F234441

General Info

Members Datasets Scaffolds Average Seq Length
160 113 153 399

Family's Representative Sequence

Representative Sequence 3300009093|Ga0105240_10062279|Ga0105240_100622792
Length 476
Sequence MCRSVPNVSTISEQGAAILVPGVVPNRRFGAGPAQRNLLGVLQTGRATECGRNFALPVQARAHSAKVGPMMDRSIENGGMPTGDRIGMRIRPFMMNFGPQHPSAHGVLRLVLEMDGEIVERADPHIGMLHRGTEKLIEYKTYLQALPYFDRIDYVSPMCEEHPFALAVETLLGITAPPRAQYIRVLFSEVTRILNHMLNVTTFALDLGATTPVLWGFEERERLMEFYERVSGARMHANYFRPGGVHQDLPAGLADDMYAYTEHLPKLVDDLEELLTENRIFKQRTVDIGAVSRKDALAWGFTGPMLRASGVAWDLRKAQPYDVYDQMEFDVPVGLTGDCYARYLVRIEEMRQSARIMRQCLEKMPDGPVKVDDRKIAPPPRAEMKRDMESLIHFFKLYSEGYHVPAGETYTVVETPKGEFGVYLVSDGTNQPYRCHIHPAGFASLEALDFMAKGHLLADTVAIIGSLDLVFGEIDR

Samples

Sample ID Description Type Environment
1 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
2 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
3 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
4 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
5 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
6 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
7 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
8 3300003163 Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
9 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
10 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
11 3300003308 Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_20 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
12 3300003544 Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_33 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
13 3300003574 Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_26 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
14 3300003577 Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_32 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
15 3300003579 Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_45 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
16 3300003693 Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_49 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
17 3300003735 Avena fatua rhizosphere microbial communities - H4_Bulk_Litter_23 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
18 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
22 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
23 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
24 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
25 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
29 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
30 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
31 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
32 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
33 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
34 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
42 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
43 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
44 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
45 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
46 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
47 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
48 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
49 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
50 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
51 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
52 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
53 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
54 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
55 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
56 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
57 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
58 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
59 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
60 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
61 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
62 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
63 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
64 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
65 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
66 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
67 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
68 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
69 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
70 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
71 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
72 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
73 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
74 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
79 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
86 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
87 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
88 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
89 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
90 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
91 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
92 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
93 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
94 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
95 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
96 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
97 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
98 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
99 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
100 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
101 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
102 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
103 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
104 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
105 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
106 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
107 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
108 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
109 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
110 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
111 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
112 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
113 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 90
Metatranscriptomes 5.62
Isolates 4.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.75
Nodule 0
Rhizoplane 1.88
Rhizosphere 83.12
Stem 0
Stem Tuber 0
Unclassified 6.25

