F229990

General Info

Members Datasets Scaffolds Average Seq Length
158 125 153 493

Family's Representative Sequence

Representative Sequence 3300029957|Ga0265324_10000012|Ga0265324_10000012174
Length 533
Sequence MKLSELLREAGITLTSARDPEIAAVRIDSRKVEKGDLFLALKGAHDDGSRYVADAIARGAAAVLSEGNSHPALEGAPEPHPGAEILPCPGLRSQVGDLFNAWYGRPAEVMDTVAVTGTNGKSTITKLTSSILKAAGRKVISLGTISYDIDGESLPSDLTTPGPDQFFGLLRQGADKGCTGLSMEVSSHALSQDRVKGVLFSRAIFTNLTRDHMDYHPDFEDYYQTKKRLFTHYLRPDGVAILNLDSPQGVRLARELSCAKLTFSRGAHTLEALAGQADQANQAGISSGRPPLARPQADLELKSSRLTLSGTEFEIAFKGAPFRFQSKLVGSLNLENLLAAVAFGFSMGFDSETIGTGIRDVTVLGRAQVFALPSGGFAVVDYAHTPDALERILISLRPLTPGKLACLFGCGGDRDRTKRPIMGKIAVTLADRAFLTSDNPRGESPEAILSEVAAGMPDASMATLIADRREAIRTALATLGKDDCLLIAGKGHEDYQIIGKTKRHFSDQEEILAWAAEAGKSGAGRPKESSHGT

Samples

Sample ID Description Type Environment
1 2643221580 Devosia sp. Root635 Isolate Unclassified
2 2643221591 Devosia sp. Root685 Isolate Unclassified
3 2643221660 Methylibium sp. Root1272 Isolate Unclassified
4 2643221674 Devosia sp. Root436 Isolate Unclassified
5 2932401849 Devosia sp. 2618 Isolate Rhizosphere
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
11 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
12 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
13 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
14 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
15 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
23 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
24 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
31 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
32 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
33 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
34 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
37 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
44 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
45 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
60 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
61 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
62 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
63 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
64 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
65 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
66 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
67 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
68 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
69 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
70 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
71 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
72 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
73 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
74 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
75 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
76 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
77 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
78 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
79 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
80 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
81 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
82 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
83 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
84 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
85 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
86 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
87 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
88 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
89 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
90 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
91 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
92 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
93 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
94 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
95 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
96 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
97 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
98 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
99 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
100 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
101 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
102 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
103 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
104 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
112 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
113 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
114 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
115 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
116 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
117 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
118 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
119 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
120 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
121 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
122 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
123 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
124 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
125 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.84
Metatranscriptomes 0
Isolates 3.16

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.16
Nodule 0
Rhizoplane 2.53
Rhizosphere 88.61
Stem 0
Stem Tuber 0
Unclassified 5.7

