F235692

General Info

Members Datasets Scaffolds Average Seq Length
160 135 320 557

Family's Representative Sequence

Representative Sequence 3300053083|Ga0495655_0002381|Ga0495655_0002381_232_2010
Length 592
Sequence MRNAASRKELLLGERPALPRKPGASRVTAGPWKAGRYKRLPYACGVTPEELSAAIAACLQAAVDAGDFAVEMPDEVRVERPKNREHGDWATNIAMQLGKKAGMNPRQFAEILSARLEKIDGVARVDIAGPGFLNITVDAAAAGVLARNIVEAGTGYGTSDDLAGQRINLEFVSANPTGPIHLGGTRWAALGDALARILVAQGADVAREYYFNDHGSQIDRFARSLLAKAKGEAAPEDGYGGDYIADIANAVLEQNPDALSAADPQEEFRSRGVELMFTAIKKSLHEFGVDFDVYFHENSLFEDGAVEKLLEELKSSGSLYFNDGAWWLKSTDFGDDKDRVVIKSDGNAAYIAGDIAYFKNKRDRGFDLCIYMLGADHHGYVARLKAAAAAMGDSADRVEVLIGQMVNLVKDGKPMRMSKRAGTVVTMEDLVDAVGVDAARYALTRSHADSNIDXXXXLLVKHSNDNPVYYVQYAHARTCAVARNAAASGVERSAFDASLLDHATENELLAVLGAYPSVVAMAAKFREPHRVARHLEVIAGAYHRWYDACRVTPIGDGEVTDTHRTRLWLNTAVTQVLANGLDLLGVSAPERM

