F229339

General Info

Members Datasets Scaffolds Average Seq Length
158 121 142 333

Family's Representative Sequence

Representative Sequence 3300005985|Ga0081539_10000837|Ga0081539_1000083737
Length 341
Sequence MSAAGLRAGLIGLGAMGRNHARVLGLLDGVELVGAFDPAPGITSPYGVPVVTDVEQLLALGIHYAVVASPTALHEEIGLRLAEAGVHALIEKPIAPTVEAARRLVYAFESRGLVGAVGHIERYNPALQSLRTRLEAGELGDVYQVVTRRQGPFPGRIADVGVVMDLATHDIDLTAWVTGRGYTYVAARTVSRSGRPHEDMVSAIAELDGGVMANHLVNWLSPFKERSTVITGERGSYVADTLTADLTFYANGAVNTEWEALRAFRGVAEGDMIRYAIPKREPLLVEHERFRDAVEGKECDIVTLRQGMRTVEVAAAVLRSASDGSTVRVPPPASLGSRRRT

Samples

Sample ID Description Type Environment
1 2501939600 Micromonospora sp. L5 Isolate Unclassified
2 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
3 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
4 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
5 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
6 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
7 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
8 2811994882 Terrabacter sp. SLBN-196 Isolate Unclassified
9 2818991458 Terrabacter sp. 3211 Isolate Rhizosphere
10 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
11 2858868258 Micromonospora sp. MH33 Isolate Unclassified
12 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
13 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
14 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
15 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
16 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
17 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
18 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
19 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
20 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
21 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
26 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
29 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
32 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
35 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
38 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
39 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
40 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
41 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
42 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
57 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
58 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
59 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
60 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
61 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
62 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
63 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
64 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
65 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
66 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
67 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
68 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
69 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
70 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
71 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
72 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
73 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
74 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
75 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
76 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
77 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
78 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
79 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
80 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
81 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
82 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
83 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
84 3300049130 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
85 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
101 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
102 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
103 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
104 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
105 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
106 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
107 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
108 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
109 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
110 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
113 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
114 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
115 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
116 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
117 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
118 649633069 Micromonospora sp. L5 Isolate Unclassified
119 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
120 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
121 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 87.97
Metatranscriptomes 1.9
Isolates 10.13

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.53
Nodule 0.63
Rhizoplane 2.53
Rhizosphere 82.28
Stem 0
Stem Tuber 0
Unclassified 12.03