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10059440 3300003323 Bacteria 2238
2 Ga0070658_10012973 3300005327 Bacteria 6688
3 Ga0070683_100005576 3300005329 Bacteria 10508
4 Ga0070670_100038271 3300005331 Bacteria 4125
5 Ga0070666_10143414 3300005335 Bacteria 1664
6 Ga0070680_100074899 3300005336 Bacteria 2786
7 Ga0068868_100062575 3300005338 Bacteria 2950
8 Ga0070660_100009393 3300005339 Bacteria 6875
9 Ga0070668_100020315 3300005347 Bacteria 5011
10 Ga0070675_100038276 3300005354 Bacteria 3908
11 Ga0070675_100159378 3300005354 Bacteria 1939
12 Ga0070659_100032364 3300005366 Bacteria 4055
13 Ga0070681_10039039 3300005458 Bacteria 4760
14 Ga0068867_100066237 3300005459 Bacteria 2690
15 Ga0070679_100031490 3300005530 Bacteria 5240
16 Ga0070684_100057969 3300005535 Bacteria 3383
17 Ga0068853_100108019 3300005539 Bacteria 2468
18 Ga0070672_100009501 3300005543 Bacteria 6708
19 Ga0070695_100009083 3300005545 Bacteria 5908
20 Ga0070704_100189222 3300005549 Bacteria 1653
21 Ga0070664_100022181 3300005564 Bacteria 5237
22 Ga0068856_100030870 3300005614 Bacteria 5240
23 Ga0068852_100010318 3300005616 Bacteria 6975
24 Ga0068852_100012694 3300005616 Bacteria 6410
25 Ga0068859_100036578 3300005617 Bacteria 4929
26 Ga0068863_100069681 3300005841 Bacteria 3325
27 Ga0075365_10139068 3300006038 Bacteria 1685
28 Ga0075362_10025120 3300006177 Bacteria 2533
29 Ga0075370_10004705 3300006353 Bacteria 6665
30 Ga0075428_100000795 3300006844 Bacteria 32906
31 Ga0075428_100094256 3300006844 Bacteria 3264
32 Ga0075430_100000586 3300006846 Bacteria 27612
33 Ga0075430_100001373 3300006846 Bacteria 19749
34 Ga0075430_100131562 3300006846 Bacteria 2085
35 Ga0075431_100002078 3300006847 Bacteria 19121
36 Ga0075431_100031693 3300006847 Bacteria 5445
37 Ga0075429_100000268 3300006880 Bacteria 36304
38 Ga0097620_100036579 3300006931 Bacteria 4929
39 Ga0105240_10024800 3300009093 Bacteria 7897
40 Ga0111539_10023005 3300009094 Bacteria 7653
41 Ga0111539_10051586 3300009094 Bacteria 4899
42 Ga0111539_10068158 3300009094 Bacteria 4201
43 Ga0114129_10002104 3300009147 Bacteria 27400
44 Ga0114129_10039856 3300009147 Bacteria 6626
45 Ga0114129_10042840 3300009147 Bacteria 6370
46 Ga0105238_10012109 3300009551 Bacteria 8693
47 Ga0157370_10044295 3300013104 Bacteria 4278
48 Ga0157374_10136754 3300013296 Bacteria 2376
49 Ga0157379_10085782 3300014968 Bacteria 2823
50 Ga0207705_10006901 3300025909 Bacteria 8391
51 Ga0207660_10050995 3300025917 Bacteria 2940
52 Ga0207657_10012801 3300025919 Bacteria 8257
53 Ga0207650_10039557 3300025925 Bacteria 3446
54 Ga0207691_10009401 3300025940 Bacteria 9388
55 Ga0207691_10016029 3300025940 Bacteria 7119
56 Ga0207667_10018613 3300025949 Bacteria 7783
57 Ga0207651_10035099 3300025960 Bacteria 3256
58 Ga0207651_10039401 3300025960 Bacteria 3116
59 Ga0207668_10005717 3300025972 Bacteria 7327
60 Ga0207640_10027762 3300025981 Bacteria 3452
61 Ga0207702_10178523 3300026078 Bacteria 1953
62 Ga0207641_10067752 3300026088 Bacteria 3059
63 Ga0207648_10026946 3300026089 Bacteria 5104
64 Ga0207674_10010601 3300026116 Bacteria 10428
65 Ga0207698_10093598 3300026142 Bacteria 2468
66 Ga0265318_10000206 3300028577 Bacteria 50931
67 Ga0265338_10048443 3300028800 Bacteria 3865
68 Ga0265324_10000012 3300029957 Bacteria 212868
69 Ga0265330_10003483 3300031235 Bacteria 8204
70 Ga0265332_10003635 3300031238 Bacteria 7391
71 Ga0265332_10046463 3300031238 Bacteria 1869
72 Ga0265328_10000435 3300031239 Bacteria 19580
73 Ga0265325_10001456 3300031241 Bacteria 16632
74 Ga0265329_10000139 3300031242 Bacteria 34914
75 Ga0265329_10008396 3300031242 Bacteria 3919
76 Ga0265340_10018684 3300031247 Bacteria 3574