Samples

Sample ID Description Type Environment
1 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
14 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
15 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
16 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
17 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
31 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
32 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
33 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
34 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
35 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
36 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
43 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
49 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
50 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
51 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
52 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
53 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
74 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
75 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
76 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
77 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
78 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
79 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
80 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
81 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
82 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
83 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
84 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
85 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
86 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
87 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
88 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
89 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
90 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
91 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
92 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
93 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
94 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
95 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
96 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
97 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
98 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
99 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
100 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
101 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
102 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
103 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
104 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
105 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
106 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
108 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
109 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
110 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
111 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
112 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
113 2537561592 Arthrobacter crystallopoietes BAB-32 Isolate Rhizosphere
114 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
115 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
116 2728369276 Kineococcus rhizosphaerae DSM 19711 Isolate Rhizosphere
117 2739367653 Kocuria sp. OV113 Isolate Unclassified
118 2744054611 Aldersonia kunmingensis DSM 45001 Isolate Rhizosphere
119 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
120 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
121 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
122 2816332305 Kocuria rhizophila FDAARGOS_302 Isolate Rhizosphere
123 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified
124 2857727296 Kocuria sp. R-72562 Isolate Unclassified
125 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
126 2893684298 Kocuria palustris DSM 11925 Isolate Rhizosphere
127 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber
128 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
129 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
130 2920879853 Kocuria salina CV6 Isolate Unclassified
131 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
132 2956939328 Lolliginicoccus suaedae LNNU 331112 Isolate Rhizosphere
133 3001119090 Lolliginicoccus lacisalsi G463 Isolate Rhizosphere
134 8004021418 Arthrobacter sp. SDTb3-6 Isolate Rhizosphere
135 8004025490 Arthrobacter wenxiniae AETb3-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 85.62
Metatranscriptomes 0
Isolates 14.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.25
Nodule 0
Rhizoplane 3.75
Rhizosphere 85.62
Stem 0
Stem Tuber 0.62
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495655_0002381 3300053083 Bacteria 2981
2 JGI24737J22298_10011032 3300001990 Bacteria 2967
3 JGI24735J21928_10014166 3300002067 Bacteria 2499
4 Ga0070683_100136271 3300005329 Bacteria 2325
5 Ga0068869_100012329 3300005334 Bacteria 5647
6 Ga0070666_10012644 3300005335 Bacteria 5332
7 Ga0068868_100032523 3300005338 Bacteria 4013
8 Ga0070692_10018045 3300005345 Bacteria 3386
9 Ga0070668_100009952 3300005347 Bacteria 7043
