F237265

General Info

Members Datasets Scaffolds Average Seq Length
161 125 322 500

Family's Representative Sequence

Representative Sequence 3300028800|Ga0265338_10129707|Ga0265338_101297072
Length 532
Sequence MNAAGFPLLSLITWLPLVGGVVIMSVRGDQATIDSNARWTWFEFDPGEAGFQFVEQVPWLAEYGVGYKMGVDGISVLFVLLSTVLTPICILASWESITRNVREFMLSFLILETMMVGMFCALDFVVFYMFFEGVLIPMYLIIGIWGGPRRVYAAVKFFLYTLTGSVLMLLALLAMWFQAGTTDIPTLMHTHFPVAMQGWLFFAFLASFAVKVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGAYGFLRFSVPMLPEASQHYAPLIYTLSVVAVIYTSLVALAQEDMKKLIAYSSVAHMGVVTIGIFTFNVQGIQGALFQMLSHGIVSGALFLIVGVVYDRIHSREIARYGGLADRMPSYALTFMVFMMASVGLPGTSGFVGEFLVIIGSFQVSFWLALLGGMGMILGAAYMLYLYRRVIFGRLTRQDLRNIVDLSPREWAVFAPLIVITLWMGVYPSSFSGFWDASVAAMVKQHTAALAVPANNMAAAANPSVPPVMVGEGRPSTTLMRAALQGVDGGPAPSMTSEGTRL

Samples

Sample ID Description Type Environment
1 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
4 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
5 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
14 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
15 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
16 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
21 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
22 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
23 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
24 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
25 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
26 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
27 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
28 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
29 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
30 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
31 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
32 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
33 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
35 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300027378 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
46 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
47 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
48 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
49 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
50 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
51 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
52 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
53 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
54 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
55 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
56 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
57 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
58 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
59 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
60 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
61 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
62 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
63 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
64 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
65 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
66 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
67 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
68 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
69 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
70 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
71 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
72 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
73 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
74 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
75 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
76 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
77 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
78 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
79 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
80 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
81 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
90 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
91 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
92 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
93 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
94 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
95 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
96 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
98 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
99 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
100 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
101 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
102 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
103 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
104 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
105 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
106 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
107 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
108 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
109 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
110 3300053731 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere Metagenome Endosphere
111 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
112 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
113 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
114 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
115 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
116 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
117 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
118 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
119 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
120 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
121 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
122 2897803580 Azospirillum doebereinerae GSF71 Isolate Unclassified
123 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
124 8054002106 Azospirillum lipoferum 59b Isolate Unclassified
125 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.93
Metatranscriptomes 0.62
Isolates 7.45

