwensis W4I2 Isolate Rhizosphere
117 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
118 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
119 2984551494 Curtobacterium sp. SORGH_AS776 Isolate Aerial Root
120 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
121 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
122 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.69
Metatranscriptomes 0
Isolates 17.31

Biome Distribution

Category Percentage (%)
Aerial Root 0.64
Bulb 0
Endosphere 18.59
Nodule 0
Rhizoplane 0
Rhizosphere 66.67
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500568_0000176 3300053139 Bacteria 55879
2 JGI25164J39214_1000432 3300002772 Bacteria 22983
3 JGI25165J46597_1000142 3300003214 Bacteria 119146
4 rootL2_10154252 3300003322 Bacteria 3899
5 Ga0070658_10000162 3300005327 Bacteria 58038
6 Ga0070658_10029260 3300005327 Bacteria 4425
7 Ga0070671_100064420 3300005355 Bacteria 3052
8 Ga0070659_100057523 3300005366 Bacteria 3067
9 Ga0070667_100010416 3300005367 Bacteria 7674
10 Ga0070708_100186637 3300005445 Bacteria 1939
11 Ga0070678_100150088 3300005456 Bacteria 1876
12 Ga0068853_100115889 3300005539 Bacteria 2385
13 Ga0068855_100091474 3300005563 Bacteria 3509
14 Ga0068857_100000330 3300005577 Bacteria 32633
15 Ga0068852_100015629 3300005616 Bacteria 5895
16 Ga0068852_100022441 3300005616 Bacteria 5062
17 Ga0068851_10000005 3300005834 Bacteria 262808
18 Ga0068858_100000058 3300005842 Bacteria 117238
19 Ga0075365_10015452 3300006038 Bacteria 4619
20 Ga0105240_10088450 3300009093 Bacteria 3790
21 Ga0105240_10166750 3300009093 Bacteria 2612
22 Ga0105245_10025597 3300009098 Bacteria 5189
23 Ga0105241_10000322 3300009174 Bacteria 36168
24 Ga0105248_10245995 3300009177 Bacteria 2013
25 Ga0105237_10000464 3300009545 Bacteria 57468
26 Ga0105237_10111204 3300009545 Bacteria 2731
27 Ga0105238_10027191 3300009551 Bacteria 5829
28 Ga0105239_10328471 3300010375 Bacteria 1725
29 Ga0157371_10008359 3300013102 Bacteria 8254
30 Ga0157370_10011205 3300013104 Bacteria 9403
31 Ga0207427_100099 3300025231 Bacteria 121767
32 Ga0209437_100535 3300025233 Bacteria 26406
33 Ga0209148_1000401 3300025254 Bacteria 50504
34 Ga0209233_1000001 3300025261 Bacteria 2992747
35 Ga0207656_10000001 3300025321 Bacteria 1323684
36 Ga0207656_10000003 3300025321 Bacteria 771644
37 Ga0207656_10000004 3300025321 Bacteria 632320
38 Ga0207705_10000001 3300025909 Bacteria 2061880
39 Ga0207654_10000003 3300025911 Bacteria 1030378
40 Ga0207695_10007488 3300025913 Bacteria 13869
41 Ga0207671_10000001 3300025914 Bacteria 1318881
42 Ga0207671_10069053 3300025914 Bacteria 2634
43 Ga0207694_10000066 3300025924 Bacteria 128281
44 Ga0207687_10041896 3300025927 Bacteria 3147
45 Ga0207690_10003781 3300025932 Bacteria 8963
46 Ga0207690_10059929 3300025932 Bacteria 2580
47 Ga0207691_10030161 3300025940 Bacteria 5069
48 Ga0207711_10003893 3300025941 Bacteria 12844
49 Ga0207667_10003862 3300025949 Bacteria 18433
50 Ga0207703_10000026 3300026035 Bacteria 211591
51 Ga0207678_10065732 3300026067 Bacteria 3114
52 Ga0207702_10148695 3300026078 Bacteria 2128
53 Ga0207674_10005041 3300026116 Bacteria 15765
54 Ga0207675_100113218 3300026118 Bacteria 2562
55 Ga0207683_10220129 3300026121 Bacteria 1729
56 Ga0207698_10002420 3300026142 Bacteria 11044
57 Ga0466972_0042043 3300044658 Bacteria 2224
58 Ga0466965_0000012 3300044683 Bacteria 100611
59 Ga0466963_0000256 3300044694 Bacteria 23361
60 Ga0466970_0001808 3300044765 Bacteria 10310
61 Ga0466970_0022195 3300044765 Bacteria 3313
62 Ga0466960_0014268 3300044901 Bacteria 3397
63 Ga0466967_0242758 3300045976 Bacteria 1719
64 Ga0495590_0000103 3300046457 Bacteria 50735
65 Ga0495650_0001048 3300046471 Bacteria 30777
66 Ga0495672_0006160 3300047320 Bacteria 9356
