F230925

General Info

Members Datasets Scaffolds Average Seq Length
158 137 118 621

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2929195423|2929197951
Length 670
Sequence RPLRRLAWLALLWLACAVPAQALQLQVDASGLSAPERAASQALLDAALPKLPPAWAAAIDAPLALQWRDDLPAQVHGRAQARRLLLNKALLRAWMAHPAAGGDDGAGAATRPAIAALLHELAHFYDRSAAGRLSSDPRLLDLAGWQVSPMRLGLRVGDNAFSERSPDRYELASPAEFVAVNLEHFLLDPDYACRRPALAGYFAQRLDWSPPASACAPGLVYLQDPLADEAALLQLDPARVYAVDYLLAEGNAQPMSHWGHSMLRLVICAPGRPPGPDCRLDLAYHKVLSFRAFVDDVQISSMRGLVGSYPSRLFVLPLRQVVDEYTQVQLRGLQSIPLRLAPDEIAALLERAAQLHWSYDGRYYFLSNNCAVETYKLLHDGVPRLAGARLAGISPTGLLRRLARAGIADTRVLDDADAAARQGYYFVPASAHYAAMFAVARAQLALPARTAHAWLDLPAAQRAPWLQRGDLRASAALLLLENAARRRQEQRGRDVLKRRYLAGARLPEAHAGGAGIDAGVDGGADAGADAGAGAGAGIAATAGAAAPVTDAPAADESQKAAAAVRAVLAQQGLLSQPSTLLQGQPGYGLPQAQERDWLQRQGQARIDALHSEGAALQARLHALLPPPLRAELQQIDANLAALGVRLRELNRDGGGLQLVSPSVLQPAAEK

Samples

Sample ID Description Type Environment
1 2510065053 Pseudomonas sp. MOIL14HWK12:I1 Isolate Rhizosphere
2 2510065055 Pseudomonas sp. MOIL14HWK12:I2 Isolate Rhizosphere
3 2510065058 Pseudomonas oleovorans MOIL14HWK12 Isolate Rhizosphere
4 2554235132 Pseudomonas aeruginosa PGPR2 Isolate Unclassified
5 2554235231 Pseudomonas putida MTCC 5279 Isolate Unclassified
6 2597489889 Pseudomonas synxantha BG33R Isolate Rhizosphere
7 2599185167 Pseudomonas sp. NFPP28 Isolate Rhizoplane
8 2599185179 Pseudomonas sp. NFR09 Isolate Rhizoplane
9 2599185190 Pseudomonas sp. NFPP04 Isolate Rhizoplane
10 2599185191 Pseudomonas sp. NFPP24 Isolate Rhizoplane
11 2599185288 Pseudomonas sp. NFACC25 Isolate Rhizoplane
12 2599185290 Pseudomonas sp. NFPP11 Isolate Rhizoplane
13 2606217733 Pseudomonas aeruginosa NFHH01 Isolate Rhizoplane
14 2643221579 Pseudoxanthomonas sp. Root630 Isolate Unclassified
15 2643221695 Lysobacter sp. Root494 Isolate Unclassified
16 2675903420 Pseudomonas fluorescens Ps006 Isolate Unclassified
17 2773857672 Pseudomonas sp. 1766 Isolate Unclassified
18 2818991457 Xanthomonas translucens 569 Isolate Unclassified
19 2823421272 Pseudomonas mendocina S5.2 Isolate Rhizoplane
20 2852684882 Xanthomonas sp. JAI131 Isolate Rhizosphere
21 2894414249 Luteimonas sp. LNNU 24178 Isolate Rhizosphere
22 2917832318 Pseudomonas rhizoryzae RY24 Isolate Unclassified
23 2919125081 Pseudomonas psychrotolerans 1545 Isolate Rhizosphere
24 2919130084 Xanthomonas sp. 1678 Isolate Rhizosphere
25 2919501602 Pseudomonas alcaliphila 3512 Isolate Unclassified
26 2919513703 Luteimonas sp. 3794 Isolate Unclassified
27 2919675420 Luteimonas terrae 4099 Isolate Unclassified
28 2926063275 Pseudomonas sp. 3400 Isolate Unclassified
29 2929195423 Xanthomonas sp. R-73098 Hybrid assembly Isolate Unclassified
30 2931390751 Pseudomonas sp. DR208 Isolate Rhizosphere
31 2974298342 Pseudomonas sp. SORGH_AS 211 Isolate Unclassified
32 2984499530 Pseudomonas sp. SORGH_AS199 Isolate Aerial Root
33 2984504281 Pseudomonas psychrotolerans SORGH_AS201 Isolate Aerial Root
34 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
35 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
36 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
37 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
38 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
39 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
40 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
41 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
42 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
43 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
44 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
45 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
46 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
47 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
48 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
49 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
50 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
51 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
52 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
53 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
54 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
55 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
56 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
57 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
58 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
60 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
74 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
75 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
76 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
77 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
78 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
79 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
80 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
81 3300039145 Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JP6-T1 Metagenome Unclassified
82 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
83 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
84 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
85 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
86 3300042136 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530F_E14_072516_1294 Metagenome Rhizosphere
87 3300042142 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_072516_1610 Metagenome Rhizosphere
88 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
89 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
90 3300042533 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0826F_E14_072516_1472 Metagenome Rhizosphere
91 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
92 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
93 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
94 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
95 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
96 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
97 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
98 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
99 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
100 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
101 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
102 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
103 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
104 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
105 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
106 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
107 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
108 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
109 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
110 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
111 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
112 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
113 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
121 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
122 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
123 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
124 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
125 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
126 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
127 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
128 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
129 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
130 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
131 8002869464 Pseudoxanthomonas helianthi 110414 Isolate Unclassified
132 8003014200 Lysobacter changpingensis Cm-3-T8 Isolate Rhizosphere
133 8011350971 Pseudomonas sp. 30_B Isolate Rhizosphere
134 8021622325 Xanthomonas sp. LMG12462 Isolate Rhizosphere
135 8021626552 Xanthomonas sp. LMG12460 Isolate Rhizosphere
136 8021648035 Xanthomonas sp. LMG 12461 Isolate Rhizosphere
137 8034962539 Pseudomonas sediminis PI11 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 74.68
Metatranscriptomes 0
Isolates 25.32