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1005974 3300002987 Bacteria 3729
2 Ga0006759J45824_1034139 3300003163 Bacteria 2715
3 JGI25406J46586_10000156 3300003203 Bacteria 30235
4 JGI25153J46596_10000012 3300003215 Bacteria 308056
5 Ga0006777J48905_1028079 3300003308 Bacteria 2485
6 Ga0007417J51691_1012896 3300003544 Bacteria 3379
7 Ga0007410J51695_1025051 3300003574 Bacteria 2375
8 Ga0007416J51690_1016854 3300003577 Bacteria 3260
9 Ga0007429J51699_1044285 3300003579 Bacteria 3002
10 Ga0032354_1011279 3300003693 Bacteria 2316
11 Ga0006780_1018835 3300003735 Bacteria 2187
12 Ga0070680_100015058 3300005336 Bacteria 6054
13 Ga0070681_10001773 3300005458 Bacteria 19357
14 Ga0070679_100003133 3300005530 Bacteria 15118
15 Ga0070679_100115633 3300005530 Bacteria 2668
16 Ga0068862_100043721 3300005844 Bacteria 3819
17 Ga0081538_10022046 3300005981 Bacteria 4626
18 Ga0081539_10000076 3300005985 Bacteria 229037
19 Ga0081539_10059270 3300005985 Bacteria 2108
20 Ga0075430_100052806 3300006846 Bacteria 3423
21 Ga0075430_100110168 3300006846 Bacteria 2296
22 Ga0068865_100074998 3300006881 Bacteria 2411
23 Ga0105240_10062279 3300009093 Bacteria 4645
24 Ga0111539_10000445 3300009094 Bacteria 52233
25 Ga0111539_10016346 3300009094 Bacteria 9200
26 Ga0105238_10012488 3300009551 Bacteria 8567
27 Ga0105239_10035918 3300010375 Bacteria 5441
28 Ga0163163_10247563 3300014325 Bacteria 1833
29 Ga0213872_10001168 3300021361 Bacteria 17837
30 Ga0213872_10003580 3300021361 Bacteria 8550
31 Ga0213872_10019936 3300021361 Bacteria 3088
32 Ga0213872_10055568 3300021361 Bacteria 1794
33 Ga0213872_10055988 3300021361 Bacteria 1787
34 Ga0213875_10000766 3300021388 Bacteria 24181
35 Ga0213875_10058670 3300021388 Bacteria 1801
36 Ga0209758_1000059 3300025297 Bacteria 328458
37 Ga0209050_1007717 3300025298 Bacteria 5943
38 Ga0209257_1002470 3300025304 Bacteria 18283
39 Ga0207707_10089521 3300025912 Bacteria 2690
40 Ga0207707_10184821 3300025912 Bacteria 1819
41 Ga0207660_10019957 3300025917 Bacteria 4491
42 Ga0207652_10016935 3300025921 Bacteria 5960
43 Ga0207694_10006504 3300025924 Bacteria 8891
44 Ga0207694_10055218 3300025924 Bacteria 3083
45 Ga0207664_10037168 3300025929 Bacteria 3766
46 Ga0207428_10000242 3300027907 Bacteria 74839
47 Ga0265324_10001784 3300029957 Bacteria 11754
48 Ga0265328_10016617 3300031239 Bacteria 2859
49 Ga0265331_10000066 3300031250 Bacteria 163571
50 Ga0265327_10000428 3300031251 Bacteria 76098
51 Ga0265327_10060346 3300031251 Bacteria 1939
52 Ga0307513_10110818 3300031456 Bacteria 2739
53 Ga0307408_100189051 3300031548 Bacteria 1658
54 Ga0316575_10002410 3300031665 Bacteria 6264
55 Ga0316575_10018864 3300031665 Bacteria 2633
56 Ga0316579_10010430 3300031691 Bacteria 3929
57 Ga0307405_10101825 3300031731 Bacteria 1928
58 Ga0307413_10009990 3300031824 Bacteria 4575
59 Ga0316583_10023650 3300032133 Bacteria 2193
60 Ga0373953_0046698 3300035117 Bacteria 1739
61 Ga0316574_0000854 3300035398 Bacteria 13382
62 Ga0373931_0031348 3300035691 Bacteria 2744
63 Ga0373933_0008853 3300035724 Bacteria 5488
64 Ga0373937_0031855 3300036401 Bacteria 4779
65 Ga0373937_0070247 3300036401 Bacteria 3230
66 Ga0373937_0090816 3300036401 Bacteria 2829
67 Ga0316582_0045266 3300036647 Bacteria 2770
68 Ga0395899_0014031 3300037312 Bacteria 6117
69 Ga0395899_0037237 3300037312 Bacteria 3648
70 Ga0395900_0073021 3300037418 Bacteria 3527
71 Ga0436364_1433581 3300037853 Bacteria 6421
72 Ga0436364_1562894 3300037853 Bacteria 22467
73 Ga0395901_0282513 3300038443 Bacteria 1724
74 Ga0436360_0438736 3300039438 Bacteria 2816
75 Ga0436360_1214689 3300039438 Bacteria 1252
76 Ga0436360_1316795 3300039438 Bacteria 1260