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.04
Nodule 0
Rhizoplane 1.86
Rhizosphere 70.81
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265338_10129707 3300028800 Bacteria 1993
2 JGI25151J46595_10000465 3300003187 Bacteria 38708
3 JGI25165J46597_1001577 3300003214 Bacteria 11158
4 JGI25153J46596_10000012 3300003215 Bacteria 308056
5 Ga0055531_10009227 3300003794 Bacteria 5074
6 Ga0070666_10003587 3300005335 Bacteria 9406
7 Ga0070680_100024467 3300005336 Bacteria 4825
8 Ga0070671_100030371 3300005355 Bacteria 4459
9 Ga0070673_100156918 3300005364 Bacteria 1932
10 Ga0070659_100154603 3300005366 Bacteria 1872
11 Ga0070709_10051391 3300005434 Bacteria 2587
12 Ga0070714_100000438 3300005435 Bacteria 30225
13 Ga0070713_100010085 3300005436 Bacteria 6812
14 Ga0070710_10006429 3300005437 Bacteria 5644
15 Ga0070711_100072925 3300005439 Bacteria 2424
16 Ga0070681_10001773 3300005458 Bacteria 19357
17 Ga0070681_10029245 3300005458 Bacteria 5532
18 Ga0070681_10029755 3300005458 Bacteria 5483
19 Ga0070679_100000566 3300005530 Bacteria 31366
20 Ga0070665_100017928 3300005548 Bacteria 7109
21 Ga0068856_100197949 3300005614 Bacteria 2024
22 Ga0068860_100137161 3300005843 Bacteria 2350
23 Ga0081540_1004674 3300005983 Bacteria 10360
24 Ga0081539_10000076 3300005985 Bacteria 229037
25 Ga0075369_10039691 3300006186 Bacteria 2011
26 Ga0075434_100065816 3300006871 Bacteria 3610
27 Ga0105245_10256675 3300009098 Bacteria 1700
28 Ga0105248_10010815 3300009177 Bacteria 10077
29 Ga0157370_10014964 3300013104 Bacteria 7910
30 Ga0157370_10128201 3300013104 Bacteria 2368
31 Ga0157375_10330815 3300013308 Bacteria 1688
32 Ga0163161_10143417 3300017792 Bacteria 1810
33 Ga0213872_10000438 3300021361 Bacteria 34149
34 Ga0213872_10000603 3300021361 Bacteria 27341
35 Ga0213872_10006291 3300021361 Bacteria 5985
36 Ga0213875_10001741 3300021388 Bacteria 13635
37 Ga0213875_10015927 3300021388 Bacteria 3653
38 Ga0209233_1000329 3300025261 Bacteria 48978
39 Ga0209676_1016214 3300025292 Bacteria 2702
40 Ga0209758_1000059 3300025297 Bacteria 328458
41 Ga0209050_1009847 3300025298 Bacteria 4810
42 Ga0209257_1004391 3300025304 Bacteria 10962
43 Ga0209257_1020867 3300025304 Bacteria 2402
44 Ga0207707_10004172 3300025912 Bacteria 12796
45 Ga0207707_10104494 3300025912 Bacteria 2475
46 Ga0207660_10016835 3300025917 Bacteria 4847
47 Ga0207644_10018291 3300025931 Bacteria 4738
48 Ga0207667_10102565 3300025949 Bacteria 2951
49 Ga0207651_10067699 3300025960 Bacteria 2514
50 Ga0209981_1000750 3300027378 Bacteria 4098
51 Ga0268265_10007090 3300028380 Bacteria 7574
52 Ga0268264_10025577 3300028381 Bacteria 4823
53 Ga0307517_10101819 3300028786 Bacteria 2257
54 Ga0307515_10001758 3300028794 Bacteria 48278
55 Ga0265338_10007223 3300028800 Bacteria 13868
56 Ga0265331_10000066 3300031250 Bacteria 163571
57 Ga0265331_10001698 3300031250 Bacteria 15878
58 Ga0307513_10005748 3300031456 Bacteria 16317
59 Ga0307408_100026866 3300031548 Bacteria 3960
60 Ga0265313_10000607 3300031595 Bacteria 37291
61 Ga0265313_10000788 3300031595 Bacteria 32028
62 Ga0307508_10173416 3300031616 Bacteria 1760
63 Ga0373935_0066106 3300035692 Bacteria 2322
64 Ga0373933_0022363 3300035724 Bacteria 3601
65 Ga0373947_0010617 3300035725 Bacteria 5284
66 Ga0373937_0002676 3300036401 Bacteria 14852
67 Ga0373937_0008305 3300036401 Bacteria 9015
68 Ga0373937_0040067 3300036401 Bacteria 4270
69 Ga0373925_0012712 3300037068 Bacteria 6097
70 Ga0395899_0010570 3300037312 Bacteria 7072
71 Ga0395900_0019016 3300037418 Bacteria 7005
72 Ga0395898_0021163 3300037466 Bacteria 6597
73 Ga0436364_0347913 3300037853 Bacteria 3686
74 Ga0436364_0420645 3300037853 Bacteria 2778
75 Ga0436364_0461006 3300037853 Bacteria 7654
76 Ga0436364_0966921 3300037853 Bacteria 12120
