F237101

General Info

Members Datasets Scaffolds Average Seq Length
161 116 322 284

Family's Representative Sequence

Representative Sequence 3300025298|Ga0209050_1002398|Ga0209050_100239814
Length 315
Sequence MWLVIGGGQGLAIIQMEMITRWGMGFRICAMKNIPVRQIKAAPKEANVSEGFSIRDVRHLLAGKDMVQELHRHDFFYVLALKKGAGHHEIDFTRYKVCDHAVFLMRPGQVHQHTLKAGSTGYLVEFSPDFYRPRDKASRQPLRKAMATNLHSLDATRFNKLLPLLTYIFQEYTDKQEGHGEVIKANLGIFFIELVRQNSKAASNNANTYAQERLEDFLELLEKHIAQHKQVAQYSDMLNLSPYQLNAITKATLGKTCSELINAHIILESKRYLLATSNQVNQVAYYLGYEDVSYFIRFFKKHTGYSPEAFRHNFR

Samples

Sample ID Description Type Environment
1 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
2 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
3 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
6 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
7 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
8 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
9 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
10 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
11 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
12 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
13 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
14 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
17 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
18 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
21 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
24 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
30 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
31 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
32 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
33 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
34 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
35 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
36 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
37 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
38 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
41 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
42 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
43 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
44 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
45 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
57 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
58 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
59 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
60 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
61 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
62 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
63 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
64 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
65 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
66 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
67 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
68 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
69 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
70 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
71 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
72 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
73 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
74 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
75 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
76 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
77 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
78 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
79 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
80 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
81 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
82 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
83 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
84 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
85 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
88 3300049677 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_A_3_control Metagenome Rhizosphere
89 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
90 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
91 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
92 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
93 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
94 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
95 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
96 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
97 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
98 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
99 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
100 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
101 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
102 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
103 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
104 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
105 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
106 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
107 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
108 2738541283 Pedobacter sp. OK701 Isolate Unclassified
109 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
110 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
111 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
112 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
113 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
114 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
115 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
116 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.41
Metatranscriptomes 0
Isolates 5.59

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 27.33
Nodule 0
Rhizoplane 0
Rhizosphere 60.87
Stem 0
Stem Tuber 0
Unclassified 10.56