67 Ga0496117_0009275 3300048920 Bacteria 9195
68 Ga0496117_0009373 3300048920 Bacteria 9116
69 Ga0496118_0000089 3300048921 Bacteria 175942
70 Ga0496119_0001228 3300048922 Bacteria 31914
71 Ga0496119_0008440 3300048922 Bacteria 9048
72 Ga0496119_0023672 3300048922 Bacteria 4345
73 Ga0496120_0012524 3300048923 Bacteria 5769
74 Ga0496121_0000040 3300048924 Bacteria 348494
75 Ga0496122_0003729 3300048925 Bacteria 19668
76 Ga0496123_0003907 3300048926 Bacteria 16199
77 Ga0496123_0034898 3300048926 Bacteria 3595
78 Ga0496123_0096616 3300048926 Bacteria 1734
79 Ga0496124_0000037 3300048927 Bacteria 317430
80 Ga0496124_0001961 3300048927 Bacteria 28116
81 Ga0501031_0129535 3300049568 Bacteria 1648
82 Ga0501032_0084633 3300049569 Bacteria 2108
83 Ga0501033_0007346 3300049570 Bacteria 8583
84 Ga0501033_0137258 3300049570 Bacteria 1769
85 Ga0501034_0004948 3300049571 Bacteria 14666
86 Ga0501034_0006906 3300049571 Bacteria 12132
87 Ga0501034_0012979 3300049571 Bacteria 8587
88 Ga0501034_0057001 3300049571 Bacteria 3929
89 Ga0501034_0136270 3300049571 Bacteria 2436
90 Ga0501034_0161595 3300049571 Bacteria 2210
91 Ga0501037_0064634 3300049573 Bacteria 2666
92 Ga0501038_0024724 3300049574 Bacteria 5355
93 Ga0501039_0211603 3300049575 Bacteria 1525
94 Ga0501043_0008683 3300049579 Bacteria 7995
95 Ga0501043_0036081 3300049579 Bacteria 3889
96 Ga0501047_0005582 3300049581 Bacteria 11843
97 Ga0501047_0017324 3300049581 Bacteria 6899
98 Ga0501070_0003131 3300049586 Bacteria 14404
99 Ga0501070_0011506 3300049586 Bacteria 7473
100 Ga0501070_0028428 3300049586 Bacteria 4689
101 Ga0501071_0000167 3300049587 Bacteria 28392
102 Ga0501072_0010589 3300049588 Bacteria 7023
103 Ga0501073_0000383 3300049589 Bacteria 29939
104 Ga0501080_0000057 3300049742 Bacteria 72729
105 Ga0501080_0036890 3300049742 Bacteria 4563
106 Ga0501083_0150058 3300049744 Bacteria 1526
107 Ga0501035_0001689 3300049822 Bacteria 22341
108 Ga0501044_0001143 3300049823 Bacteria 31426
109 nmdc:mga00v17_70963_c1 3300050491 Bacteria 2158
110 Ga0500643_000414 3300053087 Bacteria 32589
111 Ga0500651_0000161 3300053093 Bacteria 43186
112 Ga0500556_0000007 3300053104 Bacteria 331400
113 Ga0500556_0002264 3300053104 Bacteria 6362
114 Ga0500562_003555 3300053108 Bacteria 3908
115 Ga0500592_009673 3300053116 Bacteria 1534
116 Ga0500593_001355 3300053117 Bacteria 8830
117 Ga0500655_002256 3300053133 Bacteria 3539
118 Ga0500559_0002252 3300053136 Bacteria 10189
119 Ga0500568_0000021 3300053139 Bacteria 185406
120 Ga0500568_0000557 3300053139 Bacteria 27409
121 Ga0500568_0001839 3300053139 Bacteria 13076
122 Ga0500568_0009338 3300053139 Bacteria 4667
123 Ga0500573_0000007 3300053140 Bacteria 272970
124 Ga0500573_0006498 3300053140 Bacteria 6335
125 Ga0500573_0010255 3300053140 Bacteria 5225
126 Ga0500573_0035277 3300053140 Bacteria 2885
127 Ga0500588_0012552 3300053146 Bacteria 2104
128 Ga0500616_0001242 3300053153 Bacteria 25566
129 Ga0500620_000119 3300053155 Bacteria 15657
130 2723642815 2721755702 Bacteria 4373124
131 2753302289 2751185788 Bacteria 4541048
132 2808902812 2808606372 Bacteria 4649509
133 2852645053 2852643534 Bacteria 3013378
134 2852679063 2852677369 Bacteria 3768884
135 2857736830 2857733635 Bacteria 3532004
136 2857739483 2857737099 Bacteria 3104305
137 2862995477 2862993130 Bacteria 3860849
138 2870623031 2870622029 Bacteria 3643329
139 2897563111 2897561785 Bacteria 3256946
140 2904432788 2904430863 Bacteria 3486923
141 2904503233 2904501621 Bacteria 3401437
142 2908675590 2908674828 Bacteria 3382763
143 2909074637 2909074476 Bacteria 3436050
144 2919040901 2919039151 Bacteria 3391018
145 2919043973 2919042368 Bacteria 3905917
146 2928105242 2928104781 Bacteria 3877447
