F228091

General Info

Members Datasets Scaffolds Average Seq Length
157 106 314 686

Family's Representative Sequence

Representative Sequence 3300046542|Ga0495597_0014244|Ga0495597_0014244_421_2688
Length 755
Sequence MCIEPVGEGAIRVTTGRSGCEGADIDNTDFDEVAPVGGDWAAPLSTGIRPPPSPAALRAWIVRQIARQGARWKLWTPVAFGLGAGTYFVLLREPRVWVAWAMLAAAGLLLAGARRRWPPLAACLVLIACGLGGFAAAKLRVERVKAPVAADAATPQRLEGWVVDVASPGQGGQRLLIAPYRLGELAPEATPIRVRVTLRDGAPIPAPGDAVSLMAVINAPPPPASPGAYDFARDAYFDSVGGVGFALGPSRSWTEPAEPPWRLRLAMKVNRLRWMMTQRIVGVLGPESGGLAAAMTTGQAAYIPQSQVDNLRASGLAHIISISGVHMAIVGGFTFAGLRLLIAAWPWLALRINGKKTAAVVGLAAVLAYLVLSGAPPPAVRAAATASIAFCAVLADRQAISLHSLAVAAFVVLLLQPEAVTQPGFQMSFAATAALVALAGVWPRPVKEINTPWPIRLAQGAGSWLLAGAAISLVAGLATAPFAIQHFNRVSTWGLVSNLLVEPISSLLMMPALAVAALLTPFGLEAGPLRLAGFAIDLTNRIAEAAANAPYAQLIVASAPGWTLPATFLGLLWVCLWRGPLRWLGLPLALAVSLTPRPAAPDAWVSADGAAVAVRRGGEALLLRPDVKLFGAELWSRRRGLAPVESAPARDAAYDCDHQSCAPRPTAPVRLAAAWNLKRPLPPGRLETLCSSAEVAVLRNGFRPGDCAAPLVLTAADFRRGGSAELYRAPDGRWRAVWAEDSRGRRPWTWGLDLR

Samples

Sample ID Description Type Environment
1 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
2 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
3 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
4 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
19 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
20 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
23 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
24 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
25 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
26 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
30 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
31 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
32 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
33 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
34 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
36 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
60 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
61 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
62 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
63 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
64 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
65 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
66 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
67 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
68 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
69 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
74 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
75 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
76 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
77 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
78 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
79 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
80 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
81 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
82 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
83 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
84 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
86 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
87 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
88 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
89 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
90 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
91 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
92 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
93 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
94 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
95 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
96 2643221574 Brevundimonas sp. Root608 Isolate Unclassified
97 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
98 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
99 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
100 2643221699 Brevundimonas sp. Root1423 Isolate Unclassified
101 2791355048 Caulobacter flavus CGMCC1 15093 Isolate Rhizosphere
102 2843744320 Caulobacter flavus RHGG3 Isolate Unclassified
103 2849560528 Caulobacter zeae 410 Isolate Unclassified
104 2849573788 Caulobacter endophyticus 774 Isolate Unclassified
105 2851153111 Caulobacter radicis 736 Isolate Unclassified
106 2898329390 Caulobacter sp. 602-2 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.99
Metatranscriptomes 0
Isolates 7.01