77 Ga0265340_10036601 3300031247 Bacteria 2432
78 Ga0265339_10001900 3300031249 Bacteria 15338
79 Ga0265331_10005128 3300031250 Bacteria 7981
80 Ga0265331_10055916 3300031250 Bacteria 1876
81 Ga0265316_10005524 3300031344 Bacteria 12265
82 Ga0307513_10055774 3300031456 Bacteria 4225
83 Ga0307408_100030257 3300031548 Bacteria 3758
84 Ga0265313_10000285 3300031595 Bacteria 55547
85 Ga0265313_10017090 3300031595 Bacteria 4139
86 Ga0316575_10000633 3300031665 Bacteria 10355
87 Ga0265314_10005244 3300031711 Bacteria 11743
88 Ga0265342_10002774 3300031712 Bacteria 14839
89 Ga0307405_10061864 3300031731 Bacteria 2368
90 Ga0307406_10051854 3300031901 Bacteria 2607
91 Ga0307416_100015594 3300032002 Bacteria 5254
92 Ga0307414_10010898 3300032004 Bacteria 5304
93 Ga0373950_0000089 3300034818 Bacteria 25034
94 Ga0373933_0019240 3300035724 Bacteria 3854
95 Ga0373937_0033746 3300036401 Bacteria 4651
96 Ga0316582_0100162 3300036647 Bacteria 1918
97 Ga0395899_0000721 3300037312 Bacteria 33125
98 Ga0395899_0006264 3300037312 Bacteria 9213
99 Ga0395899_0038469 3300037312 Bacteria 3583
100 Ga0395900_0000209 3300037418 Bacteria 91678
101 Ga0395900_0020993 3300037418 Bacteria 6675
102 Ga0395900_0037038 3300037418 Bacteria 5030
103 Ga0395898_0002760 3300037466 Bacteria 20226
104 Ga0395898_0028795 3300037466 Bacteria 5567
105 Ga0395905_0002063 3300037471 Bacteria 22894
106 Ga0395901_0004796 3300038443 Bacteria 13643
107 Ga0400489_15075 3300039093 Bacteria 3390
108 Ga0453684_0331154 3300044712 Bacteria 1722
109 Ga0466970_0007721 3300044765 Bacteria 5398
110 Ga0451576_0005799 3300045051 Bacteria 15353
111 Ga0495620_0011064 3300046515 Bacteria 4725
112 Ga0495674_0008997 3300047319 Bacteria 9488
113 Ga0495672_0000939 3300047320 Bacteria 30386
114 Ga0495686_0079352 3300047472 Bacteria 2007
115 Ga0496102_0007528 3300048905 Bacteria 9309
116 Ga0496107_0154892 3300048910 Bacteria 1696
117 Ga0496111_0031935 3300048914 Bacteria 3753
118 Ga0496114_0050040 3300048917 Bacteria 3478
119 Ga0496125_0000180 3300048928 Bacteria 138952
120 Ga0496126_0049846 3300048929 Bacteria 3821
121 Ga0501031_0075935 3300049568 Bacteria 2188
122 Ga0501032_0018724 3300049569 Bacteria 4846
123 Ga0501034_0000780 3300049571 Bacteria 47710
124 Ga0501034_0010235 3300049571 Bacteria 9782
125 Ga0501034_0068503 3300049571 Bacteria 3558
126 Ga0501034_0100342 3300049571 Bacteria 2889
127 Ga0501036_0032558 3300049572 Bacteria 4405
128 Ga0501037_0027684 3300049573 Bacteria 4188
129 Ga0501038_0008188 3300049574 Bacteria 9616
130 Ga0501046_0000005 3300049580 Bacteria 394121
131 Ga0501067_0000161 3300049583 Bacteria 37831
132 Ga0501067_0008875 3300049583 Bacteria 5569
133 Ga0501067_0021655 3300049583 Bacteria 3557
134 Ga0501072_0008939 3300049588 Bacteria 7615
135 Ga0501072_0024184 3300049588 Bacteria 4724
136 Ga0501073_0000682 3300049589 Bacteria 23895
137 Ga0501073_0004630 3300049589 Bacteria 10335
138 Ga0501073_0082125 3300049589 Bacteria 2241
139 Ga0501075_0005994 3300049591 Bacteria 8325
140 Ga0501076_0065291 3300049592 Bacteria 2902
141 Ga0501077_0040262 3300049593 Bacteria 2978
142 nmdc:mga05p37_3059_c2 3300050507 Bacteria 13615
143 nmdc:mga05p37_7425_c1 3300050507 Bacteria 12933
144 nmdc:mga09592_36395_c1 3300050508 Bacteria 4122
145 nmdc:mga0qj67_127_c1 3300050509 Bacteria 50287
146 nmdc:mga0qj67_1289_c1 3300050509 Bacteria 17564
147 nmdc:mga06r32_15498_c1 3300050510 Bacteria 6921
148 nmdc:mga06r32_2863_c1 3300050510 Bacteria 15485
149 nmdc:mga08y16_61776_c1 3300050511 Bacteria 3912
150 Ga0500604_0000965 3300053151 Bacteria 7986
151 Ga0500634_0000041 3300053161 Bacteria 59177
152 Ga0501084_0080118 3300054114 Bacteria 2738
153 Ga0530510_0015477 3300061734 Bacteria 5392