Biome Distribution

Category Percentage (%)
Aerial Root 1.27
Bulb 0
Endosphere 5.06
Nodule 0
Rhizoplane 5.7
Rhizosphere 70.89
Stem 0
Stem Tuber 0
Unclassified 17.09

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24741J21665_1000755 3300001915 Bacteria 9721
2 Ga0055531_10004122 3300003794 Bacteria 8979
3 Ga0058692_1000060 3300003856 Bacteria 98866
4 Ga0065714_10065806 3300005288 Bacteria 8448
5 Ga0070670_100005652 3300005331 Bacteria 10549
6 Ga0070670_100012694 3300005331 Bacteria 7212
7 Ga0070661_100000237 3300005344 Bacteria 45515
8 Ga0070669_100000277 3300005353 Bacteria 41213
9 Ga0070675_100004933 3300005354 Bacteria 10175
10 Ga0070662_100000063 3300005457 Bacteria 57210
11 Ga0068853_100000143 3300005539 Bacteria 48815
12 Ga0068859_100083892 3300005617 Bacteria 3230
13 Ga0068851_10000018 3300005834 Bacteria 137425
14 Ga0075364_10067116 3300006051 Bacteria 2357
15 Ga0075428_100018048 3300006844 Bacteria 7796
16 Ga0075433_10002826 3300006852 Bacteria 13281
17 Ga0075434_100001351 3300006871 Bacteria 20583
18 Ga0068865_100082156 3300006881 Bacteria 2316
19 Ga0097620_100083897 3300006931 Bacteria 3230
20 Ga0105251_10001076 3300009011 Bacteria 23865
21 Ga0105251_10004701 3300009011 Bacteria 9177
22 Ga0105251_10006536 3300009011 Bacteria 7396
23 Ga0105251_10016718 3300009011 Bacteria 3955
24 Ga0105244_10014826 3300009036 Bacteria 4491
25 Ga0111539_10008350 3300009094 Bacteria 13178
26 Ga0105243_10020218 3300009148 Bacteria 5048
27 Ga0105248_10087384 3300009177 Bacteria 3509
28 Ga0182008_10034299 3300014497 Bacteria 2545
29 Ga0182008_10041340 3300014497 Bacteria 2299
30 Ga0209676_1003532 3300025292 Bacteria 9525
31 Ga0209676_1005433 3300025292 Bacteria 6660
32 Ga0209025_1010913 3300025294 Bacteria 6080
33 Ga0209257_1000263 3300025304 Bacteria 120530
34 Ga0207656_10000009 3300025321 Bacteria 245637
35 Ga0207696_1005348 3300025711 Bacteria 5338
36 Ga0207655_1000548 3300025728 Bacteria 47302
37 Ga0207713_1004371 3300025735 Bacteria 9183
38 Ga0207713_1004752 3300025735 Bacteria 8727
39 Ga0207681_10000291 3300025923 Bacteria 37201
40 Ga0207650_10000407 3300025925 Bacteria 38580
41 Ga0207659_10058354 3300025926 Bacteria 2770
42 Ga0207706_10000050 3300025933 Bacteria 116811
43 Ga0207709_10018242 3300025935 Bacteria 3926
44 Ga0207711_10044580 3300025941 Bacteria 3787
45 Ga0207639_10000079 3300026041 Bacteria 83859
46 Ga0207648_10078481 3300026089 Bacteria 2880
47 Ga0209371_1000139 3300027312 Bacteria 120350
48 Ga0207428_10020804 3300027907 Bacteria 5565
49 Ga0268256_1000109 3300030500 Bacteria 120350
50 Ga0307408_100000028 3300031548 Bacteria 233440
51 Ga0307413_10001980 3300031824 Bacteria 8131
52 Ga0307412_10030185 3300031911 Bacteria 3410
53 Ga0307416_100006723 3300032002 Bacteria 7226
54 Ga0307414_10004260 3300032004 Bacteria 7761
55 Ga0307414_10038814 3300032004 Bacteria 3201
56 Ga0307414_10084438 3300032004 Bacteria 2335