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.01
Nodule 0
Rhizoplane 0.64
Rhizosphere 74.52
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495597_0014244 3300046542 Bacteria 3789
2 Ga0055530_10000685 3300003791 Bacteria 28722
3 Ga0055531_10001281 3300003794 Bacteria 18942
4 Ga0055531_10007879 3300003794 Bacteria 5725
5 Ga0065165_1000552 3300005262 Bacteria 56291
6 Ga0070670_100000037 3300005331 Bacteria 156070
7 Ga0070680_100021052 3300005336 Bacteria 5179
8 Ga0070691_10002267 3300005341 Bacteria 8518
9 Ga0070668_100000489 3300005347 Bacteria 26287
10 Ga0070668_100000745 3300005347 Bacteria 22317
11 Ga0070668_100001716 3300005347 Bacteria 15917
12 Ga0070668_100017707 3300005347 Bacteria 5343
13 Ga0070668_100019694 3300005347 Bacteria 5082
14 Ga0070671_100011574 3300005355 Bacteria 7096
15 Ga0070671_100021722 3300005355 Bacteria 5242
16 Ga0070659_100001077 3300005366 Bacteria 19933
17 Ga0070667_100000083 3300005367 Bacteria 118261
18 Ga0070681_10019397 3300005458 Bacteria 6805
19 Ga0070679_100008769 3300005530 Bacteria 9540
20 Ga0068853_100017551 3300005539 Bacteria 5906
21 Ga0070665_100000483 3300005548 Bacteria 57237
22 Ga0070665_100001929 3300005548 Bacteria 23364
23 Ga0070665_100040190 3300005548 Bacteria 4701
24 Ga0068855_100019626 3300005563 Bacteria 8120
25 Ga0068855_100073594 3300005563 Bacteria 3969
26 Ga0068855_100143897 3300005563 Bacteria 2715
27 Ga0068859_100000391 3300005617 Bacteria 43751
28 Ga0068859_100012516 3300005617 Bacteria 8534
29 Ga0068864_100000115 3300005618 Bacteria 79542
30 Ga0068864_100000116 3300005618 Bacteria 79213
31 Ga0068861_100027223 3300005719 Bacteria 4163
32 Ga0068863_100000007 3300005841 Bacteria 257578
33 Ga0068863_100001697 3300005841 Bacteria 21819
34 Ga0068863_100003293 3300005841 Bacteria 15944
35 Ga0068863_100100006 3300005841 Bacteria 2756
36 Ga0068858_100000031 3300005842 Bacteria 143397
37 Ga0068858_100002371 3300005842 Bacteria 19055
38 Ga0068858_100014847 3300005842 Bacteria 7326
39 Ga0068860_100000145 3300005843 Bacteria 115830
40 Ga0068862_100000235 3300005844 Bacteria 61301
41 Ga0075366_10036762 3300006195 Bacteria 2887
42 Ga0068865_100000711 3300006881 Bacteria 18707
43 Ga0097620_100000391 3300006931 Bacteria 43751
44 Ga0097620_100012516 3300006931 Bacteria 8534
45 Ga0105240_10018864 3300009093 Bacteria 9236
46 Ga0105240_10065770 3300009093 Bacteria 4500
47 Ga0105240_10080815 3300009093 Bacteria 3996
48 Ga0105240_10082379 3300009093 Bacteria 3952
49 Ga0105248_10005672 3300009177 Bacteria 13717
50 Ga0105248_10006819 3300009177 Bacteria 12518
51 Ga0105248_10068722 3300009177 Bacteria 3978
52 Ga0157370_10106993 3300013104 Bacteria 2617
53 Ga0163163_10021167 3300014325 Bacteria 6133
54 Ga0157379_10003351 3300014968 Bacteria 13575
55 Ga0157379_10003384 3300014968 Bacteria 13491
56 Ga0157379_10040083 3300014968 Bacteria 4179
57 Ga0213872_10007981 3300021361 Bacteria 5154
58 Ga0209026_1002670 3300025250 Bacteria 6457
59 Ga0209676_1000061 3300025292 Bacteria 332674
60 Ga0209758_1001665 3300025297 Bacteria 25124
61 Ga0209050_1000101 3300025298 Bacteria 230076
62 Ga0209257_1000178 3300025304 Bacteria 160969
63 Ga0209257_1000221 3300025304 Bacteria 134870
64 Ga0209257_1002453 3300025304 Bacteria 18398
65 Ga0207705_10001576 3300025909 Bacteria 18123
66 Ga0207695_10001229 3300025913 Bacteria 43850
67 Ga0207695_10014530 3300025913 Bacteria 9319
68 Ga0207660_10003244 3300025917 Bacteria 10652
69 Ga0207657_10006923 3300025919 Bacteria 11688
70 Ga0207657_10049396 3300025919 Bacteria 3666
71 Ga0207652_10007375 3300025921 Bacteria 8865
72 Ga0207681_10016825 3300025923 Bacteria 4584
73 Ga0207650_10000062 3300025925 Bacteria 149776
74 Ga0207644_10003663 3300025931 Bacteria 9960
