F236507

General Info

Members Datasets Scaffolds Average Seq Length
161 102 153 801

Family's Representative Sequence

Representative Sequence 3300005563|Ga0068855_100008555|Ga0068855_1000085554
Length 856
Sequence MLLPSPKESVQKNTNKKSNKIMLLVTDNHPTVKKVSATNRRVVSLPKKQNTTMLTLGAAPLFAQTAKTAAGISGVLLDENGKPMDYATVSLLKAQDSTVVKGTLSTENGAYKFDHIAAGTYIIKASVVGYQKTASSTFTVAAGSQGITIPTLKLLPASHALNTVTVTASKPLIEHKVDRTVMNVENSVLAAGNTAMDILERAPGVSVDKDDNISLKGKQGVTVMLNDKLTYLSAAQLATLLRSTDGNTIASIEIITNPSAKYDAAGNSGIINIKLKKNKQTGTNGSLTAGAGYGAYGKDNETLNLNHKEGNLNVFGSFSHNDNKRTQYIGIKRIIIDSTGKRTYFNQATNMPQVNHNNSYRLGADYDLSSKNTIGFLASGYFNGEDDNNNTRTFIGQNFAEVDSSLHTTSLIHQTYHNIAFNLNDTWKLDTAGQQISADLDYSKFRNYVISTYATDFFLADGSMQHPQGFLGNITPSNIDIRTGKIDYSKPLSKSLKFESGLKFSDVKTDNNLLQTMDAAGPYISNNRFVYDEKINAGYINFNKDFKNFSVQVGLRAEYTSSSAVGDSASAVQSIQRHYLDFFPSVFLDRTLNDKNEINFSYSRRIDRPEYDNLNPFVYHLDPYTYQKGNPYLKPQYTNNFEFNYTYNKSITLTLGYSRTTDVITEIPGTDPTTKVSFVTQQNLQIQNSYNANLYAPYTFTKWWEGNVNITAFYLGFKSNSLEGSNLNSGQAAYQIRATETFTPVKGYKLELTTNYQSALVYGLFNVKPQYSTDAGISHSFANKKLNVKFSVSDIFNTRTNDVTSYYANNNLDITQKRETRISRLTLTYNFGNNKIKAREHQTGADDEKNRVKGAN

Samples

Sample ID Description Type Environment
1 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
2 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
3 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
4 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
5 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
6 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
7 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
8 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
9 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
10 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
11 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
12 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
13 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
14 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
15 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
16 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
17 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
18 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
19 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
20 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
21 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
22 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
23 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
24 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
25 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
26 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
27 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
28 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
29 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
30 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
31 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
40 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
41 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
42 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
45 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
46 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
47 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
48 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
49 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
50 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
66 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
67 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
68 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
69 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
70 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
71 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
72 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
73 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
74 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
75 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
76 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
77 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
78 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
79 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
80 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
81 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
82 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
83 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
84 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
85 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
86 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
87 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
88 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
89 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
90 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
91 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
92 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
93 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
94 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
95 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
96 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
97 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
98 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
99 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
100 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
101 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
102 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.03
Metatranscriptomes 0
Isolates 4.97