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025960 Ga0207651_10039401 Ga0207651_100394011 402
2 3300047472 Ga0495686_0079352 Ga0495686_0079352_25_1281 414
3 3300048910 Ga0496107_0154892 Ga0496107_0154892_303_1646 420
4 3300009094 Ga0111539_10023005 Ga0111539_100230054 439
5 3300050511 nmdc:mga08y16_61776_c1 nmdc:mga08y16_61776_c1_1452_2945 439
6 3300005354 Ga0070675_100159378 Ga0070675_1001593781 443
7 3300009094 Ga0111539_10068158 Ga0111539_100681583 443
8 3300031665 Ga0316575_10000633 Ga0316575_100006336 450
9 3300006846 Ga0075430_100131562 Ga0075430_1001315622 454
10 3300037312 Ga0395899_0006264 Ga0395899_0006264_2930_4372 457
11 3300037418 Ga0395900_0000209 Ga0395900_0000209_52043_53485 457
12 3300037466 Ga0395898_0028795 Ga0395898_0028795_1062_2504 457
13 3300037471 Ga0395905_0002063 Ga0395905_0002063_3965_5407 457
14 3300047319 Ga0495674_0008997 Ga0495674_0008997_3480_5015 457
15 3300048914 Ga0496111_0031935 Ga0496111_0031935_2355_3740 457
16 3300048928 Ga0496125_0000180 Ga0496125_0000180_83144_84529 457
17 3300037312 Ga0395899_0000721 Ga0395899_0000721_1603_3045 458
18 3300037418 Ga0395900_0037038 Ga0395900_0037038_841_2283 458
19 3300009094 Ga0111539_10051586 Ga0111539_100515862 461
20 3300006844 Ga0075428_100094256 Ga0075428_1000942562 463
21 3300005458 Ga0070681_10039039 Ga0070681_100390392 464
22 3300046515 Ga0495620_0011064 Ga0495620_0011064_945_2396 464
23 3300047320 Ga0495672_0000939 Ga0495672_0000939_16473_17924 464
24 3300005329 Ga0070683_100005576 Ga0070683_1000055764 466
25 3300005535 Ga0070684_100057969 Ga0070684_1000579692 466
26 3300044712 Ga0453684_0331154 Ga0453684_0331154_95_1564 469
27 iso_pu_bacteria 2643221580 2643910581 469
28 iso_pu_bacteria 2643221591 2643962934 469
29 iso_pu_bacteria 2643221674 2644411242 469
30 iso_pu_bacteria 2932401849 2932402715 469
31 3300005327 Ga0070658_10012973 Ga0070658_100129733 470
32 3300005335 Ga0070666_10143414 Ga0070666_101434142 470
33 3300005338 Ga0068868_100062575 Ga0068868_1000625752 470
34 3300005339 Ga0070660_100009393 Ga0070660_1000093935 470
35 3300005366 Ga0070659_100032364 Ga0070659_1000323642 470
36 3300005459 Ga0068867_100066237 Ga0068867_1000662372 470
37 3300005539 Ga0068853_100108019 Ga0068853_1001080192 470
38 3300005564 Ga0070664_100022181 Ga0070664_1000221812 470
39 3300005614 Ga0068856_100030870 Ga0068856_1000308702 470
40 3300005616 Ga0068852_100012694 Ga0068852_1000126945 470
41 3300006038 Ga0075365_10139068 Ga0075365_101390682 470
42 3300006177 Ga0075362_10025120 Ga0075362_100251202 470
43 3300006353 Ga0075370_10004705 Ga0075370_100047056 470
44 3300009093 Ga0105240_10024800 Ga0105240_100248002 470
45 3300009551 Ga0105238_10012109 Ga0105238_100121092 470
46 3300013104 Ga0157370_10044295 Ga0157370_100442954 470
47 3300013296 Ga0157374_10136754 Ga0157374_101367542 470
48 3300025909 Ga0207705_10006901 Ga0207705_100069014 470
49 3300025919 Ga0207657_10012801 Ga0207657_100128014 470
50 3300025949 Ga0207667_10018613 Ga0207667_100186131 470
51 3300025981 Ga0207640_10027762 Ga0207640_100277622 470
52 3300026078 Ga0207702_10178523 Ga0207702_101785232 470
53 3300026089 Ga0207648_10026946 Ga0207648_100269462 470
54 3300026116 Ga0207674_10010601 Ga0207674_100106013 470