147 2928500574 2928500415 Bacteria 3384541
148 2935413013 2935409751 Bacteria 4179611
149 2939657437 2939657138 Bacteria 3740283
150 2946026317 2946024296 Bacteria 3508095
151 2964329143 2964326757 Bacteria 3290868
152 2966925147 2966924647 Bacteria 3268643
153 2984554430 2984551494 Bacteria 3877562
154 2995727351 2995726249 Bacteria 3470435
155 8055036693 8055034563 Bacteria 3562128
156 8055040912 8055037949 Bacteria 3337834
157 Ga0500568_0000176
158 JGI25164J39214_1000432
159 JGI25165J46597_1000142
160 rootL2_10154252
161 Ga0070658_10000162
162 Ga0070658_10029260
163 Ga0070671_100064420
164 Ga0070659_100057523
165 Ga0070667_100010416
166 Ga0070708_100186637
167 Ga0070678_100150088
168 Ga0068853_100115889
169 Ga0068855_100091474
170 Ga0068857_100000330
171 Ga0068852_100015629
172 Ga0068852_100022441
173 Ga0068851_10000005
174 Ga0068858_100000058
175 Ga0075365_10015452
176 Ga0105240_10088450
177 Ga0105240_10166750
178 Ga0105245_10025597
179 Ga0105241_10000322
180 Ga0105248_10245995
181 Ga0105237_10000464
182 Ga0105237_10111204
183 Ga0105238_10027191
184 Ga0105239_10328471
185 Ga0157371_10008359
186 Ga0157370_10011205
187 Ga0207427_100099
188 Ga0209437_100535
189 Ga0209148_1000401
190 Ga0209233_1000001
191 Ga0207656_10000001
192 Ga0207656_10000003
193 Ga0207656_10000004
194 Ga0207705_10000001
195 Ga0207654_10000003
196 Ga0207695_10007488
197 Ga0207671_10000001
198 Ga0207671_10069053
199 Ga0207694_10000066
200 Ga0207687_10041896
201 Ga0207690_10003781
202 Ga0207690_10059929
203 Ga0207691_10030161
204 Ga0207711_10003893
205 Ga0207667_10003862
206 Ga0207703_10000026
207 Ga0207678_10065732
208 Ga0207702_10148695
209 Ga0207674_10005041
210 Ga0207675_100113218
211 Ga0207683_10220129
212 Ga0207698_10002420
213 Ga0466972_0042043
214 Ga0466965_0000012
215 Ga0466963_0000256
216 Ga0466970_0001808
217 Ga0466970_0022195
218 Ga0466960_0014268
219 Ga0466967_0242758
220 Ga0495590_0000103
221 Ga0495650_0001048
222 Ga0495672_0006160
223 Ga0496117_0009275
224 Ga0496117_0009373
225 Ga0496118_0000089
226 Ga0496119_0001228
227 Ga0496119_0008440
228 Ga0496119_0023672
229 Ga0496120_0012524
230 Ga0496121_0000040
231 Ga0496122_0003729
232 Ga0496123_0003907
233 Ga0496123_0034898
234 Ga0496123_0096616
235 Ga0496124_0000037
236 Ga0496124_0001961
237 Ga0501031_0129535
238 Ga0501032_0084633
239 Ga0501033_0007346
240 Ga0501033_0137258
241 Ga0501034_0004948
242 Ga0501034_0006906
243 Ga0501034_0012979
244 Ga0501034_0057001
245 Ga0501034_0136270
246 Ga0501034_0161595
247 Ga0501037_0064634
248 Ga0501038_0024724
249 Ga0501039_0211603
250 Ga0501043_0008683
251 Ga0501043_0036081
252 Ga0501047_0005582
253 Ga0501047_0017324
254 Ga0501070_0003131
255 Ga0501070_0011506
256 Ga0501070_0028428
257 Ga0501071_0000167
258 Ga0501072_0010589
259 Ga0501073_0000383
260 Ga0501080_0000057
261 Ga0501080_0036890
262 Ga0501083_0150058
263 Ga0501035_0001689
264 Ga0501044_0001143
265 nmdc:mga00v17_70963_c1
266 Ga0500643_000414
267 Ga0500651_0000161
268 Ga0500556_0000007
269 Ga0500556_0002264
270 Ga0500562_003555
271 Ga0500592_009673
272 Ga0500593_001355
273 Ga0500655_002256
274 Ga0500559_0002252
275 Ga0500568_0000021
276 Ga0500568_0000557
277 Ga0500568_0001839
278 Ga0500568_0009338
279 Ga0500573_0000007
280 Ga0500573_0006498
281 Ga0500573_0010255
282 Ga0500573_0035277
283 Ga0500588_0012552
284 Ga0500616_0001242
285 Ga0500620_000119
286 2723642815
287 2753302289
288 2808902812
289 2852645053
290 2852679063
291 2857736830
292 2857739483
293 2862995477
294 2870623031
295 2897563111
296 2904432788
297 2904503233
298 2908675590
299 2909074637
300 2919040901
301 2919043973
302 2928105242
303 2928500574
304 2935413013
305 2939657437
306 2946026317
307 2964329143
308 2966925147
309 2984554430
310 2995727351
311 8055036693
312 8055040912

