F237255

General Info

Members Datasets Scaffolds Average Seq Length
161 120 151 359

Family's Representative Sequence

Representative Sequence 3300028794|Ga0307515_10000080|Ga0307515_10000080106
Length 378
Sequence MPGPPAPRHGASTRTPRNNVSNGPTAVSIAGPRTTQSMRYVLIGDAESPHLLKWARALAAVPGIELWAASSRGFAEGFDAVLPPEHRLALATAPDAAGGNVALLRQLPRLARWLRQVDAAWIHAHYLTSHGTLAWLAQRLYGVRGRLVGSAWGSDILVTPLRSALVRHTTRRVLRACALTTSDSQVMAARMRELGAGEVMVFPFGLEAMPPAPPAKADGLFFANRGLEPIYAPERVLQAFADVPWPGKQLVVANDGSLRTALEGAAPAATRFVGRLDAMAQASWYLSLPRSDSVAVSVLEAMAQGCIPILSDLPANRELVRDGDNGIVLHNGEALRAERLQPLLARADAIAADNRAWVEAHALFTPCVQRFIDRLQSL

Samples

Sample ID Description Type Environment
1 2588253510 Rhizobacter sp. OV335 Isolate Rhizosphere
2 2643221585 Pelomonas sp. Root662 Isolate Unclassified
3 2643221592 Rhizobacter sp. Root16D2 Isolate Unclassified
4 2643221625 Rhizobacter sp. Root29 Isolate Unclassified
5 2643221644 Rhizobacter sp. Root1221 Isolate Unclassified
6 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
7 2643221648 Rhizobacter sp. Root1238 Isolate Unclassified
8 2643221656 Pelomonas sp. Root405 Isolate Unclassified
9 2831864461 Roseateles noduli HZ7 Isolate Nodule
10 2886848708 Mitsuaria sp. TWR114 Isolate Rhizosphere
11 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
12 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
13 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
14 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
15 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
16 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
17 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
18 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
19 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
20 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
21 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
22 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
23 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
24 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
25 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
26 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
27 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
28 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
29 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
30 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
31 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
32 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
33 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
34 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
35 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
36 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
37 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
38 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
39 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
40 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300012497 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 Metagenome Rhizosphere
42 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
43 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
44 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
45 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
50 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
52 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
69 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
70 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
73 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
74 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
75 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
76 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
77 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
78 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
79 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
80 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
81 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
82 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
83 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
84 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
85 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
86 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
87 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
88 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
89 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
90 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
91 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
92 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
93 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
94 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
95 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
96 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
97 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
98 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
99 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
100 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
101 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
102 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
103 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
104 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
105 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
106 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
107 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
108 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
109 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
110 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
111 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
112 3300049670 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought Metagenome Rhizosphere
113 3300049683 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_B_3_control Metagenome Rhizosphere
114 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
115 3300049764 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J12_A_4_control Metagenome Rhizosphere
116 3300049769 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_B_4_drought Metagenome Rhizosphere
117 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
118 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
119 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
120 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.79
Metatranscriptomes 0
Isolates 6.21