77 Ga0436364_1508253 3300037853 Bacteria 2247
78 Ga0395901_0039928 3300038443 Bacteria 4858
79 Ga0436365_0816294 3300039437 Bacteria 10089
80 Ga0436365_0950694 3300039437 Bacteria 5000
81 Ga0436360_0006716 3300039438 Bacteria 2043
82 Ga0436361_0183485 3300039447 Bacteria 3993
83 Ga0436361_0207410 3300039447 Bacteria 20395
84 Ga0436361_0499302 3300039447 Bacteria 4098
85 Ga0436361_0724761 3300039447 Bacteria 2370
86 Ga0436361_0795199 3300039447 Bacteria 71391
87 Ga0453684_0000006 3300044712 Bacteria 1364191
88 Ga0453684_0016272 3300044712 Bacteria 11646
89 Ga0453684_0018305 3300044712 Bacteria 10766
90 Ga0451576_0000030 3300045051 Bacteria 403352
91 Ga0451576_0002190 3300045051 Bacteria 30140
92 Ga0451576_0102425 3300045051 Bacteria 2978
93 Ga0495664_0002100 3300046477 Bacteria 10652
94 Ga0495610_0013255 3300046512 Bacteria 4905
95 Ga0495587_0041635 3300046536 Bacteria 2740
96 Ga0495667_0052510 3300046559 Bacteria 2685
97 Ga0495599_0036982 3300046678 Bacteria 3067
98 Ga0495674_0054511 3300047319 Bacteria 3511
99 Ga0495672_0019860 3300047320 Bacteria 4419
100 Ga0495680_0064261 3300047322 Bacteria 2815
101 Ga0495675_0006224 3300047444 Bacteria 7298
102 Ga0495602_0002878 3300048088 Bacteria 17634
103 Ga0496102_0188914 3300048905 Bacteria 1941
104 Ga0496108_0030933 3300048911 Bacteria 4437
105 Ga0496112_0359396 3300048915 Bacteria 1398
106 Ga0496119_0077419 3300048922 Bacteria 1927
107 Ga0501032_0007643 3300049569 Bacteria 7882
108 Ga0501033_0002052 3300049570 Bacteria 17521
109 Ga0501034_0005818 3300049571 Bacteria 13410
110 Ga0501034_0116122 3300049571 Bacteria 2664
111 Ga0501036_0080709 3300049572 Bacteria 2749
112 Ga0501043_0007669 3300049579 Bacteria 8548
113 Ga0501043_0054269 3300049579 Bacteria 3147
114 Ga0501046_0001214 3300049580 Bacteria 24970
115 Ga0501047_0086093 3300049581 Bacteria 3019
116 Ga0501047_0087643 3300049581 Bacteria 2990
117 Ga0501048_0001550 3300049582 Bacteria 17453
118 Ga0501067_0008326 3300049583 Bacteria 5757
119 Ga0501068_0017073 3300049584 Bacteria 4195
120 Ga0501069_0000066 3300049585 Bacteria 55164
121 Ga0501070_0006544 3300049586 Bacteria 9908
122 Ga0501074_0013529 3300049590 Bacteria 5931
123 Ga0501080_0016673 3300049742 Bacteria 6784
124 Ga0501083_0007776 3300049744 Bacteria 7593
125 Ga0501083_0007816 3300049744 Bacteria 7576
126 Ga0501035_0005266 3300049822 Bacteria 12242
127 Ga0501044_0006624 3300049823 Bacteria 12776
128 Ga0501044_0059253 3300049823 Bacteria 3923
129 nmdc:mga0k408_73401_c1 3300050493 Bacteria 1998
130 nmdc:mga05p37_173595_c1 3300050507 Bacteria 2627
131 nmdc:mga08x19_73121_c1 3300050514 Bacteria 2237
132 Ga0495601_0002634 3300053077 Bacteria 10185
133 Ga0495612_0002039 3300053078 Bacteria 8321
134 Ga0495619_0009385 3300053085 Bacteria 6173
135 Ga0500651_0013491 3300053093 Bacteria 4981
136 Ga0500562_002850 3300053108 Bacteria 4308
137 Ga0500642_0006874 3300053130 Bacteria 3783
138 Ga0500568_0008433 3300053139 Bacteria 4965
139 Ga0500616_0001786 3300053153 Bacteria 19621
140 Ga0500616_0044707 3300053153 Bacteria 2362
141 Ga0500636_0002083 3300053177 Bacteria 11044
142 Ga0500609_001486 3300053731 Bacteria 3422
143 Ga0500609_004464 3300053731 Bacteria 1935
144 Ga0501084_0011330 3300054114 Bacteria 7385
145 Ga0587111_0006972 3300060346 Bacteria 1815
146 Ga0501082_0004543 3300060353 Bacteria 12114
147 Ga0501082_0005641 3300060353 Bacteria 10866
148 Ga0501082_0030232 3300060353 Bacteria 4668
149 Ga0501082_0074213 3300060353 Bacteria 2930
150 2523105263 2522572158 Bacteria 6514390
151 2599101435 2597490356 Bacteria 7030811
152 2844536483 2844533157 Bacteria 7517899
153 2846953841 2846952575 Bacteria 6587527
154 2848859975 2848858292 Bacteria 7391279
155 2883294319 2883291878 Bacteria 5894118
156 2883357156 2883354860 Bacteria 5865246