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 LJQas_1005899 3300000549 Bacteria 1539
2 JGI24740J21852_10035274 3300001979 Bacteria 1566
3 JGI24739J22299_10009936 3300001989 Bacteria 3538
4 JGI24737J22298_10007637 3300001990 Bacteria 3643
5 rootH1_10052993 3300003316 Bacteria 1931
6 Ga0070671_100103640 3300005355 Bacteria 2387
7 Ga0070659_100035676 3300005366 Bacteria 3873
8 Ga0070667_100061268 3300005367 Bacteria 3185
9 Ga0070672_100027583 3300005543 Bacteria 4238
10 Ga0070665_100058733 3300005548 Bacteria 3856
11 Ga0068855_100270702 3300005563 Bacteria 1889
12 Ga0068855_100680687 3300005563 Bacteria 1102
13 Ga0068856_100066334 3300005614 Bacteria 3567
14 Ga0068851_10119321 3300005834 Bacteria 1416
15 Ga0068863_100023264 3300005841 Bacteria 5921
16 Ga0068863_100046753 3300005841 Bacteria 4108
17 Ga0068860_100320637 3300005843 Bacteria 1521
18 Ga0081455_10042600 3300005937 Bacteria 3980
19 Ga0081540_1004634 3300005983 Bacteria 10398
20 Ga0081539_10000733 3300005985 Bacteria 65742
21 Ga0081539_10000837 3300005985 Bacteria 59104
22 Ga0081539_10006951 3300005985 Bacteria 10522
23 Ga0105241_10000396 3300009174 Bacteria 32960
24 Ga0105248_10012812 3300009177 Bacteria 9250
25 Ga0105237_10022761 3300009545 Bacteria 6430
26 Ga0105237_10023034 3300009545 Bacteria 6387
27 Ga0105239_10186470 3300010375 Bacteria 2322
28 Ga0157371_10117456 3300013102 Bacteria 1891
29 Ga0157369_10001226 3300013105 Bacteria 31968
30 Ga0171462_1001 3300013250 Bacteria 1135406
31 Ga0163163_10002161 3300014325 Bacteria 16619
32 Ga0163163_10014604 3300014325 Bacteria 7224
33 Ga0157379_10229360 3300014968 Bacteria 1683
34 Ga0206350_11117376 3300020080 Bacteria 2936
35 Ga0206353_10542779 3300020082 Bacteria 1303
36 Ga0209148_1001104 3300025254 Bacteria 16176
37 Ga0207647_10064188 3300025904 Bacteria 2232
38 Ga0207654_10000001 3300025911 Bacteria 1816198
39 Ga0207671_10034005 3300025914 Bacteria 3790
40 Ga0207671_10047714 3300025914 Bacteria 3169
41 Ga0207690_10023122 3300025932 Bacteria 3876
42 Ga0207711_10014744 3300025941 Bacteria 6495
43 Ga0207667_10009220 3300025949 Bacteria 11651
44 Ga0207667_10570243 3300025949 Bacteria 1143
45 Ga0207658_10214066 3300025986 Bacteria 1617
46 Ga0207702_10008122 3300026078 Bacteria 8881
47 Ga0207641_10007840 3300026088 Bacteria 8866
48 Ga0207641_10034528 3300026088 Bacteria 4208
49 Ga0207674_10377728 3300026116 Bacteria 1370
50 Ga0207683_10193999 3300026121 Bacteria 1845
51 Ga0207698_10237837 3300026142 Bacteria 1657
52 Ga0268266_10097019 3300028379 Bacteria 2592
53 Ga0316576_10032771 3300031727 Bacteria 3694
54 Ga0316576_10050434 3300031727 Bacteria 3027
55 Ga0316578_10183533 3300031728 Bacteria 1261
56 Ga0307516_10006978 3300031730 Bacteria 13099
57 Ga0307516_10011250 3300031730 Bacteria 9752
58 Ga0307413_10049493 3300031824 Bacteria 2519
59 Ga0307410_10019639 3300031852 Bacteria 4115
60 Ga0307410_10145753 3300031852 Bacteria 1757
61 Ga0307406_10021344 3300031901 Bacteria 3829
62 Ga0307406_10026708 3300031901 Bacteria 3470
63 Ga0307406_10045611 3300031901 Bacteria 2753
64 Ga0307407_10023544 3300031903 Bacteria 3215
65 Ga0307407_10130634 3300031903 Bacteria 1606
66 Ga0307412_10014557 3300031911 Bacteria 4643
67 Ga0307412_10118487 3300031911 Bacteria 1902
68 Ga0307409_100016339 3300031995 Bacteria 4907
69 Ga0307416_100127768 3300032002 Bacteria 2280
70 Ga0307416_100496368 3300032002 Bacteria 1284