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 24.84
Nodule 3.11
Rhizoplane 1.24
Rhizosphere 54.66
Stem 0
Stem Tuber 0
Unclassified 16.15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10011448 3300003316 Bacteria 8212
2 rootL2_10008196 3300003322 Bacteria 21345
3 rootL2_10051635 3300003322 Bacteria 3876
4 rootH1_10003433 3300003323 Bacteria 7646
5 rootH1_10009481 3300003323 Bacteria 8145
6 rootH1_10046795 3300003323 Bacteria 3658
7 Ga0055539_1000224 3300003752 Bacteria 40014
8 Ga0055533_1000033 3300003756 Bacteria 265716
9 Ga0055525_1000727 3300003759 Bacteria 11504
10 Ga0055535_1001358 3300003761 Bacteria 12864
11 Ga0055529_1000218 3300003763 Bacteria 74813
12 Ga0055529_1000338 3300003763 Bacteria 52417
13 Ga0055524_1000437 3300003775 Bacteria 34910
14 Ga0055530_10003721 3300003791 Bacteria 8475
15 Ga0055540_1000001 3300003792 Bacteria 466834
16 Ga0055540_1022974 3300003792 Bacteria 1581
17 Ga0055531_10005945 3300003794 Bacteria 7015
18 Ga0055531_10016241 3300003794 Bacteria 3223
19 Ga0065165_1000016 3300005262 Bacteria 286248
20 Ga0065165_1000295 3300005262 Bacteria 84323
21 Ga0065165_1002976 3300005262 Bacteria 12860
22 Ga0065707_10085926 3300005295 Bacteria 5787
23 Ga0070658_10200014 3300005327 Bacteria 1685
24 Ga0070670_100036960 3300005331 Bacteria 4201
25 Ga0070660_100008473 3300005339 Bacteria 7194
26 Ga0070660_100030441 3300005339 Bacteria 4050
27 Ga0070661_100004710 3300005344 Bacteria 9392
28 Ga0070668_100143291 3300005347 Bacteria 1927
29 Ga0070675_100022260 3300005354 Bacteria 5062
30 Ga0070673_100047645 3300005364 Bacteria 3336
31 Ga0070659_100000260 3300005366 Bacteria 41588
32 Ga0070708_100159136 3300005445 Bacteria 2104
33 Ga0070672_100024288 3300005543 Bacteria 4477
34 Ga0070664_100024400 3300005564 Bacteria 5000
35 Ga0068860_100071639 3300005843 Bacteria 3293
36 Ga0068862_100050665 3300005844 Bacteria 3549
37 Ga0099823_1033931 3300006944 Bacteria 4069
38 Ga0079104_1000001 3300006946 Bacteria 521847
39 Ga0114129_10036818 3300009147 Bacteria 6909
40 Ga0157319_1000027 3300012497 Bacteria 62955
41 Ga0157376_10248871 3300014969 Bacteria 1659
42 Ga0182007_10035364 3300015262 Bacteria 1683
43 Ga0213872_10000341 3300021361 Bacteria 39538
44 Ga0213872_10036050 3300021361 Bacteria 2260
45 Ga0213872_10039778 3300021361 Bacteria 2146
46 Ga0209674_100064 3300025226 Bacteria 265769
47 Ga0209563_100126 3300025230 Bacteria 113122
48 Ga0209258_100262 3300025242 Bacteria 90619
49 Ga0209677_100099 3300025253 Bacteria 92370
50 Ga0209759_1004923 3300025256 Bacteria 4831
51 Ga0209759_1011707 3300025256 Bacteria 2474
52 Ga0209455_1000191 3300025272 Bacteria 90618
53 Ga0209673_1013281 3300025273 Bacteria 3260
54 Ga0209673_1014598 3300025273 Bacteria 3032
55 Ga0209564_1000008 3300025295 Bacteria 953227
56 Ga0209050_1000118 3300025298 Bacteria 202586
57 Ga0209050_1001003 3300025298 Bacteria 35399
58 Ga0209050_1015015 3300025298 Bacteria 3287
59 Ga0209050_1016660 3300025298 Bacteria 2989
60 Ga0209256_1000015 3300025299 Bacteria 622953
61 Ga0209256_1000424 3300025299 Bacteria 66333
62 Ga0209256_1001350 3300025299 Bacteria 25984
63 Ga0209051_1000018 3300025303 Bacteria 527061
64 Ga0209051_1000469 3300025303 Bacteria 52936
65 Ga0209257_1000021 3300025304 Bacteria 771986
66 Ga0209257_1000324 3300025304 Bacteria 100144
67 Ga0209257_1000946 3300025304 Bacteria 40063
68 Ga0209257_1001641 3300025304 Bacteria 25564
69 Ga0207705_10042284 3300025909 Bacteria 3272
70 Ga0207705_10094008 3300025909 Bacteria 2198
71 Ga0207657_10016064 3300025919 Bacteria 7226
72 Ga0207657_10210460 3300025919 Bacteria 1561
73 Ga0207649_10000519 3300025920 Bacteria 27003
74 Ga0207650_10059789 3300025925 Bacteria 2842