157 2883580541 2883577096 Bacteria 4709178
158 2897809961 2897803580 Bacteria 7000062
159 2929203559 2929199973 Bacteria 7260745
160 8054004542 8054002106 Bacteria 7987183
161 8055911251 8055909800 Bacteria 7278581
162 Ga0265338_10129707
163 JGI25151J46595_10000465
164 JGI25165J46597_1001577
165 JGI25153J46596_10000012
166 Ga0055531_10009227
167 Ga0070666_10003587
168 Ga0070680_100024467
169 Ga0070671_100030371
170 Ga0070673_100156918
171 Ga0070659_100154603
172 Ga0070709_10051391
173 Ga0070714_100000438
174 Ga0070713_100010085
175 Ga0070710_10006429
176 Ga0070711_100072925
177 Ga0070681_10001773
178 Ga0070681_10029245
179 Ga0070681_10029755
180 Ga0070679_100000566
181 Ga0070665_100017928
182 Ga0068856_100197949
183 Ga0068860_100137161
184 Ga0081540_1004674
185 Ga0081539_10000076
186 Ga0075369_10039691
187 Ga0075434_100065816
188 Ga0105245_10256675
189 Ga0105248_10010815
190 Ga0157370_10014964
191 Ga0157370_10128201
192 Ga0157375_10330815
193 Ga0163161_10143417
194 Ga0213872_10000438
195 Ga0213872_10000603
196 Ga0213872_10006291
197 Ga0213875_10001741
198 Ga0213875_10015927
199 Ga0209233_1000329
200 Ga0209676_1016214
201 Ga0209758_1000059
202 Ga0209050_1009847
203 Ga0209257_1004391
204 Ga0209257_1020867
205 Ga0207707_10004172
206 Ga0207707_10104494
207 Ga0207660_10016835
208 Ga0207644_10018291
209 Ga0207667_10102565
210 Ga0207651_10067699
211 Ga0209981_1000750
212 Ga0268265_10007090
213 Ga0268264_10025577
214 Ga0307517_10101819
215 Ga0307515_10001758
216 Ga0265338_10007223
217 Ga0265331_10000066
218 Ga0265331_10001698
219 Ga0307513_10005748
220 Ga0307408_100026866
221 Ga0265313_10000607
222 Ga0265313_10000788
223 Ga0307508_10173416
224 Ga0373935_0066106
225 Ga0373933_0022363
226 Ga0373947_0010617
227 Ga0373937_0002676
228 Ga0373937_0008305
229 Ga0373937_0040067
230 Ga0373925_0012712
231 Ga0395899_0010570
232 Ga0395900_0019016
233 Ga0395898_0021163
234 Ga0436364_0347913
235 Ga0436364_0420645
236 Ga0436364_0461006
237 Ga0436364_0966921
238 Ga0436364_1508253
239 Ga0395901_0039928
240 Ga0436365_0816294
241 Ga0436365_0950694
242 Ga0436360_0006716
243 Ga0436361_0183485
244 Ga0436361_0207410
245 Ga0436361_0499302
246 Ga0436361_0724761
247 Ga0436361_0795199
248 Ga0453684_0000006
249 Ga0453684_0016272
250 Ga0453684_0018305
251 Ga0451576_0000030
252 Ga0451576_0002190
253 Ga0451576_0102425
254 Ga0495664_0002100
255 Ga0495610_0013255
256 Ga0495587_0041635
257 Ga0495667_0052510
258 Ga0495599_0036982
259 Ga0495674_0054511
260 Ga0495672_0019860
261 Ga0495680_0064261
262 Ga0495675_0006224
263 Ga0495602_0002878
264 Ga0496102_0188914
265 Ga0496108_0030933
266 Ga0496112_0359396
267 Ga0496119_0077419
268 Ga0501032_0007643
269 Ga0501033_0002052
270 Ga0501034_0005818
271 Ga0501034_0116122
272 Ga0501036_0080709
273 Ga0501043_0007669
274 Ga0501043_0054269
275 Ga0501046_0001214
276 Ga0501047_0086093
277 Ga0501047_0087643
278 Ga0501048_0001550
279 Ga0501067_0008326
280 Ga0501068_0017073
281 Ga0501069_0000066
282 Ga0501070_0006544
283 Ga0501074_0013529
284 Ga0501080_0016673
285 Ga0501083_0007776
286 Ga0501083_0007816
287 Ga0501035_0005266
288 Ga0501044_0006624
289 Ga0501044_0059253
290 nmdc:mga0k408_73401_c1
291 nmdc:mga05p37_173595_c1
292 nmdc:mga08x19_73121_c1
293 Ga0495601_0002634
294 Ga0495612_0002039
295 Ga0495619_0009385
296 Ga0500651_0013491
297 Ga0500562_002850
298 Ga0500642_0006874
299 Ga0500568_0008433
300 Ga0500616_0001786
301 Ga0500616_0044707
302 Ga0500636_0002083
303 Ga0500609_001486
304 Ga0500609_004464
305 Ga0501084_0011330
306 Ga0587111_0006972
307 Ga0501082_0004543
308 Ga0501082_0005641
309 Ga0501082_0030232
310 Ga0501082_0074213
311 2523105263
312 2599101435
313 2844536483
314 2846953841
315 2848859975
316 2883294319
317 2883357156
318 2883580541
319 2897809961
320 2929203559
321 8054004542
322 8055911251