57 Ga0237816_00136 3300039145 Bacteria 5722
58 Ga0439465_0000040 3300041413 Bacteria 26319
59 Ga0439465_0000996 3300041413 Bacteria 9020
60 Ga0439465_0002646 3300041413 Bacteria 5850
61 Ga0439432_020087 3300042006 Bacteria 2222
62 Ga0439449_0000134 3300042007 Bacteria 25113
63 Ga0450923_003383 3300042125 Bacteria 2404
64 Ga0450900_000332 3300042136 Bacteria 3469
65 Ga0450905_000157 3300042142 Bacteria 7279
66 Ga0439446_0000557 3300042156 Bacteria 7548
67 Ga0439434_0008022 3300042435 Bacteria 3094
68 Ga0450901_000209 3300042533 Bacteria 6957
69 Ga0453684_0009446 3300044712 Bacteria 17059
70 Ga0451576_0080113 3300045051 Bacteria 3398
71 Ga0495627_000115 3300046453 Bacteria 99960
72 Ga0495627_006774 3300046453 Bacteria 4457
73 Ga0495591_000061 3300046458 Bacteria 126594
74 Ga0495605_0005398 3300046474 Bacteria 7449
75 Ga0495607_0000147 3300046501 Bacteria 74197
76 Ga0495607_0000560 3300046501 Bacteria 36227
77 Ga0495606_0028322 3300046507 Bacteria 3955
78 Ga0495637_0004113 3300046520 Bacteria 7580
79 Ga0495637_0006224 3300046520 Bacteria 6002
80 Ga0495663_0000499 3300046525 Bacteria 14134
81 Ga0495597_0001045 3300046542 Bacteria 21150
82 Ga0495625_0046641 3300046660 Bacteria 3126
83 Ga0495660_0000190 3300046810 Bacteria 64685
84 Ga0495660_0001872 3300046810 Bacteria 13814
85 Ga0495660_0045813 3300046810 Bacteria 2399
86 Ga0495672_0008528 3300047320 Bacteria 7548
87 Ga0495672_0011889 3300047320 Bacteria 6108
88 Ga0496114_0047988 3300048917 Bacteria 3551
89 Ga0496117_0001191 3300048920 Bacteria 39121
90 Ga0496118_0032826 3300048921 Bacteria 4268
91 Ga0496119_0002285 3300048922 Bacteria 21233
92 Ga0496120_0000676 3300048923 Bacteria 50058
93 Ga0496122_0000901 3300048925 Bacteria 54955
94 Ga0496123_0000727 3300048926 Bacteria 53518
95 Ga0496123_0029353 3300048926 Bacteria 4051
96 Ga0496124_0000511 3300048927 Bacteria 66830
97 Ga0496124_0001061 3300048927 Bacteria 43394
98 Ga0496124_0020802 3300048927 Bacteria 6056
99 Ga0496126_0125432 3300048929 Bacteria 2222
100 Ga0501031_0019155 3300049568 Bacteria 4456
101 Ga0501032_0003555 3300049569 Bacteria 11888
102 Ga0501033_0058376 3300049570 Bacteria 2850
103 Ga0501034_0000380 3300049571 Bacteria 75822
104 Ga0501038_0013051 3300049574 Bacteria 7578
105 Ga0501038_0019519 3300049574 Bacteria 6109
106 Ga0501039_0110801 3300049575 Bacteria 2146
107 Ga0501047_0058891 3300049581 Bacteria 3710
108 Ga0501067_0011060 3300049583 Bacteria 4992
109 Ga0501073_0001429 3300049589 Bacteria 17650
110 Ga0501074_0005518 3300049590 Bacteria 9102
111 Ga0501077_0004031 3300049593 Bacteria 8865
112 Ga0501225_0005978 3300049705 Bacteria 3558
113 Ga0501035_0026981 3300049822 Bacteria 5252
114 nmdc:mga00v17_31031_c1 3300050491 Bacteria 3149
115 nmdc:mga0rr50_1506_c1 3300050513 Bacteria 12820
116 nmdc:mga0a205_304_c1 3300050515 Bacteria 36438
117 Ga0500573_0016709 3300053140 Bacteria 4169
118 Ga0501082_0004215 3300060353 Bacteria 12564