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0209050_1002398 3300025298 Bacteria 16238
2 JGI25158J39367_1012198 3300002739 Bacteria 1136
3 JGI25153J46596_10034093 3300003215 Unclassified 1669
4 rootL2_10011536 3300003322 Bacteria 7296
5 rootL2_10077340 3300003322 Bacteria 4202
6 rootL2_10119806 3300003322 Bacteria 5190
7 rootL2_10205891 3300003322 Bacteria 3206
8 rootL2_10227036 3300003322 Bacteria 5355
9 JGI25160J50197_1000925 3300003354 Bacteria 15441
10 JGI25160J50197_1013995 3300003354 Bacteria 2705
11 Ga0055542_1007150 3300003762 Unclassified 2302
12 Ga0055526_1010384 3300003771 Bacteria 4339
13 Ga0055528_1000447 3300003790 Bacteria 33056
14 Ga0055530_10009769 3300003791 Bacteria 3633
15 Ga0055530_10023170 3300003791 Bacteria 1790
16 Ga0065165_1000012 3300005262 Bacteria 303241
17 Ga0065704_10074738 3300005289 Bacteria 6047
18 Ga0070666_10092930 3300005335 Bacteria 2074
19 Ga0070682_100421708 3300005337 Bacteria 1014
20 Ga0068853_100002429 3300005539 Bacteria 13931
21 Ga0068853_100017026 3300005539 Bacteria 5994
22 Ga0068853_100030061 3300005539 Bacteria 4586
23 Ga0068856_100322408 3300005614 Unclassified 1562
24 Ga0068859_100265561 3300005617 Unclassified 1808
25 Ga0068864_100115468 3300005618 Bacteria 2395
26 Ga0068860_100014042 3300005843 Bacteria 7856
27 Ga0068862_100039406 3300005844 Unclassified 4013
28 Ga0097621_100033594 3300006237 Bacteria 4086
29 Ga0097620_100265555 3300006931 Unclassified 1808
30 Ga0105240_10000242 3300009093 Bacteria 108001
31 Ga0105240_10000339 3300009093 Bacteria 87543
32 Ga0105240_10062799 3300009093 Bacteria 4623
33 Ga0105240_10170408 3300009093 Bacteria 2579
34 Ga0105240_10212410 3300009093 Bacteria 2260
35 Ga0105245_10322113 3300009098 Bacteria 1523
36 Ga0114129_10007582 3300009147 Bacteria 15450
37 Ga0105237_10007266 3300009545 Bacteria 12154
38 Ga0105237_10012929 3300009545 Bacteria 8769
39 Ga0105238_10071522 3300009551 Bacteria 3466
40 Ga0105249_10061705 3300009553 Bacteria 3440
41 Ga0105239_10001445 3300010375 Bacteria 31648
42 Ga0105239_10032390 3300010375 Bacteria 5745
43 Ga0105239_10497363 3300010375 Unclassified 1386
44 Ga0157371_10099874 3300013102 Bacteria 2058
45 Ga0157370_10000483 3300013104 Bacteria 49618
46 Ga0157370_10006807 3300013104 Bacteria 12534
47 Ga0157370_10037625 3300013104 Bacteria 4690
48 Ga0163162_10008511 3300013306 Bacteria 10005
49 Ga0157372_10372737 3300013307 Bacteria 1663
50 Ga0182008_10039465 3300014497 Bacteria 2359
51 Ga0157376_10379046 3300014969 Bacteria 1362
52 Ga0182006_1000643 3300015261 Bacteria 24749
53 Ga0182006_1019121 3300015261 Bacteria 2888
54 Ga0163161_10006365 3300017792 Bacteria 8172
55 Ga0163161_10140788 3300017792 Bacteria 1827
56 Ga0209436_100969 3300025208 Bacteria 11188
57 Ga0209258_100278 3300025242 Bacteria 86316
58 Ga0209148_1000248 3300025254 Bacteria 86083
59 Ga0209673_1000446 3300025273 Bacteria 70476
60 Ga0209673_1015728 3300025273 Bacteria 2859
61 Ga0209130_1001912 3300025284 Bacteria 11729
62 Ga0209564_1001170 3300025295 Bacteria 30528
63 Ga0209564_1002721 3300025295 Bacteria 13339
64 Ga0209758_1001411 3300025297 Bacteria 28476
65 Ga0209758_1002522 3300025297 Bacteria 18526
66 Ga0209050_1001619 3300025298 Bacteria 23124
67 Ga0209050_1015891 3300025298 Bacteria 3121
68 Ga0207426_1000288 3300025302 Bacteria 100477
69 Ga0207426_1000754 3300025302 Bacteria 36199
70 Ga0207426_1006625 3300025302 Bacteria 4985
71 Ga0209051_1009598 3300025303 Bacteria 4969
72 Ga0209257_1000686 3300025304 Bacteria 52620
73 Ga0207680_10097707 3300025903 Bacteria 1881
74 Ga0207695_10000066 3300025913 Bacteria 334103
75 Ga0207695_10000469 3300025913 Bacteria 87551
76 Ga0207695_10081665 3300025913 Bacteria 3271
77 Ga0207671_10036945 3300025914 Bacteria 3622
78 Ga0207671_10133010 3300025914 Bacteria 1910
