F232175
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 159 | 116 | 316 | 276 |
Family's Representative Sequence
| Representative Sequence | 3300013296|Ga0157374_10352400|Ga0157374_103524002 |
| Length | 314 |
| Sequence | MHDNGMTNNMCYFIPKFAYCMIDKMDLFTKTCFGCSKLITNNYSTSFSLGIKAFDKRFRDAIYAIYGFVRYADEIVDTFHNQDKAALIAGFGEETFKAIEQGISLNPVLQSFQVTVNRYRLANELIEAFLRSMEMDLDKTVYTEDGYQQYIYGSAEVIGLMCLRVFCEEDETLYNALLPKARSLGSAFQKINFLRDLRSDFEDRGRMYFPGVNFNHFSESDKKAIEADIKIDFDDALAGIRQLPQGTRLGVYIAYVYYLQLFKKIADTPAAALIQKRIRVPDTQKMALYAKAVLQQKLNMIGSLRCSYFCSRSR |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 2 | 3300001904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 | Metagenome | Rhizosphere |
| 3 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 4 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 5 | 3300005288 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) | Metagenome | Rhizosphere |
| 6 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 7 | 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 9 | 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Metagenome | Rhizosphere |
| 10 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Metagenome | Rhizosphere |
| 15 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 16 | 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Metagenome | Rhizosphere |
| 17 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 18 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 19 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 20 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 21 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 22 | 3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Metagenome | Rhizosphere |
| 23 | 3300006195 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 | Metagenome | Endosphere |
| 24 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 25 | 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Metagenome | Rhizosphere |
| 26 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 27 | 3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Metagenome | Rhizosphere |
| 28 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 29 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 30 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 31 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 32 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 33 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 34 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 35 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 36 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 37 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 38 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 39 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 40 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 41 | 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Metagenome | Rhizosphere |
| 42 | 3300025250 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) | Metagenome | Unclassified |
| 43 | 3300025899 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 47 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 48 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 49 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 50 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 51 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 52 | 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300028786 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM | Metagenome | Unclassified |