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046660 Ga0495625_0046641 Ga0495625_0046641_25_1638 532
2 3300003856 Ga0058692_1000060 Ga0058692_100006040 538
3 3300009148 Ga0105243_10020218 Ga0105243_100202184 538
4 3300025935 Ga0207709_10018242 Ga0207709_100182422 538
5 3300027312 Ga0209371_1000139 Ga0209371_100013940 538
6 3300030500 Ga0268256_1000109 Ga0268256_100010962 538
7 3300005331 Ga0070670_100012694 Ga0070670_1000126946 539
8 3300048925 Ga0496122_0000901 Ga0496122_0000901_39058_41028 539
9 3300048926 Ga0496123_0000727 Ga0496123_0000727_39324_41294 539
10 3300048920 Ga0496117_0001191 Ga0496117_0001191_24913_26883 540
11 3300048921 Ga0496118_0032826 Ga0496118_0032826_282_2252 540
12 3300048922 Ga0496119_0002285 Ga0496119_0002285_7031_9001 540
13 3300048923 Ga0496120_0000676 Ga0496120_0000676_12259_14229 540
14 3300048927 Ga0496124_0001061 Ga0496124_0001061_29204_31174 549
15 3300049574 Ga0501038_0019519 Ga0501038_0019519_2191_3960 560
16 3300025292 Ga0209676_1005433 Ga0209676_10054334 561
17 3300049575 Ga0501039_0110801 Ga0501039_0110801_301_2070 567
18 3300039145 Ga0237816_00136 Ga0237816_00136_1538_3553 569
19 3300049571 Ga0501034_0000380 Ga0501034_0000380_12110_13879 569
20 3300025292 Ga0209676_1003532 Ga0209676_10035323 572
21 3300042435 Ga0439434_0008022 Ga0439434_0008022_97_1911 572
22 3300048926 Ga0496123_0029353 Ga0496123_0029353_520_2391 572
23 3300049581 Ga0501047_0058891 Ga0501047_0058891_998_2767 574
24 iso_pu_bacteria 2852684882 2852685524 575
25 3300049569 Ga0501032_0003555 Ga0501032_0003555_7063_8922 576
26 3300049570 Ga0501033_0058376 Ga0501033_0058376_874_2643 576
27 3300049574 Ga0501038_0013051 Ga0501038_0013051_4996_6855 576
28 3300049822 Ga0501035_0026981 Ga0501035_0026981_1200_2969 576
29 3300050515 nmdc:mga0a205_304_c1 nmdc:mga0a205_304_c1_30463_32268 578
30 3300049568 Ga0501031_0019155 Ga0501031_0019155_1941_3764 580
31 3300032004 Ga0307414_10084438 Ga0307414_100844382 585
32 3300048929 Ga0496126_0125432 Ga0496126_0125432_385_2208 586
33 3300025304 Ga0209257_1000263 Ga0209257_100026347 588
34 3300049583 Ga0501067_0011060 Ga0501067_0011060_1544_3415 588
35 3300049589 Ga0501073_0001429 Ga0501073_0001429_10740_12599 588
36 3300049590 Ga0501074_0005518 Ga0501074_0005518_7045_8904 588
37 3300049593 Ga0501077_0004031 Ga0501077_0004031_3401_5260 588
38 3300060353 Ga0501082_0004215 Ga0501082_0004215_6461_8320 588
39 iso_pu_bacteria 8021626552 8021626608 589
40 iso_pu_bacteria 8021648035 8021649096 589
41 3300006852 Ga0075433_10002826 Ga0075433_1000282615 590
42 3300006871 Ga0075434_100001351 Ga0075434_1000013514 590
43 3300041413 Ga0439465_0000996 Ga0439465_0000996_7209_8999 590
44 3300050513 nmdc:mga0rr50_1506_c1 nmdc:mga0rr50_1506_c1_10283_12142 590
45 3300041413 Ga0439465_0000040 Ga0439465_0000040_13647_15530 591
46 3300042007 Ga0439449_0000134 Ga0439449_0000134_5402_7285 591
47 iso_pu_bacteria 2643221579 2643907994 592
48 3300006844 Ga0075428_100018048 Ga0075428_1000180483 593
49 3300009094 Ga0111539_10008350 Ga0111539_100083505 593