75 Ga0207690_10000129 3300025932 Bacteria 62350
76 Ga0207690_10011085 3300025932 Bacteria 5376
77 Ga0207711_10003138 3300025941 Bacteria 14409
78 Ga0207667_10046496 3300025949 Bacteria 4596
79 Ga0207712_10001626 3300025961 Bacteria 15143
80 Ga0207668_10000028 3300025972 Bacteria 125361
81 Ga0207668_10000130 3300025972 Bacteria 53528
82 Ga0207668_10000879 3300025972 Bacteria 18115
83 Ga0207668_10046400 3300025972 Bacteria 2968
84 Ga0207658_10000209 3300025986 Bacteria 61041
85 Ga0207703_10000038 3300026035 Bacteria 175917
86 Ga0207703_10000843 3300026035 Bacteria 30142
87 Ga0207703_10010348 3300026035 Bacteria 7300
88 Ga0207639_10048410 3300026041 Bacteria 3218
89 Ga0207641_10000012 3300026088 Bacteria 375486
90 Ga0207641_10000341 3300026088 Bacteria 56155
91 Ga0207641_10084977 3300026088 Bacteria 2756
92 Ga0207676_10000255 3300026095 Bacteria 46136
93 Ga0207676_10000716 3300026095 Bacteria 26001
94 Ga0207676_10106559 3300026095 Bacteria 2336
95 Ga0268266_10000064 3300028379 Bacteria 249533
96 Ga0268266_10000792 3300028379 Bacteria 42146
97 Ga0268266_10011715 3300028379 Bacteria 7608
98 Ga0268265_10002126 3300028380 Bacteria 15366
99 Ga0268265_10034118 3300028380 Bacteria 3707
100 Ga0268264_10000046 3300028381 Bacteria 364597
101 Ga0268264_10000059 3300028381 Bacteria 306927
102 Ga0307517_10000497 3300028786 Bacteria 67390
103 Ga0307517_10018475 3300028786 Bacteria 9014
104 Ga0265338_10027878 3300028800 Bacteria 5651
105 Ga0265327_10004486 3300031251 Bacteria 12337
106 Ga0307513_10000448 3300031456 Bacteria 59427
107 Ga0307513_10002007 3300031456 Bacteria 28699
108 Ga0307516_10000004 3300031730 Bacteria 367451
109 Ga0307406_10001178 3300031901 Bacteria 14628
110 Ga0307414_10019854 3300032004 Bacteria 4174
111 Ga0373936_0003201 3300035113 Bacteria 6137
112 Ga0373927_0001895 3300035695 Bacteria 15450
113 Ga0373925_0000061 3300037068 Bacteria 117783
114 Ga0395899_0000013 3300037312 Bacteria 510397
115 Ga0395899_0000167 3300037312 Bacteria 100973
116 Ga0395900_0000009 3300037418 Bacteria 476249
117 Ga0395900_0025531 3300037418 Bacteria 6049
118 Ga0395898_0003722 3300037466 Bacteria 16914
119 Ga0395905_0002729 3300037471 Bacteria 19333
120 Ga0395905_0020224 3300037471 Bacteria 6306
121 Ga0395901_0000014 3300038443 Bacteria 375100
122 Ga0395901_0096047 3300038443 Bacteria 3106
123 Ga0436361_0946739 3300039447 Bacteria 11603
124 Ga0495628_0077380 3300046516 Bacteria 2588
125 Ga0495668_0019630 3300046616 Bacteria 3894
126 Ga0495669_0000024 3300046684 Bacteria 113943
127 Ga0495669_0000199 3300046684 Bacteria 36829
128 Ga0495649_0000807 3300046694 Bacteria 25271
129 Ga0495581_0037070 3300047315 Bacteria 2821
130 Ga0495686_0004259 3300047472 Bacteria 11861
131 Ga0496115_0002134 3300048918 Bacteria 14137
132 Ga0496121_0000009 3300048924 Bacteria 836971
133 Ga0496125_0034177 3300048928 Bacteria 4485
134 Ga0501047_0022944 3300049581 Bacteria 5991
135 Ga0501044_0020636 3300049823 Bacteria 7035
136 nmdc:mga07m45_6925_c1 3300050496 Bacteria 5766
137 Ga0500635_0000228 3300053080 Bacteria 24908
138 Ga0500644_0001529 3300053088 Bacteria 6076
139 Ga0500651_0016093 3300053093 Bacteria 4598
140 Ga0500651_0017351 3300053093 Bacteria 4439
141 Ga0500566_0006178 3300053094 Bacteria 7120
142 Ga0500562_001465 3300053108 Bacteria 5825
143 Ga0500614_003306 3300053123 Bacteria 3486
144 Ga0500658_0022329 3300053134 Bacteria 2405
145 Ga0500616_0015165 3300053153 Bacteria 4412
146 Ga0500645_002086 3300053730 Bacteria 9244
147 2643883280 2643221574 Bacteria 2789653
148 2644084990 2643221614 Bacteria 4260023
149 2644342542 2643221661 Bacteria 4267604
150 2644365842 2643221666 Bacteria 4265935
151 2644547902 2643221699 Bacteria 5731501
152 2792463297 2791355048 Bacteria 5832535