71 Ga0307415_100106560 3300032126 Bacteria 2069
72 Ga0316574_0004727 3300035398 Bacteria 7186
73 Ga0316574_0084944 3300035398 Bacteria 2014
74 Ga0316584_0012896 3300036712 Bacteria 5902
75 Ga0451853_0369476 3300041512 Bacteria 1511
76 Ga0451853_0998909 3300041512 Bacteria 4669
77 Ga0466969_0057371 3300044656 Bacteria 1898
78 Ga0466958_0034382 3300045836 Bacteria 3024
79 Ga0466967_0274156 3300045976 Bacteria 1617
80 Ga0495603_0008026 3300046455 Bacteria 6375
81 Ga0495629_0000761 3300046459 Bacteria 25940
82 Ga0495629_0311244 3300046459 Bacteria 1077
83 Ga0495625_0365435 3300046660 Bacteria 909
84 Ga0495613_0008788 3300046689 Bacteria 7490
85 Ga0495604_0191487 3300047317 Bacteria 1425
86 Ga0495676_0004938 3300047321 Bacteria 12228
87 Ga0495614_0000236 3300048089 Bacteria 21472
88 Ga0496104_0062856 3300048907 Bacteria 3521
89 Ga0496104_0180605 3300048907 Bacteria 2021
90 Ga0496109_0082019 3300048912 Bacteria 2972
91 Ga0496112_0106228 3300048915 Bacteria 2777
92 Ga0496118_0015021 3300048921 Bacteria 7199
93 Ga0501310_000054 3300049130 Bacteria 10739
94 Ga0501031_0026421 3300049568 Bacteria 3784
95 Ga0501031_0158120 3300049568 Bacteria 1481
96 Ga0501032_0000349 3300049569 Bacteria 38615
97 Ga0501032_0018187 3300049569 Bacteria 4926
98 Ga0501033_0015716 3300049570 Bacteria 5739
99 Ga0501034_0002933 3300049571 Bacteria 19772
100 Ga0501034_0060835 3300049571 Bacteria 3793
101 Ga0501034_0215284 3300049571 Bacteria 1875
102 Ga0501036_0043929 3300049572 Bacteria 3784
103 Ga0501037_0030696 3300049573 Bacteria 3970
104 Ga0501038_0001555 3300049574 Bacteria 21204
105 Ga0501038_0003918 3300049574 Bacteria 13843
106 Ga0501039_0018997 3300049575 Bacteria 5274
107 Ga0501040_0004569 3300049576 Bacteria 8985
108 Ga0501041_0003724 3300049577 Bacteria 8763
109 Ga0501042_0013988 3300049578 Bacteria 5468
110 Ga0501043_0036457 3300049579 Bacteria 3868
111 Ga0501043_0082191 3300049579 Bacteria 2532
112 Ga0501046_0008494 3300049580 Bacteria 8943
113 Ga0501046_0040896 3300049580 Bacteria 3701
114 Ga0501047_0059138 3300049581 Bacteria 3701
115 Ga0501048_0060338 3300049582 Bacteria 2687
116 Ga0501067_0002254 3300049583 Bacteria 10636
117 Ga0501068_0007551 3300049584 Bacteria 6017
118 Ga0501070_0000443 3300049586 Bacteria 37718
119 Ga0501070_0016586 3300049586 Bacteria 6187
120 Ga0501070_0045273 3300049586 Bacteria 3659
121 Ga0501071_0005879 3300049587 Bacteria 7931
122 Ga0501072_0000317 3300049588 Bacteria 34327
123 Ga0501074_0007301 3300049590 Bacteria 7990
124 Ga0501076_0014122 3300049592 Bacteria 6005
125 Ga0501077_0011094 3300049593 Bacteria 5622
126 Ga0501080_0000038 3300049742 Bacteria 82193
127 Ga0501080_0014852 3300049742 Bacteria 7171
128 Ga0501083_0002463 3300049744 Bacteria 12684
129 Ga0501083_0003239 3300049744 Bacteria 11358
130 Ga0501083_0016834 3300049744 Bacteria 5107
131 Ga0501035_0005068 3300049822 Bacteria 12485
132 Ga0501035_0051126 3300049822 Bacteria 3701
133 Ga0501044_0063148 3300049823 Bacteria 3784
134 Ga0501044_0086110 3300049823 Bacteria 3174
135 Ga0501045_0009258 3300049824 Bacteria 6888
136 nmdc:mga0yw44_10892_c1 3300050492 Bacteria 4662
137 Ga0500568_0000165 3300053139 Bacteria 57124
138 Ga0500624_001839 3300053157 Bacteria 3071
139 Ga0501084_0020303 3300054114 Bacteria 5539
140 Ga0501084_0074547 3300054114 Bacteria 2842
141 Ga0501082_0002650 3300060353 Bacteria 15649
142 Ga0501082_0002655 3300060353 Bacteria 15637