50 3300027907 Ga0207428_10020804 Ga0207428_100208042 593
51 iso_pu_bacteria 2919513703 2919517208 593
52 iso_pu_bacteria 2919675420 2919677059 593
53 3300042156 Ga0439446_0000557 Ga0439446_0000557_2569_4452 594
54 3300006051 Ga0075364_10067116 Ga0075364_100671162 595
55 3300041413 Ga0439465_0002646 Ga0439465_0002646_2735_4594 596
56 3300031911 Ga0307412_10030185 Ga0307412_100301852 598
57 3300032002 Ga0307416_100006723 Ga0307416_1000067233 598
58 3300042125 Ga0450923_003383 Ga0450923_003383_219_2078 598
59 3300049705 Ga0501225_0005978 Ga0501225_0005978_1625_3469 599
60 iso_pu_bacteria 8003014200 8003016195 599
61 3300025294 Ga0209025_1010913 Ga0209025_10109133 600
62 iso_pu_bacteria 2643221695 2644529149 600
63 3300031548 Ga0307408_100000028 Ga0307408_100000028201 601
64 3300042006 Ga0439432_020087 Ga0439432_020087_106_1932 601
65 3300032004 Ga0307414_10004260 Ga0307414_100042603 603
66 iso_pu_bacteria 2894414249 2894415240 603
67 3300032004 Ga0307414_10038814 Ga0307414_100388143 605
68 3300003794 Ga0055531_10004122 Ga0055531_100041227 607
69 3300046525 Ga0495663_0000499 Ga0495663_0000499_7219_9060 607
70 iso_pu_bacteria 8002869464 8002871865 608
71 iso_pu_bacteria 2818991457 2819659673 609
72 iso_pu_bacteria 2919130084 2919131679 609
73 iso_pu_bacteria 2929195423 2929197951 609
74 iso_pu_bacteria 8021622325 8021624261 609
75 3300005354 Ga0070675_100004933 Ga0070675_1000049338 610
76 3300006881 Ga0068865_100082156 Ga0068865_1000821562 610
77 3300025926 Ga0207659_10058354 Ga0207659_100583542 610
78 3300026089 Ga0207648_10078481 Ga0207648_100784812 610
79 3300005617 Ga0068859_100083892 Ga0068859_1000838923 611
80 3300006931 Ga0097620_100083897 Ga0097620_1000838973 611
81 3300044712 Ga0453684_0009446 Ga0453684_0009446_836_2716 611
82 3300045051 Ga0451576_0080113 Ga0451576_0080113_681_2561 611
83 3300050491 nmdc:mga00v17_31031_c1 nmdc:mga00v17_31031_c1_1176_3113 611
84 3300031824 Ga0307413_10001980 Ga0307413_100019806 612
85 3300046520 Ga0495637_0006224 Ga0495637_0006224_341_2257 621
86 3300046810 Ga0495660_0045813 Ga0495660_0045813_101_2026 626
87 3300042142 Ga0450905_000157 Ga0450905_000157_3523_5472 631
88 3300048927 Ga0496124_0020802 Ga0496124_0020802_2642_4591 631
89 3300042136 Ga0450900_000332 Ga0450900_000332_1006_2955 632
90 3300042533 Ga0450901_000209 Ga0450901_000209_1222_3171 632
91 3300046507 Ga0495606_0028322 Ga0495606_0028322_764_2725 636
92 3300047320 Ga0495672_0008528 Ga0495672_0008528_4334_6295 636
93 3300005288 Ga0065714_10065806 Ga0065714_100658063 637
94 3300005331 Ga0070670_100005652 Ga0070670_1000056523 637
95 3300025925 Ga0207650_10000407 Ga0207650_1000040724 637
96 3300005344 Ga0070661_100000237 Ga0070661_10000023731 638
97 3300009011 Ga0105251_10016718 Ga0105251_100167184 638
98 3300025711 Ga0207696_1005348 Ga0207696_10053485 638
99 3300025735 Ga0207713_1004752 Ga0207713_10047529 638
100 3300046810 Ga0495660_0000190 Ga0495660_0000190_46775_48736 643
101 iso_pu_bacteria 8011350971 8011356133 645
102 3300046474 Ga0495605_0005398 Ga0495605_0005398_4901_6862 646
