F227616

General Info

Members Datasets Scaffolds Average Seq Length
157 103 314 634

Family's Representative Sequence

Representative Sequence 3300031548|Ga0307408_100000613|Ga0307408_10000061310
Length 674
Sequence MEKQFLQKYHTNTGGSLLNKLRSMPFKKTLLVGALALTVCVTNTSCKKFLDVVPDNTSEIKHAFKIRNEAEKYLYTCYSFLPKDGDGWFNVGMFAGDEMWLPQNDLAHWHNAFRIAQGQQNKSDPLFDEWTGLRKGNGNFNAHLKIFMAIRHCNIFIENMQDLTKVPDITLTERERWIGEGMFLKAFYHYYLLRMYGPVPIIDKNAAEDATGDELYYKRMPVDDVVNYVSDLLDQCLEKVPTTISQENTELGRIDRNIVLAVKAKLWLLAASPLFNGNPDYAGFKDKEGVALFNPTFDPTKWEKARDAAKAAIVAAEANGHFLYRFNDVGFKFSDTTKKQLSIRNAITARWNPEVIWGLSNSYFINEALCMPAMARGRNTDRFQLMGVWGAPVKIAKMFYTKNGVPIEEDKTLNFNNYTEVKTAGVSDRFNIEQGYQTARLNFDREHRFYADLGFDGGIWYMKDANDQKNDVDNRFYVQAKNAERSGFGHFTNWNHTGYFIKKLVNWESTTNGQNQGPSWKGYPWPEIRLADLYLMYAEALNEVEPGSATAIEYLDKIRDRAGLKGVVESWSNYSSNAGKYTTQAGLRQIIQQERLIELAFEGQRFWDLRRWKLAAEELNKDITGFNILGKTTENYNVERFIFSQTFIAPRDYLWPIGNHDTRRNPKLVENLGW

Samples

Sample ID Description Type Environment
1 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
4 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
5 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
8 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
9 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
10 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
11 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
12 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
13 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
14 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
18 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
19 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
21 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
22 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
23 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
24 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
25 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
26 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
27 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
28 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
29 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
30 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
31 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
32 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
33 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
34 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
35 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
36 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
37 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
38 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
41 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
51 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
52 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
53 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
54 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
55 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
56 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
57 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
58 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
59 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
60 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
61 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
62 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
63 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
64 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
65 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
66 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
67 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
68 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
69 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
70 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
71 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
72 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
73 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
74 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
75 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
76 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
77 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
78 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
79 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
80 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
81 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
82 2738541278 Niastella sp. CF465 Isolate Unclassified
83 2738541284 Pedobacter sp. YR016 Isolate Unclassified
84 2738541302 Pedobacter sp. CF074 Isolate Unclassified
85 2739367651 Pedobacter sp. OK291 Isolate Unclassified
86 2739367656 Pedobacter sp. CF523 Isolate Unclassified
87 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
88 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
89 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
90 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
91 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
92 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
93 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
94 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
95 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
96 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
97 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
98 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
99 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
100 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
101 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
102 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
103 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.17
Metatranscriptomes 0
Isolates 17.83

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.01
Nodule 0
Rhizoplane 1.27
Rhizosphere 65.61
Stem 0
Stem Tuber 0
Unclassified 0.64