75 Ga0207659_10002872 3300025926 Bacteria 10254
76 Ga0207690_10000906 3300025932 Bacteria 18937
77 Ga0207691_10003158 3300025940 Bacteria 16114
78 Ga0207679_10000047 3300025945 Bacteria 119891
79 Ga0207679_10040026 3300025945 Bacteria 3352
80 Ga0207651_10031408 3300025960 Bacteria 3395
81 Ga0207678_10379429 3300026067 Bacteria 1222
82 Ga0207648_10047114 3300026089 Bacteria 3779
83 Ga0209281_1000151 3300027111 Bacteria 167268
84 Ga0209389_1035144 3300027296 Bacteria 4074
85 Ga0209371_1012678 3300027312 Bacteria 2420
86 Ga0268264_10056079 3300028381 Bacteria 3293
87 Ga0265336_10000121 3300028666 Bacteria 58209
88 Ga0307517_10047855 3300028786 Bacteria 4419
89 Ga0307515_10000080 3300028794 Bacteria 224941
90 Ga0307515_10000180 3300028794 Bacteria 156173
91 Ga0307515_10023458 3300028794 Bacteria 10809
92 Ga0307515_10104520 3300028794 Bacteria 3382
93 Ga0265324_10000630 3300029957 Bacteria 24053
94 Ga0268256_1013948 3300030500 Bacteria 2409
95 Ga0307513_10033801 3300031456 Bacteria 5744
96 Ga0307408_100015509 3300031548 Bacteria 5074
97 Ga0307514_10003246 3300031649 Bacteria 15882
98 Ga0307516_10000127 3300031730 Bacteria 90180
99 Ga0307516_10000438 3300031730 Bacteria 54750
100 Ga0307410_10028084 3300031852 Bacteria 3565
101 Ga0373931_0006251 3300035691 Bacteria 5555
102 Ga0373937_0285863 3300036401 Bacteria 1558
103 Ga0395900_0000050 3300037418 Bacteria 224616
104 Ga0395898_0000886 3300037466 Bacteria 48827
105 Ga0395905_0005071 3300037471 Bacteria 13554
106 Ga0395905_0018026 3300037471 Bacteria 6703
107 Ga0436361_0197147 3300039447 Bacteria 66813
108 Ga0436361_0234675 3300039447 Bacteria 4128
109 Ga0436361_0275113 3300039447 Bacteria 1774
110 Ga0436361_0307292 3300039447 Bacteria 5150
111 Ga0436361_0317443 3300039447 Bacteria 34290
112 Ga0436361_0828858 3300039447 Bacteria 4506
113 Ga0451577_0010832 3300042876 Bacteria 8668
114 Ga0466969_0000008 3300044656 Bacteria 139607
115 Ga0466972_0089360 3300044658 Bacteria 1462
116 Ga0466965_0082604 3300044683 Bacteria 1625
117 Ga0466966_0016586 3300044684 Bacteria 4864
118 Ga0466966_0028467 3300044684 Bacteria 3639
119 Ga0466961_0018793 3300044693 Bacteria 4446
120 Ga0466961_0031380 3300044693 Bacteria 3415
121 Ga0466963_0038544 3300044694 Bacteria 3125
122 Ga0466964_0001448 3300044706 Bacteria 8114
123 Ga0466964_0016551 3300044706 Bacteria 2817
124 Ga0453684_0099141 3300044712 Bacteria 3570
125 Ga0466970_0012346 3300044765 Bacteria 4366
126 Ga0466970_0029322 3300044765 Bacteria 2896
127 Ga0466970_0061299 3300044765 Bacteria 2015
128 Ga0466957_0168940 3300044842 Bacteria 1424
129 Ga0466959_0000104 3300045049 Bacteria 54360
130 Ga0466959_0003963 3300045049 Bacteria 9837
131 Ga0451576_0035185 3300045051 Bacteria 5315
132 Ga0466958_0066415 3300045836 Bacteria 2202
133 Ga0495583_0000046 3300046506 Bacteria 218059
134 Ga0495606_0010653 3300046507 Bacteria 7603
135 Ga0495668_0057741 3300046616 Bacteria 2142
136 Ga0495625_0003828 3300046660 Bacteria 14560
137 Ga0495670_0021815 3300046691 Bacteria 3161
138 Ga0495649_0000838 3300046694 Bacteria 24686
139 Ga0496102_0003049 3300048905 Bacteria 14192
140 Ga0496114_0006205 3300048917 Bacteria 9413
141 Ga0496121_0017886 3300048924 Bacteria 7193
142 Ga0496124_0005447 3300048927 Bacteria 14312
143 Ga0501236_009737 3300049670 Bacteria 1245
144 Ga0501253_001484 3300049683 Bacteria 2407
145 Ga0501221_002994 3300049704 Bacteria 2785
146 Ga0501267_000602 3300049764 Bacteria 2854
147 Ga0501272_000842 3300049769 Bacteria 2795
148 nmdc:mga0k408_61867_c1 3300050493 Bacteria 2176
149 Ga0500635_0000005 3300053080 Bacteria 187821
150 Ga0500578_0000079 3300053086 Bacteria 107137
151 Ga0500622_0003650 3300053156 Bacteria 10118