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02784

Orn_Arg_deC_N

Pyridoxal-dependent decarboxylase, pyridoxal binding domain

95

351

0.93

PF01168

Ala_racemase_N

Alanine racemase, N-terminal domain

128

307

0.8

PF00278

Orn_DAP_Arg_deC

Pyridoxal-dependent decarboxylase, C-terminal sheet domain

87

447

0.68

Structural Annotation

Top 5 Hits

ID Description Score Start End
1hkw-assembly1.cif.gz_B mycobacterium diaminopimelate dicarboxylase (lysa) 0.9295 25 440
5x7n-assembly1.cif.gz_A crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum 0.9209 23 440
5x7n-assembly1.cif.gz_B crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum 0.9177 23 440
2p3e-assembly1.cif.gz_B crystal structure of aq1208 from aquifex aeolicus 0.8991 33 442
1tuf-assembly1.cif.gz_A crystal structure of diaminopimelate decarboxylase from m. jannaschi 0.8894 32 440
ID Description Score Start End Superfamily
2o0tA01 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9247 299 440 2.40.37.10
af_P9WIU7_308_444_2.40.37.10 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9242 301 437 2.40.37.10
2o0tA02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9142 67 295 3.20.20.10
af_Q2FYN4_284_419_2.40.37.10 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.909 297 440 2.40.37.10
af_Q2FYN4_34_283_3.20.20.10 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9059 69 293 3.20.20.10
ID Description Score Start End GO Terms
AF-A0A6B3FN51-F1-model_v4 Diaminopimelate decarboxylase 0.9879 94 173 GO:0008836
GO:0009089
AF-A0A0Q5DYL7-F1-model_v4 Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (EC 4.1.1.20) 0.9817 8 441 GO:0008836
GO:0009089
GO:0030170
AF-A0A6L6E195-F1-model_v4 Diaminopimelate decarboxylase 0.9776 12 257 GO:0008836
GO:0009089
AF-A0A1M3LFZ7-F1-model_v4 Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (EC 4.1.1.20) 0.9772 7 442 GO:0008836
GO:0009089
GO:0030170
AF-A0A0S9DKD4-F1-model_v4 Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (EC 4.1.1.20) 0.9756 9 445 GO:0008836
GO:0009089
GO:0030170

Map