| 63 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 64 | 3300031911 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 | Metagenome | Rhizosphere |
| 65 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 66 | 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Metagenome | Rhizosphere |
| 67 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 68 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 69 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 70 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 71 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 72 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 73 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 74 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 75 | 3300044673 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED | Metagenome | Rhizosphere |
| 76 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 77 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 78 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 79 | 3300046506 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere | Metagenome | Rhizosphere |
| 80 | 3300046507 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere | Metagenome | Rhizosphere |
| 81 | 3300046518 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere | Metagenome | Rhizosphere |
| 82 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 83 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 84 | 3300046694 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere | Metagenome | Rhizosphere |
| 85 | 3300047323 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere | Metagenome | Rhizosphere |
| 86 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 87 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 88 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 89 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 90 | 3300049568 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 91 | 3300049569 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 92 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 93 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 94 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 95 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 96 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 97 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 98 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 99 | 3300049649 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought | Metagenome | Rhizosphere |
| 100 | 3300049663 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought | Metagenome | Rhizosphere |
| 101 | 3300049758 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought | Metagenome | Rhizosphere |
| 102 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 103 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 104 | 3300049824 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 105 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 106 | 3300050493 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation | Metagenome | Endosphere |
| 107 | 3300053122 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere | Metagenome | Endosphere |
| 108 | 3300053151 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere | Metagenome | Endosphere |