79 Ga0207669_10390236 3300025937 Bacteria 1087
80 Ga0207639_10014430 3300026041 Bacteria 5557
81 Ga0207639_10015016 3300026041 Bacteria 5455
82 Ga0207639_10137192 3300026041 Bacteria 2033
83 Ga0207702_10284437 3300026078 Unclassified 1564
84 Ga0207676_10214997 3300026095 Bacteria 1708
85 Ga0268265_10030022 3300028380 Unclassified 3911
86 Ga0268264_10061175 3300028381 Bacteria 3158
87 Ga0307515_10000135 3300028794 Bacteria 175323
88 Ga0307515_10102161 3300028794 Bacteria 3452
89 Ga0307511_10000387 3300030521 Bacteria 47111
90 Ga0316179_1098529 3300030734 Bacteria 4246
91 Ga0307509_10067153 3300031507 Bacteria 3758
92 Ga0307408_100001565 3300031548 Bacteria 16910
93 Ga0307408_100001580 3300031548 Bacteria 16814
94 Ga0307408_100005122 3300031548 Bacteria 8797
95 Ga0307508_10001251 3300031616 Bacteria 29009
96 Ga0307514_10065754 3300031649 Unclassified 2745
97 Ga0307405_10000001 3300031731 Bacteria 1731270
98 Ga0307413_10002025 3300031824 Bacteria 8062
99 Ga0307413_10075178 3300031824 Bacteria 2143
100 Ga0307518_10096481 3300031838 Bacteria 2121
101 Ga0307410_10013903 3300031852 Bacteria 4714
102 Ga0307406_10000042 3300031901 Bacteria 72211
103 Ga0307407_10004183 3300031903 Bacteria 6083
104 Ga0307412_10000519 3300031911 Bacteria 23013
105 Ga0307414_10000022 3300032004 Bacteria 212123
106 Ga0307414_10000574 3300032004 Bacteria 19147
107 Ga0307414_10001002 3300032004 Bacteria 14432
108 Ga0307414_10025529 3300032004 Bacteria 3787
109 Ga0307411_10000001 3300032005 Bacteria 931810
110 Ga0439466_0000804 3300041411 Bacteria 11943
111 Ga0451851_0405561 3300041507 Bacteria 1823
112 Ga0466965_0008619 3300044683 Bacteria 4718
113 Ga0453684_0001324 3300044712 Bacteria 73175
114 Ga0453684_0011012 3300044712 Bacteria 15279
115 Ga0453684_0286253 3300044712 Bacteria 1878
116 Ga0466957_0007111 3300044842 Bacteria 6330
117 Ga0466957_0039239 3300044842 Bacteria 2856
118 Ga0451576_0243107 3300045051 Bacteria 1880
119 Ga0495638_0000008 3300046460 Bacteria 565643
120 Ga0495632_0173149 3300046519 Bacteria 991
121 Ga0495648_0068536 3300046524 Bacteria 2069
122 Ga0495668_0000112 3300046616 Bacteria 128501
123 Ga0495661_0014316 3300046665 Bacteria 5316
124 Ga0495686_0045780 3300047472 Bacteria 2768
125 Ga0496123_0004827 3300048926 Bacteria 13903
126 Ga0501034_0013875 3300049571 Bacteria 8295
127 Ga0501047_0393520 3300049581 Unclassified 1219
128 Ga0501238_000334 3300049671 Bacteria 6113
129 Ga0501238_001796 3300049671 Bacteria 2502
130 Ga0501247_002826 3300049677 Bacteria 1827
131 Ga0501249_001318 3300049679 Bacteria 5165
132 Ga0501249_014856 3300049679 Unclassified 1661
133 Ga0501257_035829 3300049686 Unclassified 1207
134 Ga0501264_000134 3300049761 Bacteria 11620
135 Ga0501266_000016 3300049763 Bacteria 164181
136 Ga0501280_001301 3300049776 Bacteria 4778
137 nmdc:mga0k408_92620_c1 3300050493 Bacteria 1776
138 Ga0500644_0013149 3300053088 Bacteria 2306
139 Ga0500646_0023728 3300053090 Bacteria 1647
140 Ga0500583_0000048 3300053092 Bacteria 78503
141 Ga0500583_0001422 3300053092 Bacteria 6860
142 Ga0500556_0098953 3300053104 Bacteria 1121
143 Ga0500569_002524 3300053109 Unclassified 3621
144 Ga0500658_0028665 3300053134 Unclassified 2162
145 Ga0500658_0243538 3300053134 Unclassified 826
146 Ga0500559_0014881 3300053136 Bacteria 3287
147 Ga0500577_0017147 3300053142 Bacteria 2300
148 Ga0500604_0001966 3300053151 Bacteria 5706
149 Ga0500616_0000003 3300053153 Bacteria 1220687
150 Ga0500627_0061845 3300053158 Bacteria 1648
151 Ga0500633_0084397 3300053160 Unclassified 1153
152 Ga0500611_000090 3300053727 Bacteria 26074
153 2738758522 2738541283 Bacteria 7222293
154 2819679576 2818991460 Bacteria 7595395
155 2857617690 2857613821 Bacteria 4917088
156 2896111569 2896109856 Bacteria 7140722
157 2904557860 2904555929 Bacteria 5218588