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046660 Ga0495625_0365435 Ga0495625_0365435_22_879 282
2 3300047317 Ga0495604_0191487 Ga0495604_0191487_328_1317 303
3 3300005985 Ga0081539_10006951 Ga0081539_100069518 316
4 3300045976 Ga0466967_0274156 Ga0466967_0274156_18_977 316
5 3300041512 Ga0451853_0369476 Ga0451853_0369476_19_996 317
6 3300046455 Ga0495603_0008026 Ga0495603_0008026_1519_2496 317
7 3300046459 Ga0495629_0000761 Ga0495629_0000761_16469_17446 317
8 3300046689 Ga0495613_0008788 Ga0495613_0008788_4574_5551 317
9 3300047321 Ga0495676_0004938 Ga0495676_0004938_5314_6291 317
10 3300048089 Ga0495614_0000236 Ga0495614_0000236_1512_2489 317
11 3300036712 Ga0316584_0012896 Ga0316584_0012896_1864_2820 318
12 3300041512 Ga0451853_0998909 Ga0451853_0998909_2324_3301 322
13 3300009177 Ga0105248_10012812 Ga0105248_100128124 323
14 3300025941 Ga0207711_10014744 Ga0207711_100147445 323
15 3300049569 Ga0501032_0018187 Ga0501032_0018187_1533_2510 324
16 3300049571 Ga0501034_0215284 Ga0501034_0215284_249_1226 324
17 3300049586 Ga0501070_0000443 Ga0501070_0000443_16926_17903 324
18 3300049742 Ga0501080_0000038 Ga0501080_0000038_28989_29966 324
19 3300049744 Ga0501083_0016834 Ga0501083_0016834_1676_2653 324
20 3300054114 Ga0501084_0020303 Ga0501084_0020303_3008_3985 324
21 3300005355 Ga0070671_100103640 Ga0070671_1001036402 325
22 3300005366 Ga0070659_100035676 Ga0070659_1000356761 325
23 3300005543 Ga0070672_100027583 Ga0070672_1000275832 325
24 3300005563 Ga0068855_100680687 Ga0068855_1006806872 325
25 3300005841 Ga0068863_100046753 Ga0068863_1000467534 325
26 3300009174 Ga0105241_10000396 Ga0105241_1000039624 325
27 3300013102 Ga0157371_10117456 Ga0157371_101174562 325
28 3300014325 Ga0163163_10014604 Ga0163163_100146044 325
29 3300025254 Ga0209148_1001104 Ga0209148_100110413 325
30 3300025911 Ga0207654_10000001 Ga0207654_100000011213 325
31 3300025932 Ga0207690_10023122 Ga0207690_100231221 325
32 3300025949 Ga0207667_10570243 Ga0207667_105702431 325
33 3300026088 Ga0207641_10034528 Ga0207641_100345282 325
34 3300048921 Ga0496118_0015021 Ga0496118_0015021_1154_2137 325
35 3300049586 Ga0501070_0016586 Ga0501070_0016586_32_1012 325
36 iso_pu_bacteria 2643221601 2644013483 325
37 iso_pu_bacteria 2643221631 2644179336 325
38 iso_pu_bacteria 2811994882 2812375611 325
39 iso_pu_bacteria 2818991458 2819666895 325
40 3300026121 Ga0207683_10193999 Ga0207683_101939992 326
41 iso_pu_bacteria 2643221567 2643852854 326
42 iso_pu_bacteria 2643221624 2644135363 326
43 3300009545 Ga0105237_10022761 Ga0105237_100227614 327
44 3300025914 Ga0207671_10047714 Ga0207671_100477142 327
45 3300025949 Ga0207667_10009220 Ga0207667_1000922011 327
46 3300026078 Ga0207702_10008122 Ga0207702_100081224 327
47 iso_pu_bacteria 2501939600 2501945194 327
48 iso_pu_bacteria 2856858025 2856861753 327
49 iso_pu_bacteria 649633069 649812354 327
50 3300005548 Ga0070665_100058733 Ga0070665_1000587334 328
51 3300028379 Ga0268266_10097019 Ga0268266_100970192 328
52 3300053139 Ga0500568_0000165 Ga0500568_0000165_5306_6292 328
53 iso_pu_bacteria 2858868258 2858868647 328
54 iso_pu_bacteria 2996221748 2996221805 328