10 Ga0070671_100106678 3300005355 Bacteria 2352
11 Ga0070659_100004135 3300005366 Bacteria 10347
12 Ga0070667_100058420 3300005367 Bacteria 3261
13 Ga0070703_10004840 3300005406 Bacteria 3764
14 Ga0070710_10000382 3300005437 Bacteria 20701
15 Ga0070710_10006950 3300005437 Bacteria 5458
16 Ga0070705_100008477 3300005440 Bacteria 5094
17 Ga0070705_100029850 3300005440 Bacteria 3004
18 Ga0070694_100015193 3300005444 Bacteria 4828
19 Ga0070663_100025374 3300005455 Bacteria 4000
20 Ga0070678_100027521 3300005456 Bacteria 3861
21 Ga0068853_100018813 3300005539 Bacteria 5719
22 Ga0070686_100027361 3300005544 Bacteria 3451
23 Ga0070665_100085131 3300005548 Bacteria 3167
24 Ga0070704_100031875 3300005549 Bacteria 3549
25 Ga0068855_100004754 3300005563 Bacteria 16579
26 Ga0068855_100008979 3300005563 Bacteria 12079
27 Ga0068855_100072387 3300005563 Bacteria 4006
28 Ga0070664_100031247 3300005564 Bacteria 4448
29 Ga0068856_100017657 3300005614 Bacteria 6917
30 Ga0070702_100003550 3300005615 Bacteria 6993
31 Ga0070702_100011700 3300005615 Bacteria 4372
32 Ga0068859_100005592 3300005617 Bacteria 12805
33 Ga0068859_100042144 3300005617 Bacteria 4585
34 Ga0068864_100015667 3300005618 Bacteria 6306
35 Ga0068860_100098484 3300005843 Bacteria 2788
36 Ga0081455_10006614 3300005937 Bacteria 12403
37 Ga0081540_1007527 3300005983 Bacteria 7752
38 Ga0081539_10006771 3300005985 Bacteria 10757
39 Ga0081539_10013128 3300005985 Bacteria 6277
40 Ga0070717_10044912 3300006028 Bacteria 3610
41 Ga0070716_100023595 3300006173 Bacteria 3263
42 Ga0075433_10020945 3300006852 Bacteria 5476
43 Ga0097620_100005592 3300006931 Bacteria 12805
44 Ga0097620_100042144 3300006931 Bacteria 4585
45 Ga0105240_10168491 3300009093 Bacteria 2596
46 Ga0105243_10015254 3300009148 Bacteria 5814
47 Ga0105243_10017710 3300009148 Bacteria 5388
48 Ga0105243_10039712 3300009148 Bacteria 3671
49 Ga0105242_10007129 3300009176 Bacteria 8627
50 Ga0105242_10030439 3300009176 Bacteria 4309
51 Ga0105248_10053341 3300009177 Bacteria 4537
52 Ga0105238_10043762 3300009551 Bacteria 4529
53 Ga0105246_10039310 3300011119 Bacteria 3186
54 Ga0157370_10106851 3300013104 Bacteria 2619
55 Ga0157374_10038716 3300013296 Bacteria 4384
56 Ga0157378_10007252 3300013297 Bacteria 9678
57 Ga0157378_10039323 3300013297 Bacteria 4195
58 Ga0163162_10111923 3300013306 Bacteria 2828
59 Ga0157372_10086589 3300013307 Bacteria 3554
60 Ga0157380_10022562 3300014326 Bacteria 4743
61 Ga0157380_10038548 3300014326 Bacteria 3711
62 Ga0157377_10010433 3300014745 Bacteria 4596
63 Ga0157379_10034535 3300014968 Bacteria 4509
64 Ga0157376_10019764 3300014969 Bacteria 5198
65 Ga0163161_10020661 3300017792 Bacteria 4624
66 Ga0207692_10000201 3300025898 Bacteria 19959
67 Ga0207710_10006662 3300025900 Bacteria 4923
68 Ga0207688_10002570 3300025901 Bacteria 9820
69 Ga0207647_10017964 3300025904 Bacteria 4795
70 Ga0207693_10002695 3300025915 Bacteria 15393
71 Ga0207657_10018845 3300025919 Bacteria 6571
72 Ga0207694_10010728 3300025924 Bacteria 6920
73 Ga0207686_10059671 3300025934 Bacteria 2411
74 Ga0207709_10018626 3300025935 Bacteria 3891
75 Ga0207665_10001282 3300025939 Bacteria 16978
76 Ga0207689_10009069 3300025942 Bacteria 8614
77 Ga0207667_10008641 3300025949 Bacteria 12078
78 Ga0207667_10080647 3300025949 Bacteria 3371
79 Ga0207712_10012431 3300025961 Bacteria 5439
80 Ga0207668_10101163 3300025972 Bacteria 2142
81 Ga0207640_10107506 3300025981 Bacteria 1970
82 Ga0207658_10041270 3300025986 Bacteria 3340
83 Ga0207678_10007397 3300026067 Bacteria 9723
84 Ga0207683_10013334 3300026121 Bacteria 7008
85 Ga0207698_10000453 3300026142 Bacteria 23729
86 Ga0268264_10137035 3300028381 Bacteria 2177
87 Ga0316181_1273576 3300030744 Bacteria 3465
88 Ga0316182_1192363 3300030745 Bacteria 7152
89 Ga0265327_10000019 3300031251 Bacteria 427653
90 Ga0307408_100046357 3300031548 Bacteria 3109
91 Ga0316575_10000006 3300031665 Bacteria 85686
92 Ga0316575_10026214 3300031665 Bacteria 2264
93 Ga0316579_10000018 3300031691 Bacteria 39055
94 Ga0316578_10038221 3300031728 Bacteria 2767
95 Ga0307518_10001915 3300031838 Bacteria 15384
96 Ga0307406_10074664 3300031901 Bacteria 2233
97 Ga0307409_100025863 3300031995 Bacteria 4126
98 Ga0307409_100058673 3300031995 Bacteria 2990
99 Ga0307416_100069821 3300032002 Bacteria 2909
100 Ga0316583_10011905 3300032133 Bacteria 3139
101 Ga0316580_10008422 3300032139 Bacteria 3090
102 Ga0307507_10004406 3300033179 Bacteria 25054
103 Ga0307510_10050575 3300033180 Bacteria 4406
104 Ga0373929_0001711 3300035085 Bacteria 4125
105 Ga0316582_0001451 3300036647 Bacteria 10404
106 Ga0316584_0003507 3300036712 Bacteria 10224
107 Ga0395900_0078303 3300037418 Bacteria 3397
108 Ga0400485_01414 3300038735 Bacteria 113112
109 Ga0400486_30388 3300038742 Bacteria 18350
110 Ga0466972_0005452 3300044658 Bacteria 6375
111 Ga0466965_0000381 3300044683 Bacteria 15159
112 Ga0466965_0004796 3300044683 Bacteria 6032
113 Ga0466965_0025297 3300044683 Bacteria 2874
114 Ga0466970_0011932 3300044765 Bacteria 4435
115 Ga0466970_0024091 3300044765 Bacteria 3182
116 Ga0466970_0038034 3300044765 Bacteria 2552
117 Ga0466958_0019226 3300045836 Bacteria 3975
118 Ga0466958_0026587 3300045836 Bacteria 3421
119 Ga0495683_0001285 3300047323 Bacteria 16996
120 Ga0496102_0000271 3300048905 Bacteria 66136
121 Ga0496103_0000053 3300048906 Bacteria 148944