158 2929180410 2929177148 Bacteria 7883697
159 2929245133 2929239360 Bacteria 7745570
160 2945982803 2945977869 Bacteria 7777518
161 2946017804 2946013367 Bacteria 7766675
162 Ga0209050_1002398
163 JGI25158J39367_1012198
164 JGI25153J46596_10034093
165 rootL2_10011536
166 rootL2_10077340
167 rootL2_10119806
168 rootL2_10205891
169 rootL2_10227036
170 JGI25160J50197_1000925
171 JGI25160J50197_1013995
172 Ga0055542_1007150
173 Ga0055526_1010384
174 Ga0055528_1000447
175 Ga0055530_10009769
176 Ga0055530_10023170
177 Ga0065165_1000012
178 Ga0065704_10074738
179 Ga0070666_10092930
180 Ga0070682_100421708
181 Ga0068853_100002429
182 Ga0068853_100017026
183 Ga0068853_100030061
184 Ga0068856_100322408
185 Ga0068859_100265561
186 Ga0068864_100115468
187 Ga0068860_100014042
188 Ga0068862_100039406
189 Ga0097621_100033594
190 Ga0097620_100265555
191 Ga0105240_10000242
192 Ga0105240_10000339
193 Ga0105240_10062799
194 Ga0105240_10170408
195 Ga0105240_10212410
196 Ga0105245_10322113
197 Ga0114129_10007582
198 Ga0105237_10007266
199 Ga0105237_10012929
200 Ga0105238_10071522
201 Ga0105249_10061705
202 Ga0105239_10001445
203 Ga0105239_10032390
204 Ga0105239_10497363
205 Ga0157371_10099874
206 Ga0157370_10000483
207 Ga0157370_10006807
208 Ga0157370_10037625
209 Ga0163162_10008511
210 Ga0157372_10372737
211 Ga0182008_10039465
212 Ga0157376_10379046
213 Ga0182006_1000643
214 Ga0182006_1019121
215 Ga0163161_10006365
216 Ga0163161_10140788
217 Ga0209436_100969
218 Ga0209258_100278
219 Ga0209148_1000248
220 Ga0209673_1000446
221 Ga0209673_1015728
222 Ga0209130_1001912
223 Ga0209564_1001170
224 Ga0209564_1002721
225 Ga0209758_1001411
226 Ga0209758_1002522
227 Ga0209050_1001619
228 Ga0209050_1015891
229 Ga0207426_1000288
230 Ga0207426_1000754
231 Ga0207426_1006625
232 Ga0209051_1009598
233 Ga0209257_1000686
234 Ga0207680_10097707
235 Ga0207695_10000066
236 Ga0207695_10000469
237 Ga0207695_10081665
238 Ga0207671_10036945
239 Ga0207671_10133010
240 Ga0207669_10390236
241 Ga0207639_10014430
242 Ga0207639_10015016
243 Ga0207639_10137192
244 Ga0207702_10284437
245 Ga0207676_10214997
246 Ga0268265_10030022
247 Ga0268264_10061175
248 Ga0307515_10000135
249 Ga0307515_10102161
250 Ga0307511_10000387
251 Ga0316179_1098529
252 Ga0307509_10067153
253 Ga0307408_100001565
254 Ga0307408_100001580
255 Ga0307408_100005122
256 Ga0307508_10001251
257 Ga0307514_10065754
258 Ga0307405_10000001
259 Ga0307413_10002025
260 Ga0307413_10075178
261 Ga0307518_10096481
262 Ga0307410_10013903
263 Ga0307406_10000042
264 Ga0307407_10004183
265 Ga0307412_10000519
266 Ga0307414_10000022
267 Ga0307414_10000574
268 Ga0307414_10001002
269 Ga0307414_10025529
270 Ga0307411_10000001
271 Ga0439466_0000804
272 Ga0451851_0405561
273 Ga0466965_0008619
274 Ga0453684_0001324
275 Ga0453684_0011012
276 Ga0453684_0286253
277 Ga0466957_0007111
278 Ga0466957_0039239
279 Ga0451576_0243107
280 Ga0495638_0000008
281 Ga0495632_0173149
282 Ga0495648_0068536
283 Ga0495668_0000112
284 Ga0495661_0014316
285 Ga0495686_0045780
286 Ga0496123_0004827
287 Ga0501034_0013875
288 Ga0501047_0393520
289 Ga0501238_000334
290 Ga0501238_001796
291 Ga0501247_002826
292 Ga0501249_001318
293 Ga0501249_014856
294 Ga0501257_035829
295 Ga0501264_000134
296 Ga0501266_000016
297 Ga0501280_001301
298 nmdc:mga0k408_92620_c1
299 Ga0500644_0013149
300 Ga0500646_0023728
301 Ga0500583_0000048
302 Ga0500583_0001422
303 Ga0500556_0098953
304 Ga0500569_002524
305 Ga0500658_0028665
306 Ga0500658_0243538
307 Ga0500559_0014881
308 Ga0500577_0017147
309 Ga0500604_0001966
310 Ga0500616_0000003
311 Ga0500627_0061845
312 Ga0500633_0084397
313 Ga0500611_000090
314 2738758522
315 2819679576
316 2857617690
317 2896111569
318 2904557860
319 2929180410
320 2929245133
321 2945982803
322 2946017804