77 Ga0436361_0039236 3300039447 Bacteria 6399
78 Ga0436361_0253813 3300039447 Bacteria 3598
79 Ga0436361_0795199 3300039447 Bacteria 71391
80 Ga0453683_0007453 3300044673 Bacteria 7420
81 Ga0466965_0042656 3300044683 Bacteria 2239
82 Ga0453684_0000006 3300044712 Bacteria 1364191
83 Ga0453684_0000410 3300044712 Bacteria 175627
84 Ga0453684_0010839 3300044712 Bacteria 15449
85 Ga0453684_0036805 3300044712 Bacteria 6736
86 Ga0453684_0051987 3300044712 Bacteria 5363
87 Ga0451576_0001548 3300045051 Bacteria 38737
88 Ga0451576_0002190 3300045051 Bacteria 30140
89 Ga0451576_0034274 3300045051 Bacteria 5393
90 Ga0451576_0146904 3300045051 Bacteria 2458
91 Ga0495652_0205661 3300046529 Bacteria 1491
92 Ga0495587_0051152 3300046536 Bacteria 2443
93 Ga0496104_0331036 3300048907 Bacteria 1436
94 Ga0496108_0041827 3300048911 Bacteria 3827
95 Ga0496109_0253406 3300048912 Bacteria 1658
96 Ga0501032_0000951 3300049569 Bacteria 23376
97 Ga0501033_0007292 3300049570 Bacteria 8626
98 Ga0501034_0037364 3300049571 Bacteria 4916
99 Ga0501034_0093404 3300049571 Bacteria 3005
100 Ga0501034_0187965 3300049571 Bacteria 2028
101 Ga0501036_0002920 3300049572 Bacteria 13573
102 Ga0501038_0000730 3300049574 Bacteria 29345
103 Ga0501039_0109168 3300049575 Bacteria 2163
104 Ga0501041_0034487 3300049577 Bacteria 3064
105 Ga0501043_0002840 3300049579 Bacteria 14469
106 Ga0501043_0155594 3300049579 Bacteria 1788
107 Ga0501046_0058354 3300049580 Bacteria 3026
108 Ga0501047_0005283 3300049581 Bacteria 12137
109 Ga0501047_0193713 3300049581 Bacteria 1895
110 Ga0501048_0010281 3300049582 Bacteria 6996
111 Ga0501048_0216597 3300049582 Bacteria 1358
112 Ga0501067_0007181 3300049583 Bacteria 6191
113 Ga0501068_0093322 3300049584 Bacteria 1859
114 Ga0501069_0000066 3300049585 Bacteria 55164
115 Ga0501070_0003216 3300049586 Bacteria 14207
116 Ga0501070_0141421 3300049586 Bacteria 1987
117 Ga0501071_0138601 3300049587 Bacteria 1811
118 Ga0501073_0000746 3300049589 Bacteria 23011
119 Ga0501073_0005526 3300049589 Bacteria 9465
120 Ga0501074_0093036 3300049590 Bacteria 2159
121 Ga0501076_0013404 3300049592 Bacteria 6147
122 Ga0501079_0239168 3300049741 Bacteria 1419
123 Ga0501080_0001309 3300049742 Bacteria 20742
124 Ga0501080_0119565 3300049742 Bacteria 2442
125 Ga0501081_0148613 3300049743 Bacteria 1682
126 Ga0501083_0006526 3300049744 Bacteria 8272
127 Ga0501083_0008097 3300049744 Bacteria 7433
128 Ga0501044_0006024 3300049823 Bacteria 13394
129 Ga0501044_0006624 3300049823 Bacteria 12776
130 Ga0501044_0012740 3300049823 Bacteria 9106
131 Ga0501044_0095530 3300049823 Bacteria 2995
132 Ga0501044_0130005 3300049823 Bacteria 2513
133 nmdc:mga05p37_96945_c1 3300050507 Bacteria 3633
134 nmdc:mga08y16_15117_c1 3300050511 Bacteria 8113
135 nmdc:mga08y16_35_c1 3300050511 Bacteria 157578
136 Ga0495619_0048544 3300053085 Bacteria 2797
137 Ga0495619_0132972 3300053085 Bacteria 1710
138 Ga0500644_0066226 3300053088 Bacteria 1288
139 Ga0500641_0002272 3300053096 Bacteria 6810
140 Ga0500562_000021 3300053108 Bacteria 112425
141 Ga0500562_007563 3300053108 Bacteria 2741
142 Ga0500618_004527 3300053125 Bacteria 4405
143 Ga0500642_0075460 3300053130 Bacteria 1540
144 Ga0500559_0044698 3300053136 Bacteria 1938
145 Ga0500616_0001203 3300053153 Bacteria 26255
146 Ga0500636_0042005 3300053177 Bacteria 2704
147 Ga0501084_0096648 3300054114 Bacteria 2480
148 Ga0590071_007221 3300059421 Bacteria 2630
149 Ga0587111_0006980 3300060346 Bacteria 1815
150 Ga0501082_0006052 3300060353 Bacteria 10500
151 Ga0501082_0006880 3300060353 Bacteria 9836
152 Ga0501082_0049211 3300060353 Bacteria 3634
153 Ga0501082_0079342 3300060353 Bacteria 2832