122 Ga0496104_0024305 3300048907 Bacteria 5573
123 Ga0496110_0062466 3300048913 Bacteria 3289
124 Ga0496110_0140527 3300048913 Bacteria 2183
125 Ga0496114_0095316 3300048917 Bacteria 2532
126 Ga0496117_0009275 3300048920 Bacteria 9195
127 Ga0496118_0021236 3300048921 Bacteria 5723
128 Ga0501034_0001652 3300049571 Bacteria 28812
129 Ga0501034_0029181 3300049571 Bacteria 5608
130 Ga0501044_0066812 3300049823 Bacteria 3665
131 Ga0501044_0172765 3300049823 Bacteria 2131
132 Ga0501044_0206776 3300049823 Bacteria 1919
133 nmdc:mga0n895_39920_c1 3300050512 Bacteria 4558
134 nmdc:mga0a205_65338_c1 3300050515 Bacteria 3515
135 Ga0500559_0002600 3300053136 Bacteria 9223
136 Ga0500568_0000557 3300053139 Bacteria 27409
137 Ga0501082_0006539 3300060353 Bacteria 10107
138 2537900505 2537561592 Bacteria 4348607
139 2552106208 2551306166 Bacteria 9731570
140 2586058555 2585427649 Bacteria 9053857
141 2729908919 2728369276 Bacteria 5610032
142 2739602673 2739367653 Bacteria 2780952
143 2744955614 2744054611 Bacteria 5611514
144 2753072580 2751185734 Bacteria 8863695
145 2816427152 2816332119 Bacteria 8120218
146 2816505155 2816332139 Bacteria 9138787
147 2817508854 2816332305 Bacteria 2697803
148 2839988704 2839986021 Bacteria 3685650
149 2857728562 2857727296 Bacteria 2745552
150 2870726967 2870721527 Bacteria 9689237
151 2893686642 2893684298 Bacteria 2897960
152 2899373538 2899370129 Bacteria 6781179
153 2905929089 2905926851 Bacteria 4423176
154 2915774454 2915768154 Bacteria 8424322
155 2920882204 2920879853 Bacteria 4216831
156 2932433237 2932431166 Bacteria 4215299
157 2956942413 2956939328 Bacteria 3474458
158 3001120626 3001119090 Bacteria 3449530
159 8004022176 8004021418 Bacteria 4313954
160 8004027806 8004025490 Bacteria 4327753
161 Ga0495655_0002381
162 JGI24737J22298_10011032
163 JGI24735J21928_10014166
164 Ga0070683_100136271
165 Ga0068869_100012329
166 Ga0070666_10012644
167 Ga0068868_100032523
168 Ga0070692_10018045
169 Ga0070668_100009952
170 Ga0070671_100106678
171 Ga0070659_100004135
172 Ga0070667_100058420
173 Ga0070703_10004840
174 Ga0070710_10000382
175 Ga0070710_10006950
176 Ga0070705_100008477
177 Ga0070705_100029850
178 Ga0070694_100015193
179 Ga0070663_100025374
180 Ga0070678_100027521
181 Ga0068853_100018813
182 Ga0070686_100027361
183 Ga0070665_100085131
184 Ga0070704_100031875
185 Ga0068855_100004754
186 Ga0068855_100008979
187 Ga0068855_100072387
188 Ga0070664_100031247
189 Ga0068856_100017657
190 Ga0070702_100003550
191 Ga0070702_100011700
192 Ga0068859_100005592
193 Ga0068859_100042144
194 Ga0068864_100015667
195 Ga0068860_100098484
196 Ga0081455_10006614
197 Ga0081540_1007527
198 Ga0081539_10006771
199 Ga0081539_10013128
200 Ga0070717_10044912
201 Ga0070716_100023595
202 Ga0075433_10020945
203 Ga0097620_100005592
204 Ga0097620_100042144
205 Ga0105240_10168491
206 Ga0105243_10015254
207 Ga0105243_10017710
208 Ga0105243_10039712
209 Ga0105242_10007129
210 Ga0105242_10030439
211 Ga0105248_10053341
212 Ga0105238_10043762
213 Ga0105246_10039310
214 Ga0157370_10106851
215 Ga0157374_10038716
216 Ga0157378_10007252
217 Ga0157378_10039323
218 Ga0163162_10111923
219 Ga0157372_10086589
220 Ga0157380_10022562
221 Ga0157380_10038548
222 Ga0157377_10010433
223 Ga0157379_10034535
224 Ga0157376_10019764
225 Ga0163161_10020661
226 Ga0207692_10000201
227 Ga0207710_10006662
228 Ga0207688_10002570
229 Ga0207647_10017964
230 Ga0207693_10002695
231 Ga0207657_10018845
232 Ga0207694_10010728
233 Ga0207686_10059671
234 Ga0207709_10018626
235 Ga0207665_10001282
236 Ga0207689_10009069
237 Ga0207667_10008641
238 Ga0207667_10080647
239 Ga0207712_10012431
240 Ga0207668_10101163
241 Ga0207640_10107506
242 Ga0207658_10041270
243 Ga0207678_10007397
244 Ga0207683_10013334
245 Ga0207698_10000453
246 Ga0268264_10137035
247 Ga0316181_1273576
248 Ga0316182_1192363
249 Ga0265327_10000019
250 Ga0307408_100046357
251 Ga0316575_10000006
252 Ga0316575_10026214
253 Ga0316579_10000018
254 Ga0316578_10038221
255 Ga0307518_10001915
256 Ga0307406_10074664
257 Ga0307409_100025863
258 Ga0307409_100058673
259 Ga0307416_100069821
260 Ga0316583_10011905
261 Ga0316580_10008422
262 Ga0307507_10004406
263 Ga0307510_10050575
264 Ga0373929_0001711
265 Ga0316582_0001451
266 Ga0316584_0003507
267 Ga0395900_0078303
268 Ga0400485_01414
269 Ga0400486_30388
270 Ga0466972_0005452
271 Ga0466965_0000381
272 Ga0466965_0004796
273 Ga0466965_0025297
274 Ga0466970_0011932
275 Ga0466970_0024091
276 Ga0466970_0038034
277 Ga0466958_0019226
278 Ga0466958_0026587
279 Ga0495683_0001285
280 Ga0496102_0000271
281 Ga0496103_0000053
282 Ga0496104_0024305
283 Ga0496110_0062466
284 Ga0496110_0140527
285 Ga0496114_0095316
286 Ga0496117_0009275
287 Ga0496118_0021236
288 Ga0501034_0001652
289 Ga0501034_0029181
290 Ga0501044_0066812
291 Ga0501044_0172765
292 Ga0501044_0206776
293 nmdc:mga0n895_39920_c1
294 nmdc:mga0a205_65338_c1
295 Ga0500559_0002600
296 Ga0500568_0000557
297 Ga0501082_0006539
298 2537900505
299 2552106208
300 2586058555
301 2729908919
302 2739602673
303 2744955614
304 2753072580
305 2816427152
306 2816505155
307 2817508854
308 2839988704
309 2857728562
310 2870726967
311 2893686642
312 2899373538
313 2905929089
314 2915774454
315 2920882204
316 2932433237
317 2956942413
318 3001120626
319 8004022176
320 8004027806