103 iso_pu_bacteria 2554235132 2554818590 646
104 iso_pu_bacteria 2606217733 2608384252 646
105 3300046501 Ga0495607_0000560 Ga0495607_0000560_8749_10710 647
106 3300047320 Ga0495672_0011889 Ga0495672_0011889_1505_3466 647
107 iso_pu_bacteria 2823421272 2823421452 647
108 iso_pu_bacteria 2919501602 2919503086 647
109 iso_pu_bacteria 2926063275 2926064760 647
110 iso_pu_bacteria 8034962539 8034964445 647
111 3300025728 Ga0207655_1000548 Ga0207655_100054813 648
112 3300046453 Ga0495627_000115 Ga0495627_000115_85983_87944 648
113 3300046458 Ga0495591_000061 Ga0495591_000061_113865_115826 648
114 3300046501 Ga0495607_0000147 Ga0495607_0000147_61353_63314 648
115 3300046520 Ga0495637_0004113 Ga0495637_0004113_1295_3256 648
116 3300046542 Ga0495597_0001045 Ga0495597_0001045_10771_12732 648
117 3300046810 Ga0495660_0001872 Ga0495660_0001872_3040_5001 648
118 3300048927 Ga0496124_0000511 Ga0496124_0000511_10809_12770 648
119 3300053140 Ga0500573_0016709 Ga0500573_0016709_1459_3420 648
120 iso_pu_bacteria 2554235231 2555245332 648
121 3300009011 Ga0105251_10001076 Ga0105251_1000107619 649
122 3300048917 Ga0496114_0047988 Ga0496114_0047988_30_1979 649
123 iso_pu_bacteria 2510065053 2510282602 649
124 iso_pu_bacteria 2510065055 2510295254 649
125 iso_pu_bacteria 2510065058 2510311118 649
126 iso_pu_bacteria 2597489889 2597867045 649
127 iso_pu_bacteria 2599185167 2599401185 649
128 iso_pu_bacteria 2599185179 2599449482 649
129 iso_pu_bacteria 2599185190 2599516486 649
130 iso_pu_bacteria 2599185191 2599516528 649
131 iso_pu_bacteria 2599185288 2599879419 649
132 iso_pu_bacteria 2599185290 2599895852 649
133 iso_pu_bacteria 2675903420 2677900371 649
134 iso_pu_bacteria 2773857672 2774129108 649
135 iso_pu_bacteria 2917832318 2917836702 649
136 iso_pu_bacteria 2919125081 2919126245 649
137 iso_pu_bacteria 2931390751 2931391042 649
138 iso_pu_bacteria 2974298342 2974302231 649
139 iso_pu_bacteria 2984499530 2984500197 649
140 iso_pu_bacteria 2984504281 2984506644 649
141 3300009036 Ga0105244_10014826 Ga0105244_100148263 651
142 3300009011 Ga0105251_10006536 Ga0105251_100065363 652
143 3300001915 JGI24741J21665_1000755 JGI24741J21665_10007554 653
144 3300005353 Ga0070669_100000277 Ga0070669_10000027713 653
145 3300005457 Ga0070662_100000063 Ga0070662_10000006310 653
146 3300005539 Ga0068853_100000143 Ga0068853_10000014334 653
147 3300005834 Ga0068851_10000018 Ga0068851_1000001813 653
148 3300009011 Ga0105251_10004701 Ga0105251_1000470110 653
149 3300009177 Ga0105248_10087384 Ga0105248_100873844 653
150 3300014497 Ga0182008_10034299 Ga0182008_100342992 653
151 3300014497 Ga0182008_10041340 Ga0182008_100413402 653
152 3300025321 Ga0207656_10000009 Ga0207656_1000000913 653
153 3300025735 Ga0207713_1004371 Ga0207713_10043712 653
154 3300025923 Ga0207681_10000291 Ga0207681_1000029113 653
155 3300025933 Ga0207706_10000050 Ga0207706_1000005013 653
156 3300025941 Ga0207711_10044580 Ga0207711_100445804 653
157 3300026041 Ga0207639_10000079 Ga0207639_1000007913 653
158 3300046453 Ga0495627_006774 Ga0495627_006774_1827_3788 653