55 iso_pu_bacteria 8003856774 8003860042 328
56 iso_pu_bacteria 8055412473 8055418616 328
57 3300003316 rootH1_10052993 rootH1_100529932 329
58 3300005985 Ga0081539_10000733 Ga0081539_1000073315 329
59 3300005985 Ga0081539_10000837 Ga0081539_1000083737 329
60 3300031730 Ga0307516_10006978 Ga0307516_100069786 329
61 3300031730 Ga0307516_10011250 Ga0307516_100112502 329
62 3300031824 Ga0307413_10049493 Ga0307413_100494932 329
63 3300031852 Ga0307410_10019639 Ga0307410_100196392 329
64 3300031852 Ga0307410_10145753 Ga0307410_101457532 329
65 3300031901 Ga0307406_10021344 Ga0307406_100213443 329
66 3300031901 Ga0307406_10026708 Ga0307406_100267082 329
67 3300031901 Ga0307406_10045611 Ga0307406_100456112 329
68 3300031903 Ga0307407_10023544 Ga0307407_100235443 329
69 3300031903 Ga0307407_10130634 Ga0307407_101306343 329
70 3300031911 Ga0307412_10014557 Ga0307412_100145572 329
71 3300031911 Ga0307412_10118487 Ga0307412_101184872 329
72 3300031995 Ga0307409_100016339 Ga0307409_1000163392 329
73 3300032002 Ga0307416_100127768 Ga0307416_1001277681 329
74 3300032002 Ga0307416_100496368 Ga0307416_1004963681 329
75 3300032126 Ga0307415_100106560 Ga0307415_1001065601 329
76 3300049130 Ga0501310_000054 Ga0501310_000054_7029_8021 329
77 3300049568 Ga0501031_0158120 Ga0501031_0158120_147_1136 329
78 3300049571 Ga0501034_0002933 Ga0501034_0002933_9638_10627 329
79 3300049574 Ga0501038_0003918 Ga0501038_0003918_3187_4176 329
80 3300049579 Ga0501043_0082191 Ga0501043_0082191_915_1904 329
81 3300049580 Ga0501046_0008494 Ga0501046_0008494_3010_3999 329
82 3300049744 Ga0501083_0002463 Ga0501083_0002463_7179_8168 329
83 3300049822 Ga0501035_0005068 Ga0501035_0005068_9199_10188 329
84 3300049823 Ga0501044_0086110 Ga0501044_0086110_776_1765 329
85 3300053157 Ga0500624_001839 Ga0500624_001839_1373_2365 329
86 3300054114 Ga0501084_0074547 Ga0501084_0074547_57_1046 329
87 3300060353 Ga0501082_0002655 Ga0501082_0002655_10249_11238 329
88 iso_pu_bacteria 2554235005 2554258588 329
89 iso_pu_bacteria 2808606982 2811848269 329
90 iso_pu_bacteria 8025530807 8025535119 329
91 3300000549 LJQas_1005899 LJQas_10058992 330
92 3300001979 JGI24740J21852_10035274 JGI24740J21852_100352742 330
93 3300001989 JGI24739J22299_10009936 JGI24739J22299_100099362 330
94 3300001990 JGI24737J22298_10007637 JGI24737J22298_100076372 330
95 3300005367 Ga0070667_100061268 Ga0070667_1000612683 330
96 3300005563 Ga0068855_100270702 Ga0068855_1002707022 330
97 3300005614 Ga0068856_100066334 Ga0068856_1000663344 330
98 3300005834 Ga0068851_10119321 Ga0068851_101193212 330
99 3300005841 Ga0068863_100023264 Ga0068863_1000232643 330
100 3300005843 Ga0068860_100320637 Ga0068860_1003206372 330
101 3300005937 Ga0081455_10042600 Ga0081455_100426004 330
102 3300005983 Ga0081540_1004634 Ga0081540_10046344 330
103 3300009545 Ga0105237_10023034 Ga0105237_100230343 330
104 3300010375 Ga0105239_10186470 Ga0105239_101864702 330
105 3300013105 Ga0157369_10001226 Ga0157369_1000122626 330
106 3300013250 Ga0171462_1001 Ga0171462_1001336 330
107 3300014325 Ga0163163_10002161 Ga0163163_100021615 330
108 3300014968 Ga0157379_10229360 Ga0157379_102293602 330
109 3300020080 Ga0206350_11117376 Ga0206350_111173762 330