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.94
Nodule 0
Rhizoplane 0.62
Rhizosphere 77.02
Stem 0
Stem Tuber 0
Unclassified 12.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10000721 3300001979 Bacteria 14384
2 JGI24737J22298_10000244 3300001990 Bacteria 18130
3 JGI24735J21928_10000011 3300002067 Bacteria 217841
4 JGI25162J39368_1000055 3300002737 Bacteria 147236
5 JGI25154J39366_1000022 3300002738 Bacteria 219590
6 rootH1_10013712 3300003316 Bacteria 7148
7 rootH1_10028882 3300003316 Bacteria 24442
8 rootH2_10000579 3300003320 Bacteria 178428
9 rootH2_10023821 3300003320 Bacteria 5364
10 rootL2_10039316 3300003322 Bacteria 6418
11 rootH1_10054398 3300003323 Bacteria 12418
12 rootH1_10164189 3300003323 Bacteria 6638
13 Ga0055531_10000101 3300003794 Bacteria 93150
14 Ga0065165_1006930 3300005262 Bacteria 5749
15 Ga0065714_10004126 3300005288 Bacteria 8200
16 Ga0070676_10002604 3300005328 Bacteria 9283
17 Ga0068868_100007682 3300005338 Bacteria 7694
18 Ga0070673_100033294 3300005364 Bacteria 3890
19 Ga0070663_100002414 3300005455 Bacteria 10508
20 Ga0070662_100000050 3300005457 Bacteria 64208
21 Ga0068867_100003522 3300005459 Bacteria 11005
22 Ga0070679_100006032 3300005530 Bacteria 11275
23 Ga0070665_100000012 3300005548 Bacteria 508937
24 Ga0068855_100000611 3300005563 Bacteria 43912
25 Ga0068855_100008555 3300005563 Bacteria 12371
26 Ga0068855_100033377 3300005563 Bacteria 6143
27 Ga0068855_100053815 3300005563 Bacteria 4735
28 Ga0068856_100000030 3300005614 Bacteria 128494
29 Ga0068856_100058713 3300005614 Bacteria 3800
30 Ga0068856_100084874 3300005614 Bacteria 3146
31 Ga0068852_100018279 3300005616 Bacteria 5522
32 Ga0075366_10000090 3300006195 Bacteria 36322
33 Ga0097621_100000099 3300006237 Bacteria 48404
34 Ga0068871_100001752 3300006358 Bacteria 14629
35 Ga0068865_100000315 3300006881 Bacteria 26719
36 Ga0105240_10000623 3300009093 Bacteria 65495
37 Ga0105240_10008525 3300009093 Bacteria 14647
38 Ga0105240_10048684 3300009093 Bacteria 5355
39 Ga0105240_10120377 3300009093 Bacteria 3161
40 Ga0105241_10000596 3300009174 Bacteria 27192
41 Ga0105241_10002391 3300009174 Bacteria 14096
42 Ga0105241_10005894 3300009174 Bacteria 9042
43 Ga0105237_10000732 3300009545 Bacteria 45248
44 Ga0105237_10000799 3300009545 Bacteria 43092
45 Ga0105237_10001359 3300009545 Bacteria 32392
46 Ga0105237_10003130 3300009545 Bacteria 19918
47 Ga0105239_10000014 3300010375 Bacteria 325391
48 Ga0105239_10000074 3300010375 Bacteria 140673
49 Ga0105239_10000327 3300010375 Bacteria 70423
50 Ga0105239_10002660 3300010375 Bacteria 22516
51 Ga0105239_10003978 3300010375 Bacteria 17911
52 Ga0105239_10020186 3300010375 Bacteria 7351
53 Ga0105239_10044303 3300010375 Bacteria 4878
54 Ga0157371_10005901 3300013102 Bacteria 10230
55 Ga0157374_10000868 3300013296 Bacteria 26417
56 Ga0157374_10003359 3300013296 Bacteria 13437
57 Ga0157374_10010237 3300013296 Bacteria 8064
58 Ga0163162_10000062 3300013306 Bacteria 105579
59 Ga0163162_10002344 3300013306 Bacteria 17789
60 Ga0157372_10000029 3300013307 Bacteria 180371
61 Ga0157372_10001210 3300013307 Bacteria 27930
62 Ga0157375_10055454 3300013308 Bacteria 3908
63 Ga0209437_100130 3300025233 Bacteria 183731
64 Ga0209646_1000003 3300025246 Bacteria 1160860
65 Ga0209026_1000354 3300025250 Bacteria 43355
66 Ga0209026_1000515 3300025250 Bacteria 27239
67 Ga0209233_1003427 3300025261 Bacteria 5584
68 Ga0209758_1003570 3300025297 Bacteria 13953
69 Ga0207426_1000187 3300025302 Bacteria 153809
70 Ga0209257_1000025 3300025304 Bacteria 724838
71 Ga0207647_10000116 3300025904 Bacteria 61857
72 Ga0207647_10019056 3300025904 Bacteria 4621
73 Ga0207645_10001500 3300025907 Bacteria 19101
74 Ga0207705_10000031 3300025909 Bacteria 228571
75 Ga0207654_10001795 3300025911 Bacteria 11148