| 109 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 110 | 2739367866 | Hymenobacter sp. YR204 | Isolate | Unclassified |
| 111 | 2839989709 | Pontibacter arcticus 2b14 | Isolate | Unclassified |
| 112 | 2852623160 | Mucilaginibacter sp. AK015 | Isolate | Rhizosphere |
| 113 | 2884634485 | Algoriphagus kandeliae XY-J91 | Isolate | Unclassified |
| 114 | 2884933994 | Mucilaginibacter sp. 14171R-50 | Isolate | Rhizosphere |
| 115 | 2902048731 | Pedobacter ureilyticus THG-T11 | Isolate | Rhizosphere |
| 116 | 2911138879 | Spirosoma sp. KUDC1026 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 95.6 |
| Metatranscriptomes | 0 |
| Isolates | 4.4 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 6.29 |
| Nodule | 0 |
| Rhizoplane | 0.63 |
| Rhizosphere | 84.91 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 5.66 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0157374_10352400 | 3300013296 | Bacteria | 1463 |
| 2 | JGI24736J21556_1009696 | 3300001904 | Unclassified | 1582 |
| 3 | rootH2_10001535 | 3300003320 | Bacteria | 91957 |
| 4 | rootH2_10024039 | 3300003320 | Bacteria | 38953 |
| 5 | rootH1_10307517 | 3300003323 | Unclassified | 1222 |
| 6 | rootH1_10318169 | 3300003323 | Bacteria | 2647 |
| 7 | Ga0065714_10074252 | 3300005288 | Bacteria | 3064 |
| 8 | Ga0065704_10174906 | 3300005289 | Bacteria | 1269 |
| 9 | Ga0070676_10001528 | 3300005328 | Bacteria | 11703 |
| 10 | Ga0070683_100140261 | 3300005329 | Bacteria | 2290 |
| 11 | Ga0068868_100045584 | 3300005338 | Bacteria | 3430 |
| 12 | Ga0068868_100052890 | 3300005338 | Bacteria | 3198 |
| 13 | Ga0070660_100106776 | 3300005339 | Bacteria | 2224 |
| 14 | Ga0070673_100020438 | 3300005364 | Bacteria | 4777 |
| 15 | Ga0070673_100650442 | 3300005364 | Bacteria | 965 |
| 16 | Ga0070659_100003735 | 3300005366 | Bacteria | 10858 |
| 17 | Ga0070659_100131504 | 3300005366 | Bacteria | 2033 |
| 18 | Ga0070662_100001673 | 3300005457 | Bacteria | 13641 |
| 19 | Ga0070662_100264702 | 3300005457 | Bacteria | 1386 |
| 20 | Ga0068867_100008600 | 3300005459 | Bacteria | 7207 |
| 21 | Ga0070684_100170910 | 3300005535 | Unclassified | 1974 |
| 22 | Ga0070672_100129226 | 3300005543 | Bacteria | 2075 |
| 23 | Ga0070665_100000178 | 3300005548 | Bacteria | 113002 |
| 24 | Ga0068855_100073326 | 3300005563 | Bacteria | 3977 |
| 25 | Ga0068855_100379533 | 3300005563 | Bacteria | 1552 |
| 26 | Ga0068857_100754041 | 3300005577 | Bacteria | 927 |
| 27 | Ga0068856_100066917 | 3300005614 | Bacteria | 3550 |
| 28 | Ga0068852_100016941 | 3300005616 | Bacteria | 5701 |
| 29 | Ga0068866_10024763 | 3300005718 | Bacteria | 2813 |
| 30 | Ga0075366_10000118 | 3300006195 | Bacteria | 32499 |
| 31 | Ga0075366_10000120 | 3300006195 | Bacteria | 32483 |
| 32 | Ga0097621_100002043 | 3300006237 | Bacteria | 13804 |
| 33 | Ga0068871_100003586 | 3300006358 | Bacteria | 10667 |
| 34 | Ga0075428_100340453 | 3300006844 | Unclassified | 1610 |
| 35 | Ga0068865_100000129 | 3300006881 | Bacteria | 39057 |
| 36 | Ga0105240_10287323 | 3300009093 | Bacteria | 1887 |
| 37 | Ga0105241_10007734 | 3300009174 | Bacteria | 7901 |
| 38 | Ga0105241_10009796 | 3300009174 | Bacteria | 7041 |
| 39 | Ga0105241_10174283 | 3300009174 | Bacteria | 1779 |
| 40 | Ga0105242_10024500 | 3300009176 | Bacteria | 4767 |
| 41 | Ga0105237_10006951 | 3300009545 | Bacteria | 12476 |
| 42 | Ga0105238_10012421 | 3300009551 | Bacteria | 8590 |
| 43 | Ga0105239_10078993 | 3300010375 | Bacteria | 3621 |
| 44 | Ga0105239_10098835 | 3300010375 | Bacteria | 3226 |