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307408_100000613 3300031548 Bacteria 30399
2 JGI24739J22299_10004446 3300001989 Bacteria 5371
3 JGI24737J22298_10001329 3300001990 Bacteria 8757
4 JGI24735J21928_10000006 3300002067 Bacteria 339303
5 JGI25162J39368_1000094 3300002737 Bacteria 98697
6 rootH2_10198926 3300003320 Bacteria 2782
7 rootL2_10117736 3300003322 Bacteria 3234
8 rootL2_10127088 3300003322 Bacteria 4609
9 rootL2_10187826 3300003322 Bacteria 5308
10 rootH1_10068598 3300003323 Bacteria 10877
11 Ga0055536_1000003 3300003781 Bacteria 447744
12 Ga0055530_10001650 3300003791 Bacteria 15916
13 Ga0055531_10000138 3300003794 Bacteria 82997
14 Ga0065714_10002672 3300005288 Bacteria 19690
15 Ga0065714_10012154 3300005288 Bacteria 6467
16 Ga0065704_10071547 3300005289 Bacteria 10753
17 Ga0065704_10072579 3300005289 Bacteria 8308
18 Ga0065704_10073728 3300005289 Bacteria 6841
19 Ga0068853_100001245 3300005539 Bacteria 18191
20 Ga0070665_100000041 3300005548 Bacteria 297849
21 Ga0068855_100004876 3300005563 Bacteria 16375
22 Ga0068855_100060508 3300005563 Bacteria 4429
23 Ga0068860_100007456 3300005843 Bacteria 10938
24 Ga0105240_10000208 3300009093 Bacteria 118950
25 Ga0105240_10000225 3300009093 Bacteria 112806
26 Ga0105240_10005356 3300009093 Bacteria 19140
27 Ga0105240_10034745 3300009093 Bacteria 6500
28 Ga0105240_10115388 3300009093 Bacteria 3242
29 Ga0114129_10002300 3300009147 Bacteria 26489
30 Ga0114129_10014766 3300009147 Bacteria 11128
31 Ga0105243_10000002 3300009148 Bacteria 856281
32 Ga0105241_10003405 3300009174 Bacteria 11834
33 Ga0105237_10000552 3300009545 Bacteria 52409
34 Ga0105237_10011868 3300009545 Bacteria 9211
35 Ga0105237_10015806 3300009545 Bacteria 7850
36 Ga0105238_10007920 3300009551 Bacteria 10632
37 Ga0105238_10021390 3300009551 Bacteria 6589
38 Ga0105239_10000718 3300010375 Bacteria 47004
39 Ga0105239_10002897 3300010375 Bacteria 21432
40 Ga0105239_10005457 3300010375 Bacteria 14924
41 Ga0105239_10010042 3300010375 Bacteria 10614
42 Ga0157373_10002368 3300013100 Bacteria 14315
43 Ga0157371_10000009 3300013102 Bacteria 392895
44 Ga0157371_10000995 3300013102 Bacteria 31388
45 Ga0157370_10003526 3300013104 Bacteria 18338
46 Ga0157370_10146639 3300013104 Bacteria 2197
47 Ga0157370_10146736 3300013104 Bacteria 2197
48 Ga0163162_10017451 3300013306 Bacteria 7023
49 Ga0157372_10000193 3300013307 Bacteria 67258
50 Ga0157372_10223511 3300013307 Bacteria 2183
51 Ga0157375_10085401 3300013308 Bacteria 3206
52 Ga0182008_10000004 3300014497 Bacteria 436804
53 Ga0182006_1000115 3300015261 Bacteria 86290
54 Ga0182006_1000519 3300015261 Bacteria 29349
55 Ga0182005_1001966 3300015265 Bacteria 7722
56 Ga0183373_1006 3300015682 Bacteria 328276
57 Ga0163161_10000608 3300017792 Bacteria 28632
58 Ga0163161_10063230 3300017792 Bacteria 2697
59 Ga0209436_102466 3300025208 Bacteria 5538
60 Ga0209437_100077 3300025233 Bacteria 286656
61 Ga0209676_1000001 3300025292 Bacteria 1852142
62 Ga0209050_1000016 3300025298 Bacteria 729149
63 Ga0207426_1000446 3300025302 Bacteria 66148
64 Ga0207426_1006704 3300025302 Bacteria 4942
65 Ga0209257_1000001 3300025304 Bacteria 2274655
66 Ga0207695_10000257 3300025913 Bacteria 134853
67 Ga0207695_10000643 3300025913 Bacteria 69314
68 Ga0207695_10001368 3300025913 Bacteria 41364
69 Ga0207695_10043090 3300025913 Bacteria 4813
70 Ga0207671_10009245 3300025914 Bacteria 8258
71 Ga0207671_10012350 3300025914 Bacteria 6871
72 Ga0207671_10016947 3300025914 Bacteria 5639
73 Ga0207694_10006713 3300025924 Bacteria 8745
74 Ga0207709_10000003 3300025935 Bacteria 1050072