76 Ga0207695_10000197 3300025913 Bacteria 168837
77 Ga0207695_10004344 3300025913 Bacteria 19409
78 Ga0207695_10008267 3300025913 Bacteria 13053
79 Ga0207695_10061115 3300025913 Bacteria 3895
80 Ga0207695_10101294 3300025913 Bacteria 2874
81 Ga0207671_10000803 3300025914 Bacteria 39858
82 Ga0207671_10001924 3300025914 Bacteria 23045
83 Ga0207671_10002547 3300025914 Bacteria 19378
84 Ga0207671_10004629 3300025914 Bacteria 13034
85 Ga0207671_10009336 3300025914 Bacteria 8210
86 Ga0207652_10030296 3300025921 Bacteria 4529
87 Ga0207706_10000007 3300025933 Bacteria 211081
88 Ga0207704_10000123 3300025938 Bacteria 41995
89 Ga0207667_10000477 3300025949 Bacteria 53347
90 Ga0207667_10005847 3300025949 Bacteria 14983
91 Ga0207667_10012383 3300025949 Bacteria 9830
92 Ga0207667_10049139 3300025949 Bacteria 4458
93 Ga0207677_10006158 3300026023 Bacteria 6555
94 Ga0207702_10000133 3300026078 Bacteria 88338
95 Ga0207702_10082364 3300026078 Bacteria 2797
96 Ga0207648_10000913 3300026089 Bacteria 33285
97 Ga0268266_10000039 3300028379 Bacteria 324579
98 Ga0307517_10000363 3300028786 Bacteria 78039
99 Ga0307515_10016611 3300028794 Bacteria 13462
100 Ga0307515_10025780 3300028794 Bacteria 10151
101 Ga0265338_10037389 3300028800 Bacteria 4621
102 Ga0307408_100000655 3300031548 Bacteria 29072
103 Ga0307408_100002101 3300031548 Bacteria 14336
104 Ga0307507_10000097 3300033179 Bacteria 139761
105 Ga0307510_10000414 3300033180 Bacteria 40819
106 Ga0307510_10034970 3300033180 Bacteria 5617
107 Ga0395899_0000050 3300037312 Bacteria 224591
108 Ga0395899_0003108 3300037312 Bacteria 13221
109 Ga0395899_0006804 3300037312 Bacteria 8861
110 Ga0395900_0000204 3300037418 Bacteria 92834
111 Ga0395898_0004106 3300037466 Bacteria 15968
112 Ga0395905_0002790 3300037471 Bacteria 19141
113 Ga0395901_0010710 3300038443 Bacteria 9296
114 Ga0395901_0021481 3300038443 Bacteria 6614
115 Ga0436361_0613386 3300039447 Bacteria 9309
116 Ga0466969_0018532 3300044656 Bacteria 3625
117 Ga0495650_0000236 3300046471 Bacteria 111056
118 Ga0495585_0000201 3300046492 Bacteria 62206
119 Ga0495585_0011559 3300046492 Bacteria 5223
120 Ga0495606_0000036 3300046507 Bacteria 234596
121 Ga0495606_0007584 3300046507 Bacteria 9662
122 Ga0495610_0001790 3300046512 Bacteria 18760
123 Ga0495616_0004821 3300046513 Bacteria 8452
124 Ga0495631_0001136 3300046518 Bacteria 16514
125 Ga0495648_0016288 3300046524 Bacteria 5364
126 Ga0495609_0001898 3300046538 Bacteria 13324
127 Ga0495633_0000466 3300046558 Bacteria 41439
128 Ga0495633_0000886 3300046558 Bacteria 25736
129 Ga0495668_0000113 3300046616 Bacteria 128428
130 Ga0495625_0000007 3300046660 Bacteria 565749
131 Ga0495625_0000305 3300046660 Bacteria 75021
132 Ga0495625_0000879 3300046660 Bacteria 40744
133 Ga0495625_0038112 3300046660 Bacteria 3520
134 Ga0495661_0002465 3300046665 Bacteria 14236
135 Ga0495661_0006954 3300046665 Bacteria 7907
136 Ga0495649_0000038 3300046694 Bacteria 128764
137 Ga0495660_0005317 3300046810 Bacteria 7711
138 Ga0495683_0006340 3300047323 Bacteria 6467
139 Ga0495687_011048 3300047443 Bacteria 4886
140 Ga0495686_0000083 3300047472 Bacteria 198933
141 Ga0495686_0000152 3300047472 Bacteria 133713
142 Ga0495686_0002372 3300047472 Bacteria 17946
143 Ga0495686_0002688 3300047472 Bacteria 16332
144 Ga0495686_0006090 3300047472 Bacteria 9341
145 Ga0495686_0025182 3300047472 Bacteria 3902
146 Ga0496121_0000028 3300048924 Bacteria 439193
147 nmdc:mga0k408_153_c1 3300050493 Bacteria 35307
148 nmdc:mga0k408_158_c1 3300050493 Bacteria 35033
149 Ga0500635_0004857 3300053080 Bacteria 3489
150 Ga0500608_001032 3300053122 Bacteria 9981
151 Ga0500618_000020 3300053125 Bacteria 161356
152 Ga0500642_0019177 3300053130 Bacteria 2662
153 Ga0500622_0001344 3300053156 Bacteria 19897