| 45 | Ga0157373_10000090 | 3300013100 | Bacteria | 78142 |
| 46 | Ga0157373_10120146 | 3300013100 | Bacteria | 1847 |
| 47 | Ga0157371_10013069 | 3300013102 | Bacteria | 6321 |
| 48 | Ga0157371_10264673 | 3300013102 | Bacteria | 1240 |
| 49 | Ga0157370_10005848 | 3300013104 | Bacteria | 13740 |
| 50 | Ga0157369_10046073 | 3300013105 | Bacteria | 4740 |
| 51 | Ga0157369_10058798 | 3300013105 | Bacteria | 4146 |
| 52 | Ga0157374_10002197 | 3300013296 | Bacteria | 16450 |
| 53 | Ga0157374_10096431 | 3300013296 | Bacteria | 2829 |
| 54 | Ga0157378_10041670 | 3300013297 | Bacteria | 4073 |
| 55 | Ga0157372_10000030 | 3300013307 | Bacteria | 179925 |
| 56 | Ga0157372_10018368 | 3300013307 | Bacteria | 7516 |
| 57 | Ga0157372_10075529 | 3300013307 | Bacteria | 3803 |
| 58 | Ga0157372_10640735 | 3300013307 | Unclassified | 1238 |
| 59 | Ga0157380_10000243 | 3300014326 | Bacteria | 32734 |
| 60 | Ga0157377_10173800 | 3300014745 | Bacteria | 1349 |
| 61 | Ga0209026_1000304 | 3300025250 | Bacteria | 53704 |
| 62 | Ga0207642_10106160 | 3300025899 | Unclassified | 1421 |
| 63 | Ga0207647_10017463 | 3300025904 | Bacteria | 4877 |
| 64 | Ga0207645_10000099 | 3300025907 | Bacteria | 64087 |
| 65 | Ga0207654_10010320 | 3300025911 | Bacteria | 4754 |
| 66 | Ga0207654_10038783 | 3300025911 | Bacteria | 2675 |
| 67 | Ga0207695_10000048 | 3300025913 | Bacteria | 421800 |
| 68 | Ga0207695_10007718 | 3300025913 | Bacteria | 13624 |
| 69 | Ga0207695_10026207 | 3300025913 | Bacteria | 6508 |
| 70 | Ga0207671_10002527 | 3300025914 | Bacteria | 19488 |
| 71 | Ga0207671_10024222 | 3300025914 | Bacteria | 4568 |
| 72 | Ga0207694_10020085 | 3300025924 | Bacteria | 5052 |
| 73 | Ga0207690_10000123 | 3300025932 | Bacteria | 64409 |
| 74 | Ga0207690_10150335 | 3300025932 | Bacteria | 1726 |
| 75 | Ga0207706_10000138 | 3300025933 | Bacteria | 79643 |
| 76 | Ga0207706_10294831 | 3300025933 | Bacteria | 1414 |
| 77 | Ga0207704_10000015 | 3300025938 | Bacteria | 163572 |
| 78 | Ga0207661_10106883 | 3300025944 | Bacteria | 2359 |
| 79 | Ga0207667_10008279 | 3300025949 | Bacteria | 12371 |
| 80 | Ga0207651_10007149 | 3300025960 | Bacteria | 5932 |
| 81 | Ga0207677_10005540 | 3300026023 | Bacteria | 6858 |
| 82 | Ga0207677_10026179 | 3300026023 | Bacteria | 3654 |
| 83 | Ga0207639_10038020 | 3300026041 | Bacteria | 3578 |
| 84 | Ga0207702_10004978 | 3300026078 | Bacteria | 11667 |
| 85 | Ga0207648_10015352 | 3300026089 | Bacteria | 7046 |
| 86 | Ga0207698_10016860 | 3300026142 | Bacteria | 4938 |
| 87 | Ga0268266_10000098 | 3300028379 | Bacteria | 182784 |
| 88 | Ga0307517_10001604 | 3300028786 | Bacteria | 37610 |
| 89 | Ga0307515_10054601 | 3300028794 | Bacteria | 5861 |
| 90 | Ga0307412_10601206 | 3300031911 | Unclassified | 931 |
| 91 | Ga0307414_10054849 | 3300032004 | Bacteria | 2787 |
| 92 | Ga0307411_10009510 | 3300032005 | Bacteria | 5116 |
| 93 | Ga0307510_10012029 | 3300033180 | Bacteria | 10257 |
| 94 | Ga0395899_0000394 | 3300037312 | Bacteria | 51861 |
| 95 | Ga0395899_0106834 | 3300037312 | Bacteria | 2015 |
| 96 | Ga0395900_0001213 | 3300037418 | Bacteria | 31865 |
| 97 | Ga0395900_0062859 | 3300037418 | Bacteria | 3816 |
| 98 | Ga0395898_0133719 | 3300037466 | Bacteria | 2375 |
| 99 | Ga0395905_0002112 | 3300037471 | Bacteria | 22578 |
| 100 | Ga0395901_0001041 | 3300038443 | Bacteria | 29939 |
| 101 | Ga0436361_0995481 | 3300039447 | Bacteria | 23100 |
| 102 | Ga0451577_0011587 | 3300042876 | Bacteria | 8331 |