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049582 Ga0501048_0216597 Ga0501048_0216597_305_1345 319
2 3300049581 Ga0501047_0193713 Ga0501047_0193713_28_1125 365
3 3300036401 Ga0373937_0031855 Ga0373937_0031855_3615_4763 382
4 iso_pu_bacteria 2883354860 2883357167 388
5 3300006846 Ga0075430_100110168 Ga0075430_1001101682 389
6 3300009094 Ga0111539_10016346 Ga0111539_100163465 389
7 3300031665 Ga0316575_10002410 Ga0316575_100024103 389
8 3300031665 Ga0316575_10018864 Ga0316575_100188643 389
9 3300031691 Ga0316579_10010430 Ga0316579_100104306 389
10 3300032133 Ga0316583_10023650 Ga0316583_100236503 389
11 3300035398 Ga0316574_0000854 Ga0316574_0000854_7819_9072 389
12 3300036647 Ga0316582_0045266 Ga0316582_0045266_1027_2280 389
13 3300048911 Ga0496108_0041827 Ga0496108_0041827_1742_2995 389
14 3300048912 Ga0496109_0253406 Ga0496109_0253406_218_1471 389
15 3300050511 nmdc:mga08y16_15117_c1 nmdc:mga08y16_15117_c1_2610_3863 389
16 iso_pu_bacteria 2522572158 2523105254 389
17 iso_pu_bacteria 2842775625 2842776896 389
18 iso_pu_bacteria 2844533157 2844536474 389
19 iso_pu_bacteria 2894772417 2894772817 389
20 3300044712 Ga0453684_0010839 Ga0453684_0010839_14065_15258 390
21 3300003163 Ga0006759J45824_1034139 Ga0006759J45824_10341392 392
22 3300003203 JGI25406J46586_10000156 JGI25406J46586_1000015612 392
23 3300003215 JGI25153J46596_10000012 JGI25153J46596_10000012198 392
24 3300003308 Ga0006777J48905_1028079 Ga0006777J48905_10280792 392
25 3300003544 Ga0007417J51691_1012896 Ga0007417J51691_10128962 392
26 3300003574 Ga0007410J51695_1025051 Ga0007410J51695_10250512 392
27 3300003577 Ga0007416J51690_1016854 Ga0007416J51690_10168542 392
28 3300003579 Ga0007429J51699_1044285 Ga0007429J51699_10442852 392
29 3300003693 Ga0032354_1011279 Ga0032354_10112792 392
30 3300003735 Ga0006780_1018835 Ga0006780_10188351 392
31 3300005336 Ga0070680_100015058 Ga0070680_1000150587 392
32 3300005458 Ga0070681_10001773 Ga0070681_1000177313 392
33 3300005530 Ga0070679_100003133 Ga0070679_10000313311 392
34 3300005530 Ga0070679_100115633 Ga0070679_1001156332 392
35 3300005844 Ga0068862_100043721 Ga0068862_1000437213 392
36 3300005981 Ga0081538_10022046 Ga0081538_100220466 392
37 3300005985 Ga0081539_10000076 Ga0081539_10000076158 392
38 3300005985 Ga0081539_10059270 Ga0081539_100592702 392
39 3300006846 Ga0075430_100052806 Ga0075430_1000528062 392
40 3300006881 Ga0068865_100074998 Ga0068865_1000749983 392
41 3300009093 Ga0105240_10062279 Ga0105240_100622792 392
42 3300009094 Ga0111539_10000445 Ga0111539_1000044546 392
43 3300009551 Ga0105238_10012488 Ga0105238_100124888 392
44 3300010375 Ga0105239_10035918 Ga0105239_100359188 392
45 3300014325 Ga0163163_10247563 Ga0163163_102475632 392
46 3300021361 Ga0213872_10001168 Ga0213872_100011689 392
47 3300021361 Ga0213872_10003580 Ga0213872_100035809 392
48 3300021361 Ga0213872_10019936 Ga0213872_100199362 392
49 3300021361 Ga0213872_10055568 Ga0213872_100555682 392
50 3300021361 Ga0213872_10055988 Ga0213872_100559882 392
51 3300021388 Ga0213875_10000766 Ga0213875_100007667 392
52 3300021388 Ga0213875_10058670 Ga0213875_100586702 392
53 3300025297 Ga0209758_1000059 Ga0209758_100005989 392
54 3300025298 Ga0209050_1007717 Ga0209050_10077174 392
55 3300025304 Ga0209257_1002470 Ga0209257_100247016 392