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300010375 Ga0105239_10044303 Ga0105239_100443032 647
2 3300053130 Ga0500642_0019177 Ga0500642_0019177_372_2633 696
3 3300003320 rootH2_10000579 rootH2_100005792 710
4 3300053125 Ga0500618_000020 Ga0500618_000020_98828_101278 710
5 3300009093 Ga0105240_10120377 Ga0105240_101203771 719
6 3300025913 Ga0207695_10101294 Ga0207695_101012942 719
7 3300047472 Ga0495686_0025182 Ga0495686_0025182_262_2730 719
8 3300047472 Ga0495686_0000083 Ga0495686_0000083_95535_97964 723
9 3300005563 Ga0068855_100053815 Ga0068855_1000538152 724
10 3300025949 Ga0207667_10049139 Ga0207667_100491392 724
11 3300001990 JGI24737J22298_10000244 JGI24737J22298_100002447 726
12 3300002067 JGI24735J21928_10000011 JGI24735J21928_10000011141 726
13 3300013307 Ga0157372_10001210 Ga0157372_100012105 726
14 3300039447 Ga0436361_0613386 Ga0436361_0613386_2903_5350 726
15 3300047472 Ga0495686_0006090 Ga0495686_0006090_530_2977 726
16 3300009093 Ga0105240_10048684 Ga0105240_100486842 727
17 3300047472 Ga0495686_0002372 Ga0495686_0002372_9253_11697 728
18 3300003322 rootL2_10039316 rootL2_100393163 729
19 3300046810 Ga0495660_0005317 Ga0495660_0005317_141_2588 730
20 3300002737 JGI25162J39368_1000055 JGI25162J39368_100005551 732
21 3300010375 Ga0105239_10000327 Ga0105239_1000032744 732
22 3300025233 Ga0209437_100130 Ga0209437_10013087 732
23 3300025914 Ga0207671_10000803 Ga0207671_1000080327 733
24 3300005614 Ga0068856_100000030 Ga0068856_10000003028 735
25 3300026078 Ga0207702_10000133 Ga0207702_100001335 735
26 3300005455 Ga0070663_100002414 Ga0070663_1000024142 736
27 3300010375 Ga0105239_10002660 Ga0105239_1000266019 736
28 3300025913 Ga0207695_10061115 Ga0207695_100611152 736
29 3300047472 Ga0495686_0002688 Ga0495686_0002688_8878_11334 736
30 3300003323 rootH1_10164189 rootH1_101641892 737
31 3300009093 Ga0105240_10000623 Ga0105240_1000062318 738
32 3300009174 Ga0105241_10002391 Ga0105241_100023911 738
33 3300009545 Ga0105237_10003130 Ga0105237_100031305 738
34 3300010375 Ga0105239_10003978 Ga0105239_1000397810 738
35 3300037312 Ga0395899_0000050 Ga0395899_0000050_6634_9135 738
36 3300037312 Ga0395899_0003108 Ga0395899_0003108_217_2604 738
37 3300037471 Ga0395905_0002790 Ga0395905_0002790_4130_6517 738
38 3300038443 Ga0395901_0010710 Ga0395901_0010710_6725_9112 738
39 3300046660 Ga0495625_0000879 Ga0495625_0000879_37214_39661 738
40 3300050493 nmdc:mga0k408_153_c1 nmdc:mga0k408_153_c1_23253_25700 738
41 3300005288 Ga0065714_10004126 Ga0065714_100041264 739
42 3300033180 Ga0307510_10034970 Ga0307510_100349703 739
43 3300025250 Ga0209026_1000515 Ga0209026_10005159 740
44 3300046507 Ga0495606_0000036 Ga0495606_0000036_174608_177055 740
45 3300005614 Ga0068856_100084874 Ga0068856_1000848742 741
46 3300026078 Ga0207702_10082364 Ga0207702_100823642 741
47 3300046492 Ga0495585_0011559 Ga0495585_0011559_1391_3841 741
48 3300046524 Ga0495648_0016288 Ga0495648_0016288_2904_5354 741
49 3300046616 Ga0495668_0000113 Ga0495668_0000113_115190_117640 741
50 3300046660 Ga0495625_0000305 Ga0495625_0000305_5109_7559 741
51 3300003320 rootH2_10023821 rootH2_100238213 742
52 3300013306 Ga0163162_10002344 Ga0163162_1000234410 742
53 3300046660 Ga0495625_0038112 Ga0495625_0038112_485_2953 742