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300026067 Ga0207678_10379429 Ga0207678_103794292 284
2 3300039447 Ga0436361_0307292 Ga0436361_0307292_4199_5128 304
3 3300025298 Ga0209050_1000118 Ga0209050_100011861 319
4 3300005262 Ga0065165_1002976 Ga0065165_10029766 320
5 3300053086 Ga0500578_0000079 Ga0500578_0000079_68635_69723 320
6 3300044706 Ga0466964_0001448 Ga0466964_0001448_6141_7238 331
7 3300044765 Ga0466970_0012346 Ga0466970_0012346_1035_2132 331
8 3300045049 Ga0466959_0003963 Ga0466959_0003963_2805_3902 331
9 3300045836 Ga0466958_0066415 Ga0466958_0066415_305_1402 331
10 3300003752 Ga0055539_1000224 Ga0055539_10002247 332
11 3300003756 Ga0055533_1000033 Ga0055533_1000033101 332
12 3300003759 Ga0055525_1000727 Ga0055525_100072711 332
13 3300025226 Ga0209674_100064 Ga0209674_100064148 332
14 3300025230 Ga0209563_100126 Ga0209563_1001267 332
15 3300025253 Ga0209677_100099 Ga0209677_10009913 332
16 3300015262 Ga0182007_10035364 Ga0182007_100353642 339
17 3300028794 Ga0307515_10000080 Ga0307515_10000080106 341
18 3300046506 Ga0495583_0000046 Ga0495583_0000046_106448_107560 342
19 3300046507 Ga0495606_0010653 Ga0495606_0010653_3234_4346 342
20 3300046616 Ga0495668_0057741 Ga0495668_0057741_947_2059 342
21 3300046660 Ga0495625_0003828 Ga0495625_0003828_11989_13101 342
22 3300046694 Ga0495649_0000838 Ga0495649_0000838_15176_16288 342
23 3300005339 Ga0070660_100008473 Ga0070660_1000084736 344
24 3300025919 Ga0207657_10016064 Ga0207657_100160646 344
25 3300005339 Ga0070660_100030441 Ga0070660_1000304414 347
26 3300005344 Ga0070661_100004710 Ga0070661_1000047107 347
27 3300005366 Ga0070659_100000260 Ga0070659_10000026023 347
28 3300009147 Ga0114129_10036818 Ga0114129_100368184 347
29 3300025919 Ga0207657_10210460 Ga0207657_102104602 347
30 3300025920 Ga0207649_10000519 Ga0207649_100005197 347
31 3300025932 Ga0207690_10000906 Ga0207690_100009062 347
32 3300025945 Ga0207679_10000047 Ga0207679_1000004794 347
33 3300028794 Ga0307515_10000180 Ga0307515_10000180124 347
34 3300028794 Ga0307515_10104520 Ga0307515_101045204 347
35 3300031456 Ga0307513_10033801 Ga0307513_100338014 347
36 3300005445 Ga0070708_100159136 Ga0070708_1001591363 348
37 3300035691 Ga0373931_0006251 Ga0373931_0006251_253_1308 348
38 3300039447 Ga0436361_0275113 Ga0436361_0275113_363_1454 348
39 iso_pu_bacteria 2643221644 2644246572 348
40 3300003323 rootH1_10046795 rootH1_100467954 349
41 3300005347 Ga0070668_100143291 Ga0070668_1001432912 349
42 3300005354 Ga0070675_100022260 Ga0070675_1000222602 349
43 3300005364 Ga0070673_100047645 Ga0070673_1000476452 349
44 3300005543 Ga0070672_100024288 Ga0070672_1000242884 349
45 3300014969 Ga0157376_10248871 Ga0157376_102488712 349
46 3300025298 Ga0209050_1015015 Ga0209050_10150153 349
47 3300025304 Ga0209257_1000021 Ga0209257_100002120 349
48 3300025926 Ga0207659_10002872 Ga0207659_100028725 349
49 3300025960 Ga0207651_10031408 Ga0207651_100314082 349
50 3300026089 Ga0207648_10047114 Ga0207648_100471142 349
51 3300037471 Ga0395905_0005071 Ga0395905_0005071_3907_4965 349
52 3300049670 Ga0501236_009737 Ga0501236_009737_46_1122 349
53 3300049683 Ga0501253_001484 Ga0501253_001484_542_1618 349