56 3300025912 Ga0207707_10089521 Ga0207707_100895212 392
57 3300025912 Ga0207707_10184821 Ga0207707_101848211 392
58 3300025917 Ga0207660_10019957 Ga0207660_100199573 392
59 3300025921 Ga0207652_10016935 Ga0207652_100169353 392
60 3300025924 Ga0207694_10006504 Ga0207694_100065049 392
61 3300025924 Ga0207694_10055218 Ga0207694_100552182 392
62 3300025929 Ga0207664_10037168 Ga0207664_100371682 392
63 3300027907 Ga0207428_10000242 Ga0207428_1000024225 392
64 3300029957 Ga0265324_10001784 Ga0265324_100017844 392
65 3300031239 Ga0265328_10016617 Ga0265328_100166172 392
66 3300031250 Ga0265331_10000066 Ga0265331_1000006669 392
67 3300031251 Ga0265327_10000428 Ga0265327_1000042813 392
68 3300031251 Ga0265327_10060346 Ga0265327_100603463 392
69 3300031456 Ga0307513_10110818 Ga0307513_101108182 392
70 3300031548 Ga0307408_100189051 Ga0307408_1001890512 392
71 3300031731 Ga0307405_10101825 Ga0307405_101018251 392
72 3300031824 Ga0307413_10009990 Ga0307413_100099906 392
73 3300035117 Ga0373953_0046698 Ga0373953_0046698_92_1309 392
74 3300035691 Ga0373931_0031348 Ga0373931_0031348_202_1380 392
75 3300035724 Ga0373933_0008853 Ga0373933_0008853_3694_4908 392
76 3300036401 Ga0373937_0070247 Ga0373937_0070247_183_1415 392
77 3300036401 Ga0373937_0090816 Ga0373937_0090816_910_2088 392
78 3300037312 Ga0395899_0014031 Ga0395899_0014031_459_1769 392
79 3300037312 Ga0395899_0037237 Ga0395899_0037237_1778_3130 392
80 3300037418 Ga0395900_0073021 Ga0395900_0073021_1572_2924 392
81 3300037853 Ga0436364_1433581 Ga0436364_1433581_1782_2996 392
82 3300037853 Ga0436364_1562894 Ga0436364_1562894_13048_14292 392
83 3300038443 Ga0395901_0282513 Ga0395901_0282513_270_1622 392
84 3300039438 Ga0436360_0438736 Ga0436360_0438736_951_2171 392
85 3300039438 Ga0436360_1214689 Ga0436360_1214689_45_1223 392
86 3300039438 Ga0436360_1316795 Ga0436360_1316795_34_1212 392
87 3300039447 Ga0436361_0039236 Ga0436361_0039236_2540_3757 392
88 3300039447 Ga0436361_0253813 Ga0436361_0253813_545_1723 392
89 3300039447 Ga0436361_0795199 Ga0436361_0795199_35049_36227 392
90 3300044673 Ga0453683_0007453 Ga0453683_0007453_2844_4022 392
91 3300044683 Ga0466965_0042656 Ga0466965_0042656_542_1819 392
92 3300044712 Ga0453684_0000006 Ga0453684_0000006_79781_80959 392
93 3300044712 Ga0453684_0000410 Ga0453684_0000410_53162_54340 392
94 3300044712 Ga0453684_0036805 Ga0453684_0036805_4416_5594 392
95 3300044712 Ga0453684_0051987 Ga0453684_0051987_3318_4496 392
96 3300045051 Ga0451576_0001548 Ga0451576_0001548_33819_34997 392
97 3300045051 Ga0451576_0002190 Ga0451576_0002190_15289_16506 392
98 3300045051 Ga0451576_0034274 Ga0451576_0034274_550_1728 392
99 3300045051 Ga0451576_0146904 Ga0451576_0146904_683_1861 392
100 3300046529 Ga0495652_0205661 Ga0495652_0205661_130_1308 392
101 3300046536 Ga0495587_0051152 Ga0495587_0051152_213_1430 392
102 3300048907 Ga0496104_0331036 Ga0496104_0331036_45_1253 392
103 3300049569 Ga0501032_0000951 Ga0501032_0000951_4796_5974 392
104 3300049570 Ga0501033_0007292 Ga0501033_0007292_2778_3956 392
105 3300049571 Ga0501034_0037364 Ga0501034_0037364_123_1301 392
106 3300049571 Ga0501034_0093404 Ga0501034_0093404_851_2029 392
107 3300049571 Ga0501034_0187965 Ga0501034_0187965_283_1461 392
108 3300049572 Ga0501036_0002920 Ga0501036_0002920_8281_9459 392
109 3300049574 Ga0501038_0000730 Ga0501038_0000730_4464_5642 392