| 103 | Ga0451577_0161541 | 3300042876 | Bacteria | 2017 |
| 104 | Ga0451577_0588380 | 3300042876 | Unclassified | 1010 |
| 105 | Ga0453683_0038298 | 3300044673 | Bacteria | 3014 |
| 106 | Ga0453684_0002532 | 3300044712 | Bacteria | 44022 |
| 107 | Ga0453684_0002939 | 3300044712 | Bacteria | 39971 |
| 108 | Ga0453684_0017686 | 3300044712 | Bacteria | 11015 |
| 109 | Ga0453684_0025043 | 3300044712 | Bacteria | 8683 |
| 110 | Ga0453684_0268555 | 3300044712 | Bacteria | 1951 |
| 111 | Ga0451576_0012810 | 3300045051 | Bacteria | 9410 |
| 112 | Ga0451576_0035783 | 3300045051 | Bacteria | 5266 |
| 113 | Ga0451576_0036896 | 3300045051 | Bacteria | 5179 |
| 114 | Ga0451576_0068772 | 3300045051 | Bacteria | 3685 |
| 115 | Ga0451576_0098842 | 3300045051 | Unclassified | 3035 |
| 116 | Ga0495638_0000015 | 3300046460 | Bacteria | 414645 |
| 117 | Ga0495583_0105315 | 3300046506 | Bacteria | 1200 |
| 118 | Ga0495606_0005383 | 3300046507 | Bacteria | 12275 |
| 119 | Ga0495631_0004751 | 3300046518 | Bacteria | 7174 |
| 120 | Ga0495668_0155859 | 3300046616 | Bacteria | 1251 |
| 121 | Ga0495625_0182575 | 3300046660 | Bacteria | 1394 |
| 122 | Ga0495649_0017256 | 3300046694 | Bacteria | 4075 |
| 123 | Ga0495683_0034963 | 3300047323 | Bacteria | 2554 |
| 124 | Ga0495686_0000005 | 3300047472 | Bacteria | 827143 |
| 125 | Ga0496115_0124544 | 3300048918 | Bacteria | 2122 |
| 126 | Ga0496125_0000310 | 3300048928 | Bacteria | 95700 |
| 127 | Ga0496126_0112809 | 3300048929 | Bacteria | 2367 |
| 128 | Ga0501031_0008174 | 3300049568 | Bacteria | 6809 |
| 129 | Ga0501032_0017859 | 3300049569 | Bacteria | 4977 |
| 130 | Ga0501033_0000034 | 3300049570 | Bacteria | 152329 |
| 131 | Ga0501034_0000823 | 3300049571 | Bacteria | 46187 |
| 132 | Ga0501034_0008038 | 3300049571 | Bacteria | 11191 |
| 133 | Ga0501036_0023073 | 3300049572 | Bacteria | 5237 |
| 134 | Ga0501037_0003401 | 3300049573 | Bacteria | 11573 |
| 135 | Ga0501038_0024914 | 3300049574 | Bacteria | 5332 |
| 136 | Ga0501039_0001332 | 3300049575 | Bacteria | 18060 |
| 137 | Ga0501043_0000923 | 3300049579 | Bacteria | 26062 |
| 138 | Ga0501198_011046 | 3300049649 | Bacteria | 1342 |
| 139 | Ga0501223_000391 | 3300049663 | Bacteria | 10802 |
| 140 | Ga0501241_000370 | 3300049758 | Bacteria | 9874 |
| 141 | Ga0501035_0002384 | 3300049822 | Bacteria | 18456 |
| 142 | Ga0501044_0012839 | 3300049823 | Bacteria | 9069 |
| 143 | Ga0501045_0000118 | 3300049824 | Bacteria | 40712 |
| 144 | nmdc:mga00v17_266324_c1 | 3300050491 | Bacteria | 1112 |
| 145 | nmdc:mga0k408_189_c1 | 3300050493 | Bacteria | 32515 |
| 146 | nmdc:mga0k408_334635_c1 | 3300050493 | Bacteria | 903 |
| 147 | nmdc:mga0k408_60_c1 | 3300050493 | Bacteria | 54928 |
| 148 | Ga0500608_007801 | 3300053122 | Bacteria | 4452 |
| 149 | Ga0500604_0004533 | 3300053151 | Bacteria | 3682 |
| 150 | Ga0500622_0000003 | 3300053156 | Bacteria | 613483 |
| 151 | Ga0500622_0000008 | 3300053156 | Bacteria | 423636 |
| 152 | 2740033589 | 2739367866 | Bacteria | 4215900 |
| 153 | 2839992394 | 2839989709 | Bacteria | 3773432 |
| 154 | 2852625227 | 2852623160 | Bacteria | 4376875 |
| 155 | 2884635695 | 2884634485 | Bacteria | 3928637 |
| 156 | 2884934241 | 2884933994 | Bacteria | 4535041 |
| 157 | 2902050000 | 2902048731 | Bacteria | 4976191 |
| 158 | 2911139846 | 2911138879 | Bacteria | 5811561 |
| 159 | Ga0157374_10352400 | |||
| 160 | JGI24736J21556_1009696 | |||
| 161 | rootH2_10001535 | |||
| 162 | rootH2_10024039 | |||