55 3300028800 Ga0265338_10048443 Ga0265338_100484432 470
56 3300031241 Ga0265325_10001456 Ga0265325_100014567 470
57 3300031242 Ga0265329_10008396 Ga0265329_100083963 470
58 3300031247 Ga0265340_10036601 Ga0265340_100366012 470
59 3300031249 Ga0265339_10001900 Ga0265339_100019006 470
60 3300031250 Ga0265331_10055916 Ga0265331_100559161 470
61 3300031595 Ga0265313_10000285 Ga0265313_1000028521 470
62 3300035724 Ga0373933_0019240 Ga0373933_0019240_132_1727 470
63 3300036401 Ga0373937_0033746 Ga0373937_0033746_2128_3723 470
64 3300049569 Ga0501032_0018724 Ga0501032_0018724_786_2246 470
65 3300049571 Ga0501034_0100342 Ga0501034_0100342_1200_2687 470
66 3300049572 Ga0501036_0032558 Ga0501036_0032558_919_2379 470
67 3300049573 Ga0501037_0027684 Ga0501037_0027684_2069_3529 470
68 3300049574 Ga0501038_0008188 Ga0501038_0008188_7475_8935 470
69 3300005347 Ga0070668_100020315 Ga0070668_1000203153 471
70 3300025972 Ga0207668_10005717 Ga0207668_100057172 471
71 3300031901 Ga0307406_10051854 Ga0307406_100518542 471
72 3300032004 Ga0307414_10010898 Ga0307414_100108984 471
73 3300048929 Ga0496126_0049846 Ga0496126_0049846_1384_2826 471
74 3300049568 Ga0501031_0075935 Ga0501031_0075935_726_2168 471
75 3300049571 Ga0501034_0000780 Ga0501034_0000780_37655_39097 471
76 3300049571 Ga0501034_0068503 Ga0501034_0068503_1388_2830 471
77 3300053151 Ga0500604_0000965 Ga0500604_0000965_3529_4971 471
78 3300053161 Ga0500634_0000041 Ga0500634_0000041_43628_45073 472
79 3300049583 Ga0501067_0008875 Ga0501067_0008875_2316_3857 473
80 3300049589 Ga0501073_0004630 Ga0501073_0004630_8703_10244 473
81 3300031247 Ga0265340_10018684 Ga0265340_100186842 474
82 3300048917 Ga0496114_0050040 Ga0496114_0050040_1874_3466 475
83 3300005530 Ga0070679_100031490 Ga0070679_1000314902 479
84 iso_pu_bacteria 2643221660 2644340817 479
85 3300048905 Ga0496102_0007528 Ga0496102_0007528_3765_5234 480
86 3300034818 Ga0373950_0000089 Ga0373950_0000089_15055_16575 481
87 3300049583 Ga0501067_0000161 Ga0501067_0000161_33392_34912 481
88 3300049583 Ga0501067_0021655 Ga0501067_0021655_32_1552 481
89 3300049589 Ga0501073_0000682 Ga0501073_0000682_3548_5068 481
90 3300005336 Ga0070680_100074899 Ga0070680_1000748992 483
91 3300005545 Ga0070695_100009083 Ga0070695_1000090832 483
92 3300005549 Ga0070704_100189222 Ga0070704_1001892221 483
93 3300005617 Ga0068859_100036578 Ga0068859_1000365784 483
94 3300006931 Ga0097620_100036579 Ga0097620_1000365794 483
95 3300009147 Ga0114129_10042840 Ga0114129_100428402 483
96 3300025917 Ga0207660_10050995 Ga0207660_100509952 483
97 3300028577 Ga0265318_10000206 Ga0265318_100002069 484
98 3300031235 Ga0265330_10003483 Ga0265330_100034832 484
99 3300031238 Ga0265332_10003635 Ga0265332_100036355 484
100 3300031239 Ga0265328_10000435 Ga0265328_100004357 484
101 3300031242 Ga0265329_10000139 Ga0265329_100001392 484
102 3300031250 Ga0265331_10005128 Ga0265331_100051282 484
103 3300031344 Ga0265316_10005524 Ga0265316_100055245 484
104 3300031595 Ga0265313_10017090 Ga0265313_100170902 484
105 3300031711 Ga0265314_10005244 Ga0265314_100052445 484
106 3300031712 Ga0265342_10002774 Ga0265342_100027746 484
107 3300045051 Ga0451576_0005799 Ga0451576_0005799_12598_14106 484