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13387

DUF4105

Domain of unknown function (DUF4105)

228

404

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
3edi-assembly1.cif.gz_A crystal structure of tolloid-like protease 1 (tll-1) protease domain 0.5588 24 97
5xbv-assembly1.cif.gz_A crystal structure of wss1 mutant from saccharomyces cerevisiae 0.4687 24 159
5xbv-assembly1.cif.gz_A crystal structure of wss1 mutant from saccharomyces cerevisiae 0.4514 24 159
4ckg-assembly1.cif.gz_B helical reconstruction of acap1(bar-ph domain) decorated membrane tubules by cryo-electron microscopy 0.297 440 648
2jsw-assembly1.cif.gz_A solution structure of the r13 domain of talin 0.2818 471 652
ID Description Score Start End Superfamily
3ediA00 Alpha Beta;3-Layer(aba) Sandwich;Collagenase (Catalytic Domain);Collagenase (Catalytic Domain) 0.5588 24 97 3.40.390.10
af_Q4DNK3_12_180_3.40.390.10 Alpha Beta;3-Layer(aba) Sandwich;Collagenase (Catalytic Domain);Collagenase (Catalytic Domain) 0.5012 24 151 3.40.390.10
1iaaA00 Alpha Beta;3-Layer(aba) Sandwich;Collagenase (Catalytic Domain);Collagenase (Catalytic Domain) 0.4761 24 91 3.40.390.10
af_O16977_155_395_3.40.390.10 Alpha Beta;3-Layer(aba) Sandwich;Collagenase (Catalytic Domain);Collagenase (Catalytic Domain) 0.4517 24 129 3.40.390.10
af_Q55CA5_72_237_3.40.390.10 Alpha Beta;3-Layer(aba) Sandwich;Collagenase (Catalytic Domain);Collagenase (Catalytic Domain) 0.4476 29 154 3.40.390.10
ID Description Score Start End GO Terms
AF-S6V1V4-F1-model_v4 DUF4105 domain-containing protein 0.9696 184 653
AF-S6V1V4-F1-model_v4 DUF4105 domain-containing protein 0.9676 184 653
AF-Q9HTA6-F1-model_v4 DUF4105 domain-containing protein 0.9639 1 653
AF-Q9HTA6-F1-model_v4 DUF4105 domain-containing protein 0.9625 1 653
AF-A0A4Q6FIP4-F1-model_v4 deleted 0.9508 17 510

Feature Viewer

pLDDT pTM Quality
83.54 0.83 High
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Predicted Structure (AlphaFold2)

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