| 163 | rootH1_10307517 | |||
| 164 | rootH1_10318169 | |||
| 165 | Ga0065714_10074252 | |||
| 166 | Ga0065704_10174906 | |||
| 167 | Ga0070676_10001528 | |||
| 168 | Ga0070683_100140261 | |||
| 169 | Ga0068868_100045584 | |||
| 170 | Ga0068868_100052890 | |||
| 171 | Ga0070660_100106776 | |||
| 172 | Ga0070673_100020438 | |||
| 173 | Ga0070673_100650442 | |||
| 174 | Ga0070659_100003735 | |||
| 175 | Ga0070659_100131504 | |||
| 176 | Ga0070662_100001673 | |||
| 177 | Ga0070662_100264702 | |||
| 178 | Ga0068867_100008600 | |||
| 179 | Ga0070684_100170910 | |||
| 180 | Ga0070672_100129226 | |||
| 181 | Ga0070665_100000178 | |||
| 182 | Ga0068855_100073326 | |||
| 183 | Ga0068855_100379533 | |||
| 184 | Ga0068857_100754041 | |||
| 185 | Ga0068856_100066917 | |||
| 186 | Ga0068852_100016941 | |||
| 187 | Ga0068866_10024763 | |||
| 188 | Ga0075366_10000118 | |||
| 189 | Ga0075366_10000120 | |||
| 190 | Ga0097621_100002043 | |||
| 191 | Ga0068871_100003586 | |||
| 192 | Ga0075428_100340453 | |||
| 193 | Ga0068865_100000129 | |||
| 194 | Ga0105240_10287323 | |||
| 195 | Ga0105241_10007734 | |||
| 196 | Ga0105241_10009796 | |||
| 197 | Ga0105241_10174283 | |||
| 198 | Ga0105242_10024500 | |||
| 199 | Ga0105237_10006951 | |||
| 200 | Ga0105238_10012421 | |||
| 201 | Ga0105239_10078993 | |||
| 202 | Ga0105239_10098835 | |||
| 203 | Ga0157373_10000090 | |||
| 204 | Ga0157373_10120146 | |||
| 205 | Ga0157371_10013069 | |||
| 206 | Ga0157371_10264673 | |||
| 207 | Ga0157370_10005848 | |||
| 208 | Ga0157369_10046073 | |||
| 209 | Ga0157369_10058798 | |||
| 210 | Ga0157374_10002197 | |||
| 211 | Ga0157374_10096431 | |||
| 212 | Ga0157378_10041670 | |||
| 213 | Ga0157372_10000030 | |||
| 214 | Ga0157372_10018368 | |||
| 215 | Ga0157372_10075529 | |||
| 216 | Ga0157372_10640735 | |||
| 217 | Ga0157380_10000243 | |||
| 218 | Ga0157377_10173800 | |||
| 219 | Ga0209026_1000304 | |||
| 220 | Ga0207642_10106160 | |||
| 221 | Ga0207647_10017463 | |||
| 222 | Ga0207645_10000099 | |||
| 223 | Ga0207654_10010320 | |||
| 224 | Ga0207654_10038783 | |||
| 225 | Ga0207695_10000048 | |||
| 226 | Ga0207695_10007718 | |||
| 227 | Ga0207695_10026207 | |||
| 228 | Ga0207671_10002527 | |||
| 229 | Ga0207671_10024222 | |||
| 230 | Ga0207694_10020085 | |||
| 231 | Ga0207690_10000123 | |||
| 232 | Ga0207690_10150335 | |||
| 233 | Ga0207706_10000138 | |||
| 234 | Ga0207706_10294831 | |||
| 235 | Ga0207704_10000015 | |||
| 236 | Ga0207661_10106883 | |||
| 237 | Ga0207667_10008279 | |||
| 238 | Ga0207651_10007149 | |||
| 239 | Ga0207677_10005540 | |||
| 240 | Ga0207677_10026179 | |||
| 241 | Ga0207639_10038020 | |||
| 242 | Ga0207702_10004978 | |||
| 243 | Ga0207648_10015352 | |||
| 244 | Ga0207698_10016860 | |||
| 245 | Ga0268266_10000098 | |||
| 246 | Ga0307517_10001604 | |||
| 247 | Ga0307515_10054601 | |||
| 248 | Ga0307412_10601206 | |||
| 249 | Ga0307414_10054849 | |||
| 250 | Ga0307411_10009510 | |||
| 251 | Ga0307510_10012029 | |||
| 252 | Ga0395899_0000394 | |||
| 253 | Ga0395899_0106834 | |||
| 254 | Ga0395900_0001213 | |||
| 255 | Ga0395900_0062859 | |||
| 256 | Ga0395898_0133719 | |||
| 257 | Ga0395905_0002112 | |||
| 258 | Ga0395901_0001041 | |||
| 259 | Ga0436361_0995481 | |||
| 260 | Ga0451577_0011587 | |||
| 261 | Ga0451577_0161541 | |||
| 262 | Ga0451577_0588380 | |||
| 263 | Ga0453683_0038298 | |||
| 264 | Ga0453684_0002532 | |||
| 265 | Ga0453684_0002939 | |||
| 266 | Ga0453684_0017686 | |||