54 3300049704 Ga0501221_002994 Ga0501221_002994_584_1660 349
55 3300049764 Ga0501267_000602 Ga0501267_000602_497_1573 349
56 3300049769 Ga0501272_000842 Ga0501272_000842_1187_2263 349
57 3300050493 nmdc:mga0k408_61867_c1 nmdc:mga0k408_61867_c1_553_1629 349
58 iso_pu_bacteria 2643221585 2643937386 349
59 iso_pu_bacteria 2643221646 2644260776 349
60 iso_pu_bacteria 2643221656 2644318551 349
61 3300039447 Ga0436361_0197147 Ga0436361_0197147_29840_30895 350
62 iso_pu_bacteria 2588253510 2588289887 350
63 iso_pu_bacteria 2643221592 2643972314 350
64 iso_pu_bacteria 2643221625 2644141575 350
65 iso_pu_bacteria 2643221648 2644275654 350
66 3300005843 Ga0068860_100071639 Ga0068860_1000716393 351
67 3300028381 Ga0268264_10056079 Ga0268264_100560792 351
68 3300044656 Ga0466969_0000008 Ga0466969_0000008_85319_86377 351
69 3300044684 Ga0466966_0016586 Ga0466966_0016586_1960_3018 351
70 3300044693 Ga0466961_0031380 Ga0466961_0031380_767_1837 351
71 3300044765 Ga0466970_0061299 Ga0466970_0061299_744_1802 351
72 3300044842 Ga0466957_0168940 Ga0466957_0168940_88_1158 351
73 3300048924 Ga0496121_0017886 Ga0496121_0017886_5427_6497 351
74 3300003322 rootL2_10051635 rootL2_100516352 352
75 3300003323 rootH1_10003433 rootH1_100034335 352
76 3300003761 Ga0055535_1001358 Ga0055535_10013589 352
77 3300003763 Ga0055529_1000218 Ga0055529_10002183 352
78 3300003763 Ga0055529_1000338 Ga0055529_100033837 352
79 3300003791 Ga0055530_10003721 Ga0055530_100037213 352
80 3300003792 Ga0055540_1000001 Ga0055540_1000001367 352
81 3300003794 Ga0055531_10005945 Ga0055531_100059453 352
82 3300005295 Ga0065707_10085926 Ga0065707_100859262 352
83 3300005327 Ga0070658_10200014 Ga0070658_102000142 352
84 3300005564 Ga0070664_100024400 Ga0070664_1000244002 352
85 3300006946 Ga0079104_1000001 Ga0079104_1000001400 352
86 3300021361 Ga0213872_10000341 Ga0213872_1000034123 352
87 3300021361 Ga0213872_10039778 Ga0213872_100397782 352
88 3300025242 Ga0209258_100262 Ga0209258_10026279 352
89 3300025256 Ga0209759_1004923 Ga0209759_10049234 352
90 3300025256 Ga0209759_1011707 Ga0209759_10117073 352
91 3300025272 Ga0209455_1000191 Ga0209455_100019179 352
92 3300025298 Ga0209050_1001003 Ga0209050_100100329 352
93 3300025298 Ga0209050_1016660 Ga0209050_10166603 352
94 3300025299 Ga0209256_1000015 Ga0209256_1000015488 352
95 3300025303 Ga0209051_1000018 Ga0209051_100001887 352
96 3300025304 Ga0209257_1000324 Ga0209257_100032487 352
97 3300025909 Ga0207705_10042284 Ga0207705_100422842 352
98 3300025909 Ga0207705_10094008 Ga0207705_100940082 352
99 3300025945 Ga0207679_10040026 Ga0207679_100400264 352
100 3300027111 Ga0209281_1000151 Ga0209281_100015183 352
101 3300028666 Ga0265336_10000121 Ga0265336_1000012148 352
102 3300028786 Ga0307517_10047855 Ga0307517_100478553 352
103 3300028794 Ga0307515_10023458 Ga0307515_100234587 352
104 3300029957 Ga0265324_10000630 Ga0265324_100006302 352
105 3300031730 Ga0307516_10000127 Ga0307516_1000012734 352
106 3300031730 Ga0307516_10000438 Ga0307516_1000043822 352
107 3300037418 Ga0395900_0000050 Ga0395900_0000050_20600_21658 352
108 3300037466 Ga0395898_0000886 Ga0395898_0000886_9892_10950 352