108 3300049588 Ga0501072_0024184 Ga0501072_0024184_2932_4428 484
109 3300049591 Ga0501075_0005994 Ga0501075_0005994_3255_4751 484
110 3300049592 Ga0501076_0065291 Ga0501076_0065291_107_1603 484
111 3300054114 Ga0501084_0080118 Ga0501084_0080118_35_1531 484
112 3300061734 Ga0530510_0015477 Ga0530510_0015477_2279_3775 484
113 3300005543 Ga0070672_100009501 Ga0070672_1000095015 485
114 3300005841 Ga0068863_100069681 Ga0068863_1000696812 485
115 3300006844 Ga0075428_100000795 Ga0075428_1000007954 485
116 3300006846 Ga0075430_100000586 Ga0075430_1000005864 485
117 3300006846 Ga0075430_100001373 Ga0075430_1000013734 485
118 3300006847 Ga0075431_100002078 Ga0075431_10000207819 485
119 3300006847 Ga0075431_100031693 Ga0075431_1000316934 485
120 3300006880 Ga0075429_100000268 Ga0075429_10000026836 485
121 3300009147 Ga0114129_10002104 Ga0114129_1000210422 485
122 3300009147 Ga0114129_10039856 Ga0114129_100398563 485
123 3300014968 Ga0157379_10085782 Ga0157379_100857822 485
124 3300025940 Ga0207691_10016029 Ga0207691_100160295 485
125 3300026088 Ga0207641_10067752 Ga0207641_100677522 485
126 3300031456 Ga0307513_10055774 Ga0307513_100557742 485
127 3300031548 Ga0307408_100030257 Ga0307408_1000302571 485
128 3300031731 Ga0307405_10061864 Ga0307405_100618641 485
129 3300032002 Ga0307416_100015594 Ga0307416_1000155945 485
130 3300036647 Ga0316582_0100162 Ga0316582_0100162_200_1735 485
131 3300037312 Ga0395899_0038469 Ga0395899_0038469_572_2071 485
132 3300037418 Ga0395900_0020993 Ga0395900_0020993_2478_3977 485
133 3300037466 Ga0395898_0002760 Ga0395898_0002760_9282_10781 485
134 3300038443 Ga0395901_0004796 Ga0395901_0004796_9472_10971 485
135 3300049588 Ga0501072_0008939 Ga0501072_0008939_3954_5453 485
136 3300049593 Ga0501077_0040262 Ga0501077_0040262_1042_2541 485
137 3300050507 nmdc:mga05p37_3059_c2 nmdc:mga05p37_3059_c2_2653_4152 485
138 3300050507 nmdc:mga05p37_7425_c1 nmdc:mga05p37_7425_c1_9585_11084 485
139 3300050508 nmdc:mga09592_36395_c1 nmdc:mga09592_36395_c1_48_1547 485
140 3300050509 nmdc:mga0qj67_127_c1 nmdc:mga0qj67_127_c1_31487_32986 485
141 3300050509 nmdc:mga0qj67_1289_c1 nmdc:mga0qj67_1289_c1_2113_3612 485
142 3300050510 nmdc:mga06r32_15498_c1 nmdc:mga06r32_15498_c1_2494_3993 485
143 3300050510 nmdc:mga06r32_2863_c1 nmdc:mga06r32_2863_c1_8928_10427 485
144 3300031238 Ga0265332_10046463 Ga0265332_100464632 486
145 3300049589 Ga0501073_0082125 Ga0501073_0082125_582_2174 487
146 3300005616 Ga0068852_100010318 Ga0068852_1000103183 488
147 3300005331 Ga0070670_100038271 Ga0070670_1000382712 489
148 3300005354 Ga0070675_100038276 Ga0070675_1000382762 489
149 3300025925 Ga0207650_10039557 Ga0207650_100395572 489
150 3300025940 Ga0207691_10009401 Ga0207691_100094017 489
151 3300025960 Ga0207651_10035099 Ga0207651_100350992 489
152 3300026142 Ga0207698_10093598 Ga0207698_100935982 489
153 3300039093 Ga0400489_15075 Ga0400489_15075_603_2144 490
154 3300049571 Ga0501034_0010235 Ga0501034_0010235_7183_8691 498
155 3300049580 Ga0501046_0000005 Ga0501046_0000005_377597_379150 502
156 3300003323 rootH1_10059440 rootH1_100594402 516
157 3300029957 Ga0265324_10000012 Ga0265324_10000012174 516
158 3300044765 Ga0466970_0007721 Ga0466970_0007721_3226_4824 516