| 267 | Ga0453684_0025043 | |||
| 268 | Ga0453684_0268555 | |||
| 269 | Ga0451576_0012810 | |||
| 270 | Ga0451576_0035783 | |||
| 271 | Ga0451576_0036896 | |||
| 272 | Ga0451576_0068772 | |||
| 273 | Ga0451576_0098842 | |||
| 274 | Ga0495638_0000015 | |||
| 275 | Ga0495583_0105315 | |||
| 276 | Ga0495606_0005383 | |||
| 277 | Ga0495631_0004751 | |||
| 278 | Ga0495668_0155859 | |||
| 279 | Ga0495625_0182575 | |||
| 280 | Ga0495649_0017256 | |||
| 281 | Ga0495683_0034963 | |||
| 282 | Ga0495686_0000005 | |||
| 283 | Ga0496115_0124544 | |||
| 284 | Ga0496125_0000310 | |||
| 285 | Ga0496126_0112809 | |||
| 286 | Ga0501031_0008174 | |||
| 287 | Ga0501032_0017859 | |||
| 288 | Ga0501033_0000034 | |||
| 289 | Ga0501034_0000823 | |||
| 290 | Ga0501034_0008038 | |||
| 291 | Ga0501036_0023073 | |||
| 292 | Ga0501037_0003401 | |||
| 293 | Ga0501038_0024914 | |||
| 294 | Ga0501039_0001332 | |||
| 295 | Ga0501043_0000923 | |||
| 296 | Ga0501198_011046 | |||
| 297 | Ga0501223_000391 | |||
| 298 | Ga0501241_000370 | |||
| 299 | Ga0501035_0002384 | |||
| 300 | Ga0501044_0012839 | |||
| 301 | Ga0501045_0000118 | |||
| 302 | nmdc:mga00v17_266324_c1 | |||
| 303 | nmdc:mga0k408_189_c1 | |||
| 304 | nmdc:mga0k408_334635_c1 | |||
| 305 | nmdc:mga0k408_60_c1 | |||
| 306 | Ga0500608_007801 | |||
| 307 | Ga0500604_0004533 | |||
| 308 | Ga0500622_0000003 | |||
| 309 | Ga0500622_0000008 | |||
| 310 | 2740033589 | |||
| 311 | 2839992394 | |||
| 312 | 2852625227 | |||
| 313 | 2884635695 | |||
| 314 | 2884934241 | |||
| 315 | 2902050000 | |||
| 316 | 2911139846 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 4hd1-assembly1.cif.gz_A | crystal structure of squalene synthase hpnc from alicyclobacillus acidocaldarius | 0.8644 | 3 | 243 |
| 3adz-assembly1.cif.gz_A | crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with intermediate pspp | 0.8491 | 4 | 271 |
| 3acx-assembly1.cif.gz_A | crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with bph-673 | 0.8489 | 5 | 271 |
| 4ea1-assembly1.cif.gz_A | co-crystal structure of dehydrosqualene synthase (crtm) from s. aureus with sq-109 | 0.8444 | 5 | 271 |
| 3vje-assembly2.cif.gz_B | crystal structure of the y248a mutant of c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus in complex with zaragozic acid a | 0.8426 | 5 | 271 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_P9WHP3_1_280_1.10.600.10 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.87 | 4 | 268 | 1.10.600.10 |
| 3w7fA00 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.8606 | 5 | 271 | 1.10.600.10 |
| 4hd1A00 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.8484 | 3 | 243 | 1.10.600.10 |
| af_P9WHP3_1_280_1.10.600.10 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.8311 | 4 | 268 | 1.10.600.10 |
| 3w7fA00 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.8288 | 5 | 271 | 1.10.600.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A259HJ97-F1-model_v4 | Phytoene synthase | 1.001 | 1 | 111 |
GO:0008299
|
| AF-A0A1B6CT17-F1-model_v4 | Bifunctional lycopene cyclase/phytoene synthase (EC 2.5.1.32) (EC 5.5.1.19) | 0.9983 | 3 | 264 |
GO:0004311
GO:0016020 GO:0016117 GO:0016767 GO:0016872 GO:0045436 GO:0051996 GO:0065008 |
| AF-A0A2D5QIT1-F1-model_v4 | Phytoene synthase | 0.9973 | 2 | 269 |
GO:0004311
GO:0016117 GO:0051996 |
| AF-A0A3B9AKC1-F1-model_v4 | Phytoene synthase | 0.9971 | 2 | 277 |
GO:0004311
GO:0016117 GO:0051996 |
| AF-A0A7T9HVC1-F1-model_v4 | deleted | 0.9969 | 2 | 277 |
|