109 3300037471 Ga0395905_0018026 Ga0395905_0018026_5297_6355 352
110 3300039447 Ga0436361_0234675 Ga0436361_0234675_155_1270 352
111 3300039447 Ga0436361_0828858 Ga0436361_0828858_1004_2122 352
112 3300042876 Ga0451577_0010832 Ga0451577_0010832_3235_4299 352
113 3300044658 Ga0466972_0089360 Ga0466972_0089360_23_1093 352
114 3300044683 Ga0466965_0082604 Ga0466965_0082604_187_1257 352
115 3300044684 Ga0466966_0028467 Ga0466966_0028467_1416_2474 352
116 3300044693 Ga0466961_0018793 Ga0466961_0018793_2050_3108 352
117 3300044694 Ga0466963_0038544 Ga0466963_0038544_1574_2632 352
118 3300044706 Ga0466964_0016551 Ga0466964_0016551_191_1249 352
119 3300044712 Ga0453684_0099141 Ga0453684_0099141_141_1208 352
120 3300044765 Ga0466970_0029322 Ga0466970_0029322_1405_2463 352
121 3300045049 Ga0466959_0000104 Ga0466959_0000104_24763_25821 352
122 3300045051 Ga0451576_0035185 Ga0451576_0035185_2126_3205 352
123 3300048905 Ga0496102_0003049 Ga0496102_0003049_1739_2806 352
124 3300048917 Ga0496114_0006205 Ga0496114_0006205_2894_3961 352
125 3300053080 Ga0500635_0000005 Ga0500635_0000005_173824_174942 352
126 3300031852 Ga0307410_10028084 Ga0307410_100280843 353
127 3300036401 Ga0373937_0285863 Ga0373937_0285863_105_1202 353
128 3300005331 Ga0070670_100036960 Ga0070670_1000369604 354
129 3300005844 Ga0068862_100050665 Ga0068862_1000506654 354
130 3300025925 Ga0207650_10059789 Ga0207650_100597892 354
131 3300025940 Ga0207691_10003158 Ga0207691_1000315814 354
132 3300031649 Ga0307514_10003246 Ga0307514_100032466 354
133 3300021361 Ga0213872_10036050 Ga0213872_100360502 355
134 3300039447 Ga0436361_0317443 Ga0436361_0317443_628_1695 355
135 3300005262 Ga0065165_1000295 Ga0065165_100029556 356
136 iso_pu_bacteria 2831864461 2831869351 374
137 iso_pu_bacteria 2886848708 2886851200 374
138 3300003316 rootH1_10011448 rootH1_100114489 378
139 3300003322 rootL2_10008196 rootL2_100081966 378
140 3300003323 rootH1_10009481 rootH1_100094814 378
141 3300003775 Ga0055524_1000437 Ga0055524_10004375 378
142 3300003792 Ga0055540_1022974 Ga0055540_10229741 378
143 3300003794 Ga0055531_10016241 Ga0055531_100162412 378
144 3300005262 Ga0065165_1000016 Ga0065165_1000016123 378
145 3300006944 Ga0099823_1033931 Ga0099823_10339312 378
146 3300012497 Ga0157319_1000027 Ga0157319_100002718 378
147 3300025273 Ga0209673_1013281 Ga0209673_10132812 378
148 3300025273 Ga0209673_1014598 Ga0209673_10145983 378
149 3300025295 Ga0209564_1000008 Ga0209564_1000008416 378
150 3300025299 Ga0209256_1000424 Ga0209256_100042420 378
151 3300025299 Ga0209256_1001350 Ga0209256_10013505 378
152 3300025303 Ga0209051_1000469 Ga0209051_100046941 378
153 3300025304 Ga0209257_1000946 Ga0209257_10009466 378
154 3300025304 Ga0209257_1001641 Ga0209257_10016416 378
155 3300027296 Ga0209389_1035144 Ga0209389_10351444 378
156 3300027312 Ga0209371_1012678 Ga0209371_10126782 378
157 3300030500 Ga0268256_1013948 Ga0268256_10139482 378
158 3300031548 Ga0307408_100015509 Ga0307408_1000155092 378
159 3300046691 Ga0495670_0021815 Ga0495670_0021815_447_1595 378
160 3300048927 Ga0496124_0005447 Ga0496124_0005447_300_1436 378
161 3300053156 Ga0500622_0003650 Ga0500622_0003650_774_1922 378