153 2843748114 2843744320 Bacteria 5659202
154 2849564848 2849560528 Bacteria 5393480
155 2849578143 2849573788 Bacteria 5421256
156 2851154566 2851153111 Bacteria 5542585
157 2898329789 2898329390 Bacteria 5168154
158 Ga0495597_0014244
159 Ga0055530_10000685
160 Ga0055531_10001281
161 Ga0055531_10007879
162 Ga0065165_1000552
163 Ga0070670_100000037
164 Ga0070680_100021052
165 Ga0070691_10002267
166 Ga0070668_100000489
167 Ga0070668_100000745
168 Ga0070668_100001716
169 Ga0070668_100017707
170 Ga0070668_100019694
171 Ga0070671_100011574
172 Ga0070671_100021722
173 Ga0070659_100001077
174 Ga0070667_100000083
175 Ga0070681_10019397
176 Ga0070679_100008769
177 Ga0068853_100017551
178 Ga0070665_100000483
179 Ga0070665_100001929
180 Ga0070665_100040190
181 Ga0068855_100019626
182 Ga0068855_100073594
183 Ga0068855_100143897
184 Ga0068859_100000391
185 Ga0068859_100012516
186 Ga0068864_100000115
187 Ga0068864_100000116
188 Ga0068861_100027223
189 Ga0068863_100000007
190 Ga0068863_100001697
191 Ga0068863_100003293
192 Ga0068863_100100006
193 Ga0068858_100000031
194 Ga0068858_100002371
195 Ga0068858_100014847
196 Ga0068860_100000145
197 Ga0068862_100000235
198 Ga0075366_10036762
199 Ga0068865_100000711
200 Ga0097620_100000391
201 Ga0097620_100012516
202 Ga0105240_10018864
203 Ga0105240_10065770
204 Ga0105240_10080815
205 Ga0105240_10082379
206 Ga0105248_10005672
207 Ga0105248_10006819
208 Ga0105248_10068722
209 Ga0157370_10106993
210 Ga0163163_10021167
211 Ga0157379_10003351
212 Ga0157379_10003384
213 Ga0157379_10040083
214 Ga0213872_10007981
215 Ga0209026_1002670
216 Ga0209676_1000061
217 Ga0209758_1001665
218 Ga0209050_1000101
219 Ga0209257_1000178
220 Ga0209257_1000221
221 Ga0209257_1002453
222 Ga0207705_10001576
223 Ga0207695_10001229
224 Ga0207695_10014530
225 Ga0207660_10003244
226 Ga0207657_10006923
227 Ga0207657_10049396
228 Ga0207652_10007375
229 Ga0207681_10016825
230 Ga0207650_10000062
231 Ga0207644_10003663
232 Ga0207690_10000129
233 Ga0207690_10011085
234 Ga0207711_10003138
235 Ga0207667_10046496
236 Ga0207712_10001626
237 Ga0207668_10000028
238 Ga0207668_10000130
239 Ga0207668_10000879
240 Ga0207668_10046400
241 Ga0207658_10000209
242 Ga0207703_10000038
243 Ga0207703_10000843
244 Ga0207703_10010348
245 Ga0207639_10048410
246 Ga0207641_10000012
247 Ga0207641_10000341
248 Ga0207641_10084977
249 Ga0207676_10000255
250 Ga0207676_10000716
251 Ga0207676_10106559
252 Ga0268266_10000064
253 Ga0268266_10000792
254 Ga0268266_10011715
255 Ga0268265_10002126
256 Ga0268265_10034118
257 Ga0268264_10000046
258 Ga0268264_10000059
259 Ga0307517_10000497
260 Ga0307517_10018475
261 Ga0265338_10027878
262 Ga0265327_10004486
263 Ga0307513_10000448
264 Ga0307513_10002007
265 Ga0307516_10000004
266 Ga0307406_10001178
267 Ga0307414_10019854
268 Ga0373936_0003201
269 Ga0373927_0001895
270 Ga0373925_0000061
271 Ga0395899_0000013
272 Ga0395899_0000167
273 Ga0395900_0000009
274 Ga0395900_0025531
275 Ga0395898_0003722
276 Ga0395905_0002729
277 Ga0395905_0020224
278 Ga0395901_0000014
279 Ga0395901_0096047
280 Ga0436361_0946739
281 Ga0495628_0077380
282 Ga0495668_0019630
283 Ga0495669_0000024
284 Ga0495669_0000199
285 Ga0495649_0000807
286 Ga0495581_0037070
287 Ga0495686_0004259
288 Ga0496115_0002134
289 Ga0496121_0000009
290 Ga0496125_0034177
291 Ga0501047_0022944
292 Ga0501044_0020636
293 nmdc:mga07m45_6925_c1
294 Ga0500635_0000228
295 Ga0500644_0001529
296 Ga0500651_0016093
297 Ga0500651_0017351
298 Ga0500566_0006178
299 Ga0500562_001465
300 Ga0500614_003306
301 Ga0500658_0022329
302 Ga0500616_0015165
303 Ga0500645_002086
304 2643883280
305 2644084990
306 2644342542
307 2644365842
308 2644547902
309 2792463297
310 2843748114
311 2849564848
312 2849578143
313 2851154566
314 2898329789