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12833

HTH_18

Helix-turn-helix domain

234

313

0.98

PF02311

AraC_binding

AraC-like ligand binding domain

62

142

0.94

PF00165

HTH_AraC

Bacterial regulatory helix-turn-helix proteins, AraC family

273

312

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
3lsg-assembly1.cif.gz_A the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.8997 182 281
1bl0-assembly1.cif.gz_A multiple antibiotic resistance protein (mara)/dna complex 0.8933 183 281
3lsg-assembly3.cif.gz_E the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.8786 182 276
5fq0-assembly2.cif.gz_D the structure of kdgf from halomonas sp. 0.8729 36 96
3lsg-assembly2.cif.gz_D the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.8697 182 272
ID Description Score Start End Superfamily
3lsgA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9759 239 281 1.10.10.60
1d5yD02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9477 235 282 1.10.10.60
af_P32677_219_275_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9467 233 284 1.10.10.60
1bl0A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9414 238 281 1.10.10.60
3lsgB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9392 238 281 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A1B7JQD5-F1-model_v4 AraC family transcriptional regulator 0.9635 184 285 GO:0003700
GO:0043565
AF-A0A1W6LKE3-F1-model_v4 Xylose operon regulatory protein 0.959 182 283 GO:0000976
GO:0003700
AF-A0A0P0M2X7-F1-model_v4 Transcriptional regulator, AraC family 0.9516 180 283 GO:0003700
GO:0043565
AF-A0A1B7JQD5-F1-model_v4 AraC family transcriptional regulator 0.9455 184 285 GO:0003700
GO:0043565
AF-A0A497RNU0-F1-model_v4 Transcriptional regulator 0.9393 183 285 GO:0000976
GO:0003700

Map