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13477

Glyco_trans_4_2

Glycosyl transferase 4-like

40

184

0.77

PF13692

Glyco_trans_1_4

Glycosyl transferases group 1

219

346

0.75

PF00534

Glycos_transf_1

Glycosyl transferases group 1

214

349

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
3qhp-assembly1.cif.gz_A crystal structure of the catalytic domain of cholesterol-alpha-glucosyltransferase from helicobacter pylori 0.8527 180 360
3qhp-assembly2.cif.gz_B crystal structure of the catalytic domain of cholesterol-alpha-glucosyltransferase from helicobacter pylori 0.841 181 361
3qhp-assembly1.cif.gz_A crystal structure of the catalytic domain of cholesterol-alpha-glucosyltransferase from helicobacter pylori 0.8379 180 360
3qhp-assembly2.cif.gz_B crystal structure of the catalytic domain of cholesterol-alpha-glucosyltransferase from helicobacter pylori 0.836 181 361
5d01-assembly1.cif.gz_B crystal structure of bsha from b. subtilis complexed with n-acetylglucosaminyl-malate 0.8097 1 377
ID Description Score Start End Superfamily
af_Q2G0L2_318_480_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8661 183 361 3.40.50.2000
5d00A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.866 178 359 3.40.50.2000
af_Q84QB1_230_385_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8594 183 356 3.40.50.2000
af_P9WMY5_198_350_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8557 183 356 3.40.50.2000
af_P96407_190_356_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8557 176 357 3.40.50.2000
ID Description Score Start End GO Terms
AF-A0A2H9PIZ1-F1-model_v4 Glycosyl transferase family 1 domain-containing protein 0.8948 190 376 GO:0016757
AF-A0A7V9K551-F1-model_v4 Glycosyltransferase 0.8847 86 377 GO:0009058
GO:0016757
AF-A0A2H9PIZ1-F1-model_v4 Glycosyl transferase family 1 domain-containing protein 0.8845 190 376 GO:0016757
AF-A0A5C8AL26-F1-model_v4 Glycosyltransferase 0.8804 1 377 GO:0016740
AF-A0A418XE63-F1-model_v4 Glycosyltransferase 0.879 179 299 GO:0016757

Feature Viewer

pLDDT pTM Quality
88.34 0.85 High
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Predicted Structure (AlphaFold2)

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