75 Ga0207667_10002912 3300025949 Bacteria 21248
76 Ga0207667_10007408 3300025949 Bacteria 13195
77 Ga0207639_10003540 3300026041 Bacteria 10493
78 Ga0268266_10000014 3300028379 Bacteria 644033
79 Ga0268264_10005202 3300028381 Bacteria 11020
80 Ga0307517_10001269 3300028786 Bacteria 42402
81 Ga0307517_10002277 3300028786 Bacteria 30968
82 Ga0307515_10002577 3300028794 Bacteria 39123
83 Ga0307515_10047079 3300028794 Bacteria 6570
84 Ga0307509_10015714 3300031507 Bacteria 8812
85 Ga0307408_100000516 3300031548 Bacteria 33359
86 Ga0307408_100012378 3300031548 Bacteria 5649
87 Ga0307508_10003071 3300031616 Bacteria 17165
88 Ga0307516_10000656 3300031730 Bacteria 46771
89 Ga0307405_10000018 3300031731 Bacteria 182495
90 Ga0307412_10001947 3300031911 Bacteria 11419
91 Ga0307507_10000015 3300033179 Bacteria 237419
92 Ga0439457_007227 3300042014 Bacteria 2674
93 Ga0439457_007724 3300042014 Bacteria 2572
94 Ga0466972_0000089 3300044658 Bacteria 82556
95 Ga0466972_0008880 3300044658 Bacteria 5042
96 Ga0466957_0003690 3300044842 Bacteria 8454
97 Ga0495650_0000014 3300046471 Bacteria 581606
98 Ga0495585_0000031 3300046492 Bacteria 143899
99 Ga0495606_0000020 3300046507 Bacteria 274490
100 Ga0495610_0000422 3300046512 Bacteria 43532
101 Ga0495610_0001415 3300046512 Bacteria 21222
102 Ga0495610_0001806 3300046512 Bacteria 18598
103 Ga0495616_0001888 3300046513 Bacteria 14154
104 Ga0495637_0020218 3300046520 Unclassified 3066
105 Ga0495633_0000302 3300046558 Bacteria 56283
106 Ga0495633_0006130 3300046558 Bacteria 7197
107 Ga0495668_0048230 3300046616 Bacteria 2363
108 Ga0495625_0000009 3300046660 Bacteria 404954
109 Ga0495661_0001418 3300046665 Bacteria 20083
110 Ga0495649_0000008 3300046694 Bacteria 483706
111 Ga0495687_000026 3300047443 Bacteria 301190
112 Ga0496101_0084410 3300048904 Bacteria 2352
113 Ga0496117_0004934 3300048920 Bacteria 14333
114 Ga0496121_0000028 3300048924 Bacteria 439193
115 Ga0496126_0089887 3300048929 Bacteria 2702
116 Ga0501225_0000306 3300049705 Bacteria 15317
117 nmdc:mga0k408_6316_c2 3300050493 Bacteria 3977
118 nmdc:mga05p37_10249_c1 3300050507 Bacteria 11128
119 nmdc:mga05p37_2901_c1 3300050507 Bacteria 19893
120 Ga0500622_0000010 3300053156 Bacteria 398804
121 Ga0500622_0000012 3300053156 Bacteria 383183
122 Ga0500622_0000044 3300053156 Bacteria 158778
123 Ga0500622_0000050 3300053156 Bacteria 145556
124 Ga0500622_0000473 3300053156 Bacteria 37893
125 Ga0500622_0000688 3300053156 Bacteria 29897
126 Ga0500622_0001337 3300053156 Bacteria 19977
127 Ga0500622_0002860 3300053156 Bacteria 12078
128 Ga0500622_0003048 3300053156 Bacteria 11578
129 Ga0500622_0004954 3300053156 Bacteria 8115
130 2599476903 2599185184 Bacteria 6430550
131 2738727284 2738541278 Bacteria 9755573
132 2738762311 2738541284 Bacteria 5199923
133 2738853119 2738541302 Bacteria 5944758
134 2739591004 2739367651 Bacteria 6359826
135 2739617672 2739367656 Bacteria 5152243
136 2819572281 2818991442 Bacteria 8318214
137 2819679727 2818991460 Bacteria 7595395
138 2821140355 2821136567 Bacteria 8080116
139 2842909972 2842909656 Bacteria 6185908
140 2852623981 2852623160 Bacteria 4376875
141 2852628937 2852627209 Bacteria 5896285
142 2884793070 2884791551 Bacteria 8511252
143 2884795200 2884791551 Bacteria 8511252
144 2884937116 2884933994 Bacteria 4535041
145 2884937254 2884933994 Bacteria 4535041
146 2896111646 2896109856 Bacteria 7140722
147 2896113896 2896109856 Bacteria 7140722
148 2896344331 2896344016 Bacteria 3811746
149 2904473938 2904467357 Bacteria 8057758
150 2919188991 2919186247 Bacteria 6244071
151 2919190138 2919186247 Bacteria 6244071