110 3300020082 Ga0206353_10542779 Ga0206353_105427792 330
111 3300025904 Ga0207647_10064188 Ga0207647_100641882 330
112 3300025914 Ga0207671_10034005 Ga0207671_100340054 330
113 3300025986 Ga0207658_10214066 Ga0207658_102140662 330
114 3300026088 Ga0207641_10007840 Ga0207641_100078407 330
115 3300026116 Ga0207674_10377728 Ga0207674_103777282 330
116 3300026142 Ga0207698_10237837 Ga0207698_102378372 330
117 3300031727 Ga0316576_10032771 Ga0316576_100327712 330
118 3300031727 Ga0316576_10050434 Ga0316576_100504342 330
119 3300031728 Ga0316578_10183533 Ga0316578_101835332 330
120 3300035398 Ga0316574_0004727 Ga0316574_0004727_1091_2092 330
121 3300035398 Ga0316574_0084944 Ga0316574_0084944_61_1053 330
122 3300044656 Ga0466969_0057371 Ga0466969_0057371_484_1506 330
123 3300045836 Ga0466958_0034382 Ga0466958_0034382_1372_2385 330
124 3300046459 Ga0495629_0311244 Ga0495629_0311244_21_1031 330
125 3300048907 Ga0496104_0062856 Ga0496104_0062856_1058_2086 330
126 3300048907 Ga0496104_0180605 Ga0496104_0180605_358_1380 330
127 3300048912 Ga0496109_0082019 Ga0496109_0082019_1619_2620 330
128 3300048915 Ga0496112_0106228 Ga0496112_0106228_1702_2724 330
129 3300049568 Ga0501031_0026421 Ga0501031_0026421_1305_2327 330
130 3300049569 Ga0501032_0000349 Ga0501032_0000349_4606_5628 330
131 3300049570 Ga0501033_0015716 Ga0501033_0015716_3413_4435 330
132 3300049571 Ga0501034_0060835 Ga0501034_0060835_1467_2489 330
133 3300049572 Ga0501036_0043929 Ga0501036_0043929_1458_2480 330
134 3300049573 Ga0501037_0030696 Ga0501037_0030696_1305_2327 330
135 3300049574 Ga0501038_0001555 Ga0501038_0001555_1305_2327 330
136 3300049575 Ga0501039_0018997 Ga0501039_0018997_2948_3970 330
137 3300049576 Ga0501040_0004569 Ga0501040_0004569_3500_4522 330
138 3300049577 Ga0501041_0003724 Ga0501041_0003724_3675_4697 330
139 3300049578 Ga0501042_0013988 Ga0501042_0013988_1375_2397 330
140 3300049579 Ga0501043_0036457 Ga0501043_0036457_1542_2564 330
141 3300049580 Ga0501046_0040896 Ga0501046_0040896_1305_2327 330
142 3300049581 Ga0501047_0059138 Ga0501047_0059138_1305_2327 330
143 3300049582 Ga0501048_0060338 Ga0501048_0060338_361_1383 330
144 3300049583 Ga0501067_0002254 Ga0501067_0002254_4582_5604 330
145 3300049584 Ga0501068_0007551 Ga0501068_0007551_4556_5578 330
146 3300049586 Ga0501070_0045273 Ga0501070_0045273_1305_2327 330
147 3300049587 Ga0501071_0005879 Ga0501071_0005879_4564_5586 330
148 3300049588 Ga0501072_0000317 Ga0501072_0000317_28851_29873 330
149 3300049590 Ga0501074_0007301 Ga0501074_0007301_1600_2622 330
150 3300049592 Ga0501076_0014122 Ga0501076_0014122_3258_4280 330
151 3300049593 Ga0501077_0011094 Ga0501077_0011094_1622_2644 330
152 3300049742 Ga0501080_0014852 Ga0501080_0014852_5838_6860 330
153 3300049744 Ga0501083_0003239 Ga0501083_0003239_3385_4407 330
154 3300049822 Ga0501035_0051126 Ga0501035_0051126_1305_2327 330
155 3300049823 Ga0501044_0063148 Ga0501044_0063148_1458_2480 330
156 3300049824 Ga0501045_0009258 Ga0501045_0009258_4562_5584 330
157 3300050492 nmdc:mga0yw44_10892_c1 nmdc:mga0yw44_10892_c1_2608_3633 330
158 3300060353 Ga0501082_0002650 Ga0501082_0002650_10522_11544 330