110 3300049575 Ga0501039_0109168 Ga0501039_0109168_837_2015 392
111 3300049577 Ga0501041_0034487 Ga0501041_0034487_156_1334 392
112 3300049579 Ga0501043_0002840 Ga0501043_0002840_5500_6678 392
113 3300049579 Ga0501043_0155594 Ga0501043_0155594_484_1662 392
114 3300049580 Ga0501046_0058354 Ga0501046_0058354_110_1288 392
115 3300049581 Ga0501047_0005283 Ga0501047_0005283_3518_4696 392
116 3300049582 Ga0501048_0010281 Ga0501048_0010281_2307_3485 392
117 3300049583 Ga0501067_0007181 Ga0501067_0007181_724_1902 392
118 3300049584 Ga0501068_0093322 Ga0501068_0093322_403_1581 392
119 3300049585 Ga0501069_0000066 Ga0501069_0000066_20379_21557 392
120 3300049586 Ga0501070_0003216 Ga0501070_0003216_8479_9657 392
121 3300049586 Ga0501070_0141421 Ga0501070_0141421_31_1209 392
122 3300049587 Ga0501071_0138601 Ga0501071_0138601_549_1727 392
123 3300049589 Ga0501073_0000746 Ga0501073_0000746_9415_10593 392
124 3300049589 Ga0501073_0005526 Ga0501073_0005526_3344_4522 392
125 3300049590 Ga0501074_0093036 Ga0501074_0093036_360_1538 392
126 3300049592 Ga0501076_0013404 Ga0501076_0013404_1942_3120 392
127 3300049741 Ga0501079_0239168 Ga0501079_0239168_115_1293 392
128 3300049742 Ga0501080_0001309 Ga0501080_0001309_15988_17166 392
129 3300049742 Ga0501080_0119565 Ga0501080_0119565_314_1492 392
130 3300049743 Ga0501081_0148613 Ga0501081_0148613_136_1314 392
131 3300049744 Ga0501083_0006526 Ga0501083_0006526_3518_4696 392
132 3300049744 Ga0501083_0008097 Ga0501083_0008097_6189_7367 392
133 3300049823 Ga0501044_0006024 Ga0501044_0006024_3909_5087 392
134 3300049823 Ga0501044_0006624 Ga0501044_0006624_1177_2355 392
135 3300049823 Ga0501044_0012740 Ga0501044_0012740_1853_3031 392
136 3300049823 Ga0501044_0095530 Ga0501044_0095530_1570_2802 392
137 3300049823 Ga0501044_0130005 Ga0501044_0130005_243_1421 392
138 3300050507 nmdc:mga05p37_96945_c1 nmdc:mga05p37_96945_c1_1947_3125 392
139 3300050511 nmdc:mga08y16_35_c1 nmdc:mga08y16_35_c1_43927_45105 392
140 3300053085 Ga0495619_0048544 Ga0495619_0048544_922_2139 392
141 3300053085 Ga0495619_0132972 Ga0495619_0132972_355_1569 392
142 3300053088 Ga0500644_0066226 Ga0500644_0066226_85_1263 392
143 3300053096 Ga0500641_0002272 Ga0500641_0002272_1313_2491 392
144 3300053108 Ga0500562_000021 Ga0500562_000021_59298_60494 392
145 3300053108 Ga0500562_007563 Ga0500562_007563_1028_2257 392
146 3300053125 Ga0500618_004527 Ga0500618_004527_752_1951 392
147 3300053130 Ga0500642_0075460 Ga0500642_0075460_30_1208 392
148 3300053136 Ga0500559_0044698 Ga0500559_0044698_126_1304 392
149 3300053153 Ga0500616_0001203 Ga0500616_0001203_22821_23999 392
150 3300053177 Ga0500636_0042005 Ga0500636_0042005_1305_2504 392
151 3300054114 Ga0501084_0096648 Ga0501084_0096648_35_1213 392
152 3300059421 Ga0590071_007221 Ga0590071_007221_344_1522 392
153 3300060346 Ga0587111_0006980 Ga0587111_0006980_457_1635 392
154 3300060353 Ga0501082_0006052 Ga0501082_0006052_8503_9681 392
155 3300060353 Ga0501082_0006880 Ga0501082_0006880_6618_7838 392
156 3300060353 Ga0501082_0049211 Ga0501082_0049211_113_1291 392
157 3300060353 Ga0501082_0079342 Ga0501082_0079342_826_2004 392
158 iso_pu_bacteria 2929199973 2929203550 392
159 iso_pu_bacteria 8055909800 8055911260 392
160 3300002987 JGI25159J45721_1005974 JGI25159J45721_10059742 393