54 3300003316 rootH1_10028882 rootH1_1002888219 743
55 3300005457 Ga0070662_100000050 Ga0070662_10000005044 743
56 3300009174 Ga0105241_10000596 Ga0105241_1000059618 743
57 3300013296 Ga0157374_10003359 Ga0157374_100033596 743
58 3300025904 Ga0207647_10000116 Ga0207647_1000011633 743
59 3300025911 Ga0207654_10001795 Ga0207654_100017954 743
60 3300025913 Ga0207695_10008267 Ga0207695_100082676 743
61 3300025933 Ga0207706_10000007 Ga0207706_10000007168 743
62 3300031548 Ga0307408_100002101 Ga0307408_1000021019 743
63 3300013102 Ga0157371_10005901 Ga0157371_100059014 744
64 3300013307 Ga0157372_10000029 Ga0157372_10000029121 744
65 3300013308 Ga0157375_10055454 Ga0157375_100554542 744
66 3300028794 Ga0307515_10025780 Ga0307515_100257805 744
67 3300044656 Ga0466969_0018532 Ga0466969_0018532_612_3083 744
68 3300033179 Ga0307507_10000097 Ga0307507_10000097110 745
69 3300046471 Ga0495650_0000236 Ga0495650_0000236_108356_110803 746
70 3300046513 Ga0495616_0004821 Ga0495616_0004821_1603_4050 746
71 3300046660 Ga0495625_0000007 Ga0495625_0000007_542530_544977 746
72 3300046665 Ga0495661_0006954 Ga0495661_0006954_3602_6049 746
73 3300046694 Ga0495649_0000038 Ga0495649_0000038_20796_23243 746
74 3300047443 Ga0495687_011048 Ga0495687_011048_205_2652 746
75 3300047472 Ga0495686_0000152 Ga0495686_0000152_111986_114436 746
76 3300025904 Ga0207647_10019056 Ga0207647_100190563 747
77 3300046492 Ga0495585_0000201 Ga0495585_0000201_24230_26677 747
78 3300046512 Ga0495610_0001790 Ga0495610_0001790_10184_12631 747
79 3300046558 Ga0495633_0000886 Ga0495633_0000886_9268_11715 747
80 3300005262 Ga0065165_1006930 Ga0065165_10069302 748
81 3300046507 Ga0495606_0007584 Ga0495606_0007584_2001_4475 748
82 3300053156 Ga0500622_0001344 Ga0500622_0001344_8917_11433 749
83 3300003323 rootH1_10054398 rootH1_100543982 750
84 3300005563 Ga0068855_100000611 Ga0068855_10000061134 750
85 3300025949 Ga0207667_10000477 Ga0207667_1000047717 750
86 3300028786 Ga0307517_10000363 Ga0307517_1000036362 750
87 3300046518 Ga0495631_0001136 Ga0495631_0001136_9717_12197 750
88 3300053122 Ga0500608_001032 Ga0500608_001032_4304_6754 750
89 3300003316 rootH1_10013712 rootH1_100137124 751
90 3300037418 Ga0395900_0000204 Ga0395900_0000204_67832_70282 751
91 3300046665 Ga0495661_0002465 Ga0495661_0002465_9857_12316 751
92 iso_pu_bacteria 8055588893 8055591511 751
93 3300010375 Ga0105239_10000014 Ga0105239_1000001415 752
94 3300025261 Ga0209233_1003427 Ga0209233_10034271 752
95 3300031548 Ga0307408_100000655 Ga0307408_10000065511 752
96 3300053080 Ga0500635_0004857 Ga0500635_0004857_576_3029 752
97 3300003794 Ga0055531_10000101 Ga0055531_1000010175 753
98 3300025304 Ga0209257_1000025 Ga0209257_1000025170 753
99 3300025913 Ga0207695_10000197 Ga0207695_1000019739 753
100 3300025914 Ga0207671_10002547 Ga0207671_100025474 753
101 3300037312 Ga0395899_0006804 Ga0395899_0006804_5044_7494 753
102 3300038443 Ga0395901_0021481 Ga0395901_0021481_3621_6071 753
103 3300037466 Ga0395898_0004106 Ga0395898_0004106_5182_7632 754
104 3300006195 Ga0075366_10000090 Ga0075366_1000009026 755
105 3300009545 Ga0105237_10000799 Ga0105237_1000079926 755
106 3300010375 Ga0105239_10000074 Ga0105239_1000007481 755