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22725

GFO_IDH_MocA_C3

GFO/IDH/MocA C-terminal domain

127

238

0.94

PF01408

GFO_IDH_MocA

Oxidoreductase family, NAD-binding Rossmann fold

6

119

0.93

PF02894

GFO_IDH_MocA_C

Oxidoreductase family, C-terminal alpha/beta domain

131

329

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
7bvk-assembly2.cif.gz_B udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p212121) 0.9127 1 324
7bvj-assembly3.cif.gz_C udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p21) 0.911 1 319
7bvk-assembly2.cif.gz_B udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p212121) 0.9098 1 324
7bvj-assembly1.cif.gz_A udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p21) 0.9073 1 319
7bvj-assembly4.cif.gz_D udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p21) 0.906 1 324
ID Description Score Start End Superfamily
af_A0A1D8PQS5_5_151_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9503 3 135 3.40.50.720
af_P39353_1_125_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9266 4 122 3.40.50.720
af_P75931_1_120_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9263 1 117 3.40.50.720
3moiA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9261 3 117 3.40.50.720
af_D4A903_1_122_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9165 3 114 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A497EVI9-F1-model_v4 GFO/IDH/MocA-like oxidoreductase domain-containing protein 0.9531 105 329
AF-A0A836SQT7-F1-model_v4 Gfo/Idh/MocA family oxidoreductase 0.9513 2 139 GO:0000166
AF-A0A2V8W3V3-F1-model_v4 Gfo/Idh/MocA-like oxidoreductase N-terminal domain-containing protein 0.9454 3 139 GO:0000166
AF-A0A2R6G1Q3-F1-model_v4 Gfo/Idh/MocA family oxidoreductase 0.9448 3 136 GO:0000166
AF-A0A1Q7SRN7-F1-model_v4 Oxidoreductase 0.9404 1 330 GO:0000166
GO:0016491

Feature Viewer

pLDDT pTM Quality
92.06 0.89 High
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Predicted Structure (AlphaFold2)

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