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00361

Proton_antipo_M

Proton-conducting membrane transporter

121

409

0.97

PF01059

Oxidored_q5_N

NADH-ubiquinone oxidoreductase chain 4, amino terminus

51

121

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
8beh-assembly1.cif.gz_M cryo-em structure of the arabidopsis thaliana i+iii2 supercomplex (ci membrane tip) 0.9829 272 488
8e73-assembly1.cif.gz_4M vigna radiata supercomplex i+iii2 (full bridge) 0.9818 7 490
7ar7-assembly1.cif.gz_M cryo-em structure of arabidopsis thaliana complex-i (open conformation) 0.9775 7 490
8e73-assembly1.cif.gz_4M vigna radiata supercomplex i+iii2 (full bridge) 0.9678 7 490
7zmh-assembly1.cif.gz_4 cryoem structure of mitochondrial complex i from chaetomium thermophilum (state 1) - membrane arm 0.9644 6 488
ID Description Score Start End Superfamily
af_P26288_1_130_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.9427 1 133 1.20.1070.10
af_M1FQK6_1_136_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.9344 8 134 1.20.1070.10
af_P26288_1_130_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.9288 1 133 1.20.1070.10
af_P0AFE8_1_132_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.8849 7 133 1.20.1070.10
af_P0AFE8_1_132_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.8466 7 133 1.20.1070.10
ID Description Score Start End GO Terms
AF-A0A3B9EFA4-F1-model_v4 NADH-quinone oxidoreductase subunit M 0.9903 118 496 GO:0003954
GO:0008137
GO:0012505
GO:0015990
GO:0016020
GO:0042773
GO:0048039
AF-K1YWP4-F1-model_v4 Proton-translocating NADH-quinone oxidoreductase, chain M 0.9894 83 493 GO:0003954
GO:0008137
GO:0012505
GO:0015990
GO:0016020
GO:0042773
GO:0048039
AF-H6AXG8-F1-model_v4 NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) 0.987 44 368 GO:0003954
GO:0008137
GO:0015990
GO:0031966
GO:0042773
GO:0048039
AF-A0A369VSG0-F1-model_v4 NADH-quinone oxidoreductase subunit M (EC 1.6.5.11) 0.9851 1 493 GO:0003954
GO:0008137
GO:0012505
GO:0015990
GO:0016020
GO:0042773
GO:0048039
AF-A0A3B9EFA4-F1-model_v4 NADH-quinone oxidoreductase subunit M 0.9851 118 496 GO:0003954
GO:0008137
GO:0012505
GO:0015990
GO:0016020
GO:0042773
GO:0048039

Map