107 3300025914 Ga0207671_10004629 Ga0207671_100046291 755
108 3300047323 Ga0495683_0006340 Ga0495683_0006340_3455_5896 755
109 3300048924 Ga0496121_0000028 Ga0496121_0000028_164522_166981 755
110 3300050493 nmdc:mga0k408_158_c1 nmdc:mga0k408_158_c1_29164_31623 755
111 iso_pu_bacteria 2599185184 2599480505 755
112 iso_pu_bacteria 2919437846 2919439588 755
113 iso_pu_bacteria 2928078545 2928081252 755
114 iso_pu_bacteria 2928147474 2928150571 755
115 iso_pu_bacteria 2932082852 2932085391 755
116 3300046558 Ga0495633_0000466 Ga0495633_0000466_15243_17681 756
117 3300005614 Ga0068856_100058713 Ga0068856_1000587132 757
118 iso_pu_bacteria 2852623160 2852626655 757
119 iso_pu_bacteria 2884933994 2884935082 757
120 3300009545 Ga0105237_10000732 Ga0105237_1000073218 758
121 3300025914 Ga0207671_10001924 Ga0207671_1000192410 758
122 3300033180 Ga0307510_10000414 Ga0307510_1000041419 758
123 3300005328 Ga0070676_10002604 Ga0070676_100026045 759
124 3300005338 Ga0068868_100007682 Ga0068868_1000076823 759
125 3300005364 Ga0070673_100033294 Ga0070673_1000332942 759
126 3300005459 Ga0068867_100003522 Ga0068867_1000035222 759
127 3300005530 Ga0070679_100006032 Ga0070679_1000060327 759
128 3300005548 Ga0070665_100000012 Ga0070665_100000012393 759
129 3300005563 Ga0068855_100008555 Ga0068855_1000085554 759
130 3300005563 Ga0068855_100033377 Ga0068855_1000333773 759
131 3300005616 Ga0068852_100018279 Ga0068852_1000182794 759
132 3300006237 Ga0097621_100000099 Ga0097621_10000009937 759
133 3300006358 Ga0068871_100001752 Ga0068871_1000017525 759
134 3300006881 Ga0068865_100000315 Ga0068865_10000031521 759
135 3300009093 Ga0105240_10008525 Ga0105240_100085259 759
136 3300009174 Ga0105241_10005894 Ga0105241_100058943 759
137 3300009545 Ga0105237_10001359 Ga0105237_100013594 759
138 3300010375 Ga0105239_10020186 Ga0105239_100201863 759
139 3300013296 Ga0157374_10000868 Ga0157374_1000086822 759
140 3300013296 Ga0157374_10010237 Ga0157374_100102372 759
141 3300013306 Ga0163162_10000062 Ga0163162_1000006223 759
142 3300025907 Ga0207645_10001500 Ga0207645_100015005 759
143 3300025909 Ga0207705_10000031 Ga0207705_10000031202 759
144 3300025913 Ga0207695_10004344 Ga0207695_100043448 759
145 3300025914 Ga0207671_10009336 Ga0207671_100093362 759
146 3300025921 Ga0207652_10030296 Ga0207652_100302961 759
147 3300025938 Ga0207704_10000123 Ga0207704_1000012320 759
148 3300025949 Ga0207667_10005847 Ga0207667_100058479 759
149 3300025949 Ga0207667_10012383 Ga0207667_100123835 759
150 3300026023 Ga0207677_10006158 Ga0207677_100061583 759
151 3300026089 Ga0207648_10000913 Ga0207648_1000091323 759
152 3300028379 Ga0268266_10000039 Ga0268266_1000003977 759
153 3300028794 Ga0307515_10016611 Ga0307515_100166116 759
154 3300028800 Ga0265338_10037389 Ga0265338_100373893 759
155 3300046538 Ga0495609_0001898 Ga0495609_0001898_5355_7805 759
156 3300002738 JGI25154J39366_1000022 JGI25154J39366_1000022157 771
157 3300025246 Ga0209646_1000003 Ga0209646_1000003359 771
158 3300025250 Ga0209026_1000354 Ga0209026_100035426 771
159 3300025297 Ga0209758_1003570 Ga0209758_10035706 771
160 3300025302 Ga0207426_1000187 Ga0207426_100018796 771
161 3300001979 JGI24740J21852_10000721 JGI24740J21852_100007213 772