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03772

Competence

Competence protein

295

581

0.98

PF13567

DUF4131

Domain of unknown function (DUF4131)

68

251

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
2vb3-assembly1.cif.gz_X crystal structure of ag(i)cusf 0.699 98 191
2vb3-assembly1.cif.gz_X crystal structure of ag(i)cusf 0.6832 98 191
2z6k-assembly1.cif.gz_A crystal structure of full-length human rpa14/32 heterodimer 0.5802 99 214
3e6z-assembly1.cif.gz_X 1.0 a structure of cusf-w44a-cu(ii) residues 10-88 from escherichia coli 0.5736 96 192
2qcp-assembly1.cif.gz_X 1.0 a structure of cusf-ag(i) residues 10-88 from escherichia coli 0.5657 97 192
ID Description Score Start End Superfamily
2vb2X01 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Copper binding periplasmic protein CusF 0.6921 98 192 2.40.50.320
2vb2X01 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Copper binding periplasmic protein CusF 0.6843 98 192 2.40.50.320
af_A0A1D6Q1B9_1_113_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.6428 98 199 2.40.50.140
af_P9WK97_233_330_2.40.30.10 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.6184 101 124 2.40.30.10
af_A0A1D6K475_1_143_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.6134 98 199 2.40.50.140
ID Description Score Start End GO Terms
AF-A0A1F8ICQ9-F1-model_v4 deleted 0.8742 41 520
AF-A0A3C0W597-F1-model_v4 Competence protein ComEC 0.8686 317 670 GO:0005886
AF-A0A3C0W597-F1-model_v4 Competence protein ComEC 0.8663 317 670 GO:0005886
AF-A0A2D7ZKC4-F1-model_v4 Competence protein ComEC 0.8641 391 668 GO:0005886
AF-A0A0Q5VE11-F1-model_v4 Competence protein ComEC 0.8639 33 666 GO:0005886

Map