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01225

Mur_ligase

Mur ligase family, catalytic domain

21

100

0.93

PF02875

Mur_ligase_C

Mur ligase, glutamate ligase domain

365

491

0.93

PF08245

Mur_ligase_M

Mur ligase middle domain

115

344

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
1e8c-assembly1.cif.gz_A structure of mure the udp-n-acetylmuramyl tripeptide synthetase from e. coli 0.9216 1 510
4c12-assembly1.cif.gz_A x-ray crystal structure of staphylococcus aureus mure with udp-murnac- ala-glu-lys and adp 0.921 1 511
1e8c-assembly1.cif.gz_A structure of mure the udp-n-acetylmuramyl tripeptide synthetase from e. coli 0.9096 1 510
4bub-assembly1.cif.gz_A crystal structure of mure ligase from thermotoga maritima in complex with adp 0.9088 1 515
4bub-assembly1.cif.gz_A crystal structure of mure ligase from thermotoga maritima in complex with adp 0.907 1 515
ID Description Score Start End Superfamily
1e8cB03 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9721 362 502 3.90.190.20
1e8cB03 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9584 362 502 3.90.190.20
4c12A03 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9435 362 511 3.90.190.20
4bubB03 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9418 369 515 3.90.190.20
4c13A02 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.9334 106 357 3.40.1190.10
ID Description Score Start End GO Terms
AF-A0A355US68-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9922 376 508 GO:0009058
GO:0016881
AF-A0A7C3UWK1-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9889 379 508 GO:0009058
GO:0016881
AF-A0A448MS15-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase (EC 6.3.2.13) 0.9887 400 504 GO:0008765
GO:0009058
AF-A0A3D6B2Q0-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9875 376 511 GO:0009058
GO:0016881
AF-A0A831RGB2-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9834 356 511 GO:0009058
GO:0016881

Feature Viewer

pLDDT pTM Quality
90.19 0.89 High
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Predicted Structure (AlphaFold2)

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