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00346

Complex1_49kDa

Respiratory-chain NADH dehydrogenase, 49 Kd subunit

206

476

1

Structural Annotation

Top 5 Hits

ID Description Score Start End
7qsn-assembly1.cif.gz_D bovine complex i in lipid nanodisc, deactive-apo 0.9748 32 393
7vwj-assembly1.cif.gz_Q matrix arm of deactive state ci from rotenone-nadh dataset 0.9709 9 393
6zku-assembly1.cif.gz_4 deactive complex i, open3 0.9699 7 393
6zkt-assembly1.cif.gz_4 deactive complex i, open2 0.9698 7 393
7r45-assembly1.cif.gz_D bovine complex i in the presence of im1761092, deactive class i (composite map) 0.9696 7 393
ID Description Score Start End Superfamily
af_Q23883_16_406_1.10.645.10 Mainly Alpha;Orthogonal Bundle;Cytochrome-c3 Hydrogenase; chain B;Cytochrome-c3 Hydrogenase, chain B 0.9519 9 393 1.10.645.10
af_P33599_211_596_1.10.645.10 Mainly Alpha;Orthogonal Bundle;Cytochrome-c3 Hydrogenase; chain B;Cytochrome-c3 Hydrogenase, chain B 0.947 9 393 1.10.645.10
af_P33599_211_596_1.10.645.10 Mainly Alpha;Orthogonal Bundle;Cytochrome-c3 Hydrogenase; chain B;Cytochrome-c3 Hydrogenase, chain B 0.9423 9 393 1.10.645.10
af_P9WJH5_38_440_1.10.645.10 Mainly Alpha;Orthogonal Bundle;Cytochrome-c3 Hydrogenase; chain B;Cytochrome-c3 Hydrogenase, chain B 0.9419 9 393 1.10.645.10
af_Q23883_16_406_1.10.645.10 Mainly Alpha;Orthogonal Bundle;Cytochrome-c3 Hydrogenase; chain B;Cytochrome-c3 Hydrogenase, chain B 0.9352 9 393 1.10.645.10
ID Description Score Start End GO Terms
AF-A0A6J0JBT4-F1-model_v4 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial (Complex I-49kD) (NADH-ubiquinone oxidoreductase 49 kDa subunit) 0.9911 162 257 GO:0005739
GO:0006120
GO:0016651
GO:0048038
GO:0051287
GO:0051539
AF-A0A533XNX7-F1-model_v4 NADH-quinone oxidoreductase subunit D (EC 1.6.5.11) 0.9882 142 271 GO:0016651
GO:0048038
GO:0051287
AF-A0A6V7J6V7-F1-model_v4 Complex I-49kD (NADH-ubiquinone oxidoreductase 49 kDa subunit) 0.9848 103 256 GO:0005739
GO:0006120
GO:0016651
GO:0048038
GO:0051287
AF-D7RN15-F1-model_v4 NADH dehydrogenase subunit 7 0.983 78 216 GO:0005739
GO:0006120
GO:0016651
GO:0048038
GO:0051287
AF-A0A5Q0UUT2-F1-model_v4 NADH-plastoquinone oxidoreductase subunit 7 0.9829 85 289 GO:0009535
GO:0016651
GO:0048038
GO:0051287

Feature Viewer

pLDDT pTM Quality
87.61 0.89 High
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Predicted Structure (AlphaFold2)

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