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03485

Arg_tRNA_synt_N

Arginyl tRNA synthetase N terminal domain

49

137

0.93

PF05746

DALR_1

DALR anticodon binding domain

471

592

0.92

PF00750

tRNA-synt_1d

tRNA synthetases class I (R)

148

456

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
3fnr-assembly1.cif.gz_A crystal structure of putative arginyl t-rna synthetase from campylobacter jejuni; 0.9196 94 552
3fnr-assembly1.cif.gz_A crystal structure of putative arginyl t-rna synthetase from campylobacter jejuni; 0.9177 94 552
3gdz-assembly4.cif.gz_D crystal structure of arginyl-trna synthetase from klebsiella pneumoniae subsp. pneumoniae 0.8283 3 105
1bs2-assembly1.cif.gz_A yeast arginyl-trna synthetase 0.77 35 552
3gdz-assembly4.cif.gz_D crystal structure of arginyl-trna synthetase from klebsiella pneumoniae subsp. pneumoniae 0.7641 3 105
ID Description Score Start End Superfamily
af_P9WFW5_3_109_3.30.1360.70 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Arginyl tRNA synthetase N-terminal domain 0.934 3 110 3.30.1360.70
af_P9WFW5_3_109_3.30.1360.70 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Arginyl tRNA synthetase N-terminal domain 0.9258 3 110 3.30.1360.70
af_Q3U186_457_578_1.10.730.10 Mainly Alpha;Orthogonal Bundle;Isoleucyl-tRNA Synthetase; Domain 1;Isoleucyl-tRNA Synthetase; Domain 1 0.9253 430 552 1.10.730.10
3fnrA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9173 120 424 3.40.50.620
af_P38714_519_643_1.10.730.10 Mainly Alpha;Orthogonal Bundle;Isoleucyl-tRNA Synthetase; Domain 1;Isoleucyl-tRNA Synthetase; Domain 1 0.9157 430 552 1.10.730.10
ID Description Score Start End GO Terms
AF-A0A6J6JF07-F1-model_v4 arginine--tRNA ligase (EC 6.1.1.19) 0.9871 429 552 GO:0004814
GO:0005524
GO:0006420
AF-A0A6I3D4R1-F1-model_v4 arginine--tRNA ligase (EC 6.1.1.19) 0.984 418 552 GO:0004814
GO:0005524
GO:0006420
AF-A0A6J6JF07-F1-model_v4 arginine--tRNA ligase (EC 6.1.1.19) 0.9716 429 552 GO:0004814
GO:0005524
GO:0006420
AF-A0A7X7DD01-F1-model_v4 Arginine--tRNA ligase (EC 6.1.1.19) 0.971 120 552 GO:0004814
GO:0005524
GO:0005737
GO:0006420
AF-X1M7C7-F1-model_v4 arginine--tRNA ligase (EC 6.1.1.19) 0.9703 426 552 GO:0004814
GO:0005524
GO:0006420

Map