152 2928078814 2928078545 Bacteria 6534839
153 2928151508 2928147474 Bacteria 6512076
154 2932085473 2932082852 Bacteria 6563563
155 2939666854 2939664404 Bacteria 6364494
156 2939668419 2939664404 Bacteria 6364494
157 2946000310 2945997725 Bacteria 6404843
158 Ga0307408_100000613
159 JGI24739J22299_10004446
160 JGI24737J22298_10001329
161 JGI24735J21928_10000006
162 JGI25162J39368_1000094
163 rootH2_10198926
164 rootL2_10117736
165 rootL2_10127088
166 rootL2_10187826
167 rootH1_10068598
168 Ga0055536_1000003
169 Ga0055530_10001650
170 Ga0055531_10000138
171 Ga0065714_10002672
172 Ga0065714_10012154
173 Ga0065704_10071547
174 Ga0065704_10072579
175 Ga0065704_10073728
176 Ga0068853_100001245
177 Ga0070665_100000041
178 Ga0068855_100004876
179 Ga0068855_100060508
180 Ga0068860_100007456
181 Ga0105240_10000208
182 Ga0105240_10000225
183 Ga0105240_10005356
184 Ga0105240_10034745
185 Ga0105240_10115388
186 Ga0114129_10002300
187 Ga0114129_10014766
188 Ga0105243_10000002
189 Ga0105241_10003405
190 Ga0105237_10000552
191 Ga0105237_10011868
192 Ga0105237_10015806
193 Ga0105238_10007920
194 Ga0105238_10021390
195 Ga0105239_10000718
196 Ga0105239_10002897
197 Ga0105239_10005457
198 Ga0105239_10010042
199 Ga0157373_10002368
200 Ga0157371_10000009
201 Ga0157371_10000995
202 Ga0157370_10003526
203 Ga0157370_10146639
204 Ga0157370_10146736
205 Ga0163162_10017451
206 Ga0157372_10000193
207 Ga0157372_10223511
208 Ga0157375_10085401
209 Ga0182008_10000004
210 Ga0182006_1000115
211 Ga0182006_1000519
212 Ga0182005_1001966
213 Ga0183373_1006
214 Ga0163161_10000608
215 Ga0163161_10063230
216 Ga0209436_102466
217 Ga0209437_100077
218 Ga0209676_1000001
219 Ga0209050_1000016
220 Ga0207426_1000446
221 Ga0207426_1006704
222 Ga0209257_1000001
223 Ga0207695_10000257
224 Ga0207695_10000643
225 Ga0207695_10001368
226 Ga0207695_10043090
227 Ga0207671_10009245
228 Ga0207671_10012350
229 Ga0207671_10016947
230 Ga0207694_10006713
231 Ga0207709_10000003
232 Ga0207667_10002912
233 Ga0207667_10007408
234 Ga0207639_10003540
235 Ga0268266_10000014
236 Ga0268264_10005202
237 Ga0307517_10001269
238 Ga0307517_10002277
239 Ga0307515_10002577
240 Ga0307515_10047079
241 Ga0307509_10015714
242 Ga0307408_100000516
243 Ga0307408_100012378
244 Ga0307508_10003071
245 Ga0307516_10000656
246 Ga0307405_10000018
247 Ga0307412_10001947
248 Ga0307507_10000015
249 Ga0439457_007227
250 Ga0439457_007724
251 Ga0466972_0000089
252 Ga0466972_0008880
253 Ga0466957_0003690
254 Ga0495650_0000014
255 Ga0495585_0000031
256 Ga0495606_0000020
257 Ga0495610_0000422
258 Ga0495610_0001415
259 Ga0495610_0001806
260 Ga0495616_0001888
261 Ga0495637_0020218
262 Ga0495633_0000302
263 Ga0495633_0006130
264 Ga0495668_0048230
265 Ga0495625_0000009
266 Ga0495661_0001418
267 Ga0495649_0000008
268 Ga0495687_000026
269 Ga0496101_0084410
270 Ga0496117_0004934
271 Ga0496121_0000028
272 Ga0496126_0089887
273 Ga0501225_0000306
274 nmdc:mga0k408_6316_c2
275 nmdc:mga05p37_10249_c1
276 nmdc:mga05p37_2901_c1
277 Ga0500622_0000010
278 Ga0500622_0000012
279 Ga0500622_0000044
280 Ga0500622_0000050
281 Ga0500622_0000473
282 Ga0500622_0000688
283 Ga0500622_0001337
284 Ga0500622_0002860
285 Ga0500622_0003048
286 Ga0500622_0004954
287 2599476903
288 2738727284
289 2738762311
290 2738853119
291 2739591004
292 2739617672
293 2819572281
294 2819679727
295 2821140355
296 2842909972
297 2852623981
298 2852628937
299 2884793070
300 2884795200
301 2884937116
302 2884937254
303 2896111646
304 2896113896
305 2896344331
306 2904473938
307 2919188991
308 2919190138
309 2928078814
310 2928151508
311 2932085473
312 2939666854
313 2939668419
314 2946000310