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14905

OMP_b-brl_3

Outer membrane protein beta-barrel family

427

829

0.95

PF13620

CarboxypepD_reg

Carboxypeptidase regulatory-like domain

71

153

0.91

PF13715

CarbopepD_reg_2

CarboxypepD_reg-like domain

72

166

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
4v4c-assembly3.cif.gz_F crystal structure of pyrogallol-phloroglucinol transhydroxylase from pelobacter acidigallici 0.8898 28 112
3e8v-assembly1.cif.gz_A crystal structure of a possible transglutaminase-family protein proteolytic fragment from bacteroides fragilis 0.8384 30 113
3e8v-assembly1.cif.gz_A crystal structure of a possible transglutaminase-family protein proteolytic fragment from bacteroides fragilis 0.8198 30 113
3is1-assembly1.cif.gz_X crystal structure of functional region of uafa from staphylococcus saprophyticus in c2 form at 2.45 angstrom resolution 0.7767 29 115
3is0-assembly1.cif.gz_X crystal structure of functional region of uafa from staphylococcus saprophyticus in the presence of cholesterol 0.7714 29 115
ID Description Score Start End Superfamily
1ti2B03 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.8901 28 112 2.60.40.10
af_E7FFQ7_314_405_2.60.40.1120 Mainly Beta;Sandwich;Immunoglobulin-like;Carboxypeptidase-like, regulatory domain 0.8577 32 116 2.60.40.1120
1ti2B03 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.8423 28 112 2.60.40.10
3e8vA00 Mainly Beta;Sandwich;Immunoglobulin-like;Carboxypeptidase-like, regulatory domain 0.8384 30 113 2.60.40.1120
af_D4A536_407_501_2.60.40.1120 Mainly Beta;Sandwich;Immunoglobulin-like;Carboxypeptidase-like, regulatory domain 0.8353 32 116 2.60.40.1120
ID Description Score Start End GO Terms
AF-A0A1N7DFG8-F1-model_v4 Carboxypeptidase regulatory-like domain-containing protein 0.9059 29 114 GO:0004180
AF-A0A251XPC2-F1-model_v4 Alpha-amylase 0.8911 30 112 GO:0005975
AF-K4R6Q1-F1-model_v4 Integral membrane transport protein 0.888 29 114 GO:0005886
GO:0005975
GO:0022857
AF-A0A1I6LEP5-F1-model_v4 Carboxypeptidase regulatory-like domain-containing protein 0.8748 23 120 GO:0004180
GO:0008237
GO:0008270
GO:0030246
AF-A0A3D3TH35-F1-model_v4 Outer membrane protein beta-barrel domain-containing protein 0.8723 414 768 GO:0009279

Feature Viewer

pLDDT pTM Quality
72.36 0.63 Medium
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Predicted Structure (AlphaFold2)

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