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07980

SusD_RagB

SusD family

353

674

0.9

PF14322

SusD-like_3

Starch-binding associating with outer membrane

48

268

0.65

Structural Annotation

Top 5 Hits

ID Description Score Start End
7bll-assembly1.cif.gz_A structure of susd homologue bt3013 from bacteroides thetaiotaomicron 0.8497 37 629
5ck0-assembly1.cif.gz_A bt4246 0.8315 40 629
7bll-assembly1.cif.gz_A structure of susd homologue bt3013 from bacteroides thetaiotaomicron 0.8284 37 629
5ck0-assembly1.cif.gz_A bt4246 0.813 40 629
5ck1-assembly1.cif.gz_A selenomethionine bt4246 0.8115 44 629
ID Description Score Start End Superfamily
af_Q4CZA4_312_482_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.7983 114 232 1.25.40.10
3qnkC00 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.7978 21 629 1.25.40.390
3qnkC00 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.7963 21 629 1.25.40.390
af_A4HUJ4_263_389_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.7942 114 232 1.25.40.10
3ihvB01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.7753 38 206 1.25.40.890
ID Description Score Start End GO Terms
AF-A0A519VAB7-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9927 293 629 GO:0009279
AF-A0A4Q6ACH2-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9898 329 629 GO:0009279
AF-A0A519MDE2-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9896 207 629 GO:0009279
AF-A0A4Q6ACH2-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9865 329 629 GO:0009279
AF-A0A4V1SSI3-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9845 41 629 GO:0009279

Map