F238673

General Info

Members Datasets Scaffolds Average Seq Length
162 118 324 337

Family's Representative Sequence

Representative Sequence 3300005439|Ga0070711_100009721|Ga0070711_1000097213
Length 396
Sequence MSDNGLGNRSAEGYRSSREDWLAAGHGNGAPGSILALETSCDDTCAAVLDVRGRVRSNVISSQGVHDRFGGVVPEIASRHHLELVNLVVEQALSEAGVALGEIELVAATQGPGLVGALLVGFSTAKALAAGRELPFVPVDHLQGHVAANFIVPPEVGGGAKVDRPGITESPSGSGQAFEPPFVCLIASGGHTLLTHVTEHNDFRVLGRTLDDAAGEAFDKGARMLGLGYPGGAALERLAAGGDPQAFALPGSRADRARGGKGTGRRAFEQGMDFSFAGLKTALLYKLRELSAAEIAVRGADLAASYQAAIVDSLLTRAERGLLETGLDRLAVGGGVAANGELRRRLDTLGATVHVPARELCTDNAAMIASAARYVERLQYPTYLGLDAYATGERAR

Samples

Sample ID Description Type Environment
1 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
4 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
5 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
8 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
9 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
12 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
13 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
14 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
15 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
16 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
17 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
18 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
19 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
20 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
34 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
35 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
36 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
37 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
38 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
39 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
40 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
41 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
42 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
43 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
44 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
45 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
46 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
47 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
48 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
49 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
50 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
51 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
52 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
53 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
54 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
55 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
56 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
57 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
58 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
59 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
60 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
61 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
62 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
63 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
64 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
65 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
66 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
67 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
68 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
69 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
70 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
71 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
72 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
73 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
74 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
75 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
76 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
77 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
78 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
79 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
80 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
81 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
82 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
83 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
84 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
85 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
86 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
87 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
88 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
99 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
100 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
101 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
102 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
103 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
104 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
105 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
106 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
107 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
108 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
111 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
112 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
113 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
114 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
115 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
116 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
117 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
118 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.62
Nodule 0
Rhizoplane 8.64
Rhizosphere 79.01
Stem 0
Stem Tuber 0
Unclassified 1.23

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070711_100009721 3300005439 Bacteria 5926
2 Ga0070683_100055600 3300005329 Bacteria 3673
3 Ga0070692_10019701 3300005345 Bacteria 3260
4 Ga0070669_100029617 3300005353 Bacteria 3947
5 Ga0070659_100000043 3300005366 Bacteria 102267
6 Ga0070714_100000441 3300005435 Bacteria 30143
7 Ga0070714_100009599 3300005435 Bacteria 7614
8 Ga0070710_10000003 3300005437 Bacteria 277772
9 Ga0070711_100029495 3300005439 Bacteria 3621
10 Ga0070705_100001429 3300005440 Bacteria 12638
11 Ga0070700_100088725 3300005441 Bacteria 2013
12 Ga0070708_100325059 3300005445 Bacteria 1449
13 Ga0068856_100038262 3300005614 Bacteria 4709
14 Ga0070717_10000001 3300006028 Bacteria 465573
15 Ga0070712_100000001 3300006175 Bacteria 343916
16 Ga0070712_100019560 3300006175 Bacteria 4418
17 Ga0070712_100035777 3300006175 Bacteria 3373
18 Ga0075429_100032380 3300006880 Bacteria 4544
19 Ga0105240_10006414 3300009093 Bacteria 17299
20 Ga0105240_10020705 3300009093 Bacteria 8764
21 Ga0105237_10002168 3300009545 Bacteria 24647
22 Ga0105246_10013066 3300011119 Bacteria 5195
23 Ga0163163_10134347 3300014325 Bacteria 2514
24 Ga0213874_10001218 3300021377 Bacteria 5284
25 Ga0207692_10000002 3300025898 Bacteria 453100
26 Ga0207692_10000008 3300025898 Bacteria 183372
27 Ga0207692_10104244 3300025898 Bacteria 1563
28 Ga0207707_10123706 3300025912 Bacteria 2262
29 Ga0207695_10025150 3300025913 Bacteria 6676
30 Ga0207671_10004124 3300025914 Bacteria 14049
31 Ga0207693_10000003 3300025915 Bacteria 245977
32 Ga0207693_10008528 3300025915 Bacteria 8390
33 Ga0207693_10128038 3300025915 Bacteria 1996
34 Ga0207663_10000538 3300025916 Bacteria 16677
35 Ga0207657_10020378 3300025919 Bacteria 6267
36 Ga0207646_10171509 3300025922 Bacteria 1959
37 Ga0207664_10000004 3300025929 Bacteria 493014
38 Ga0207664_10002648 3300025929 Bacteria 11865
39 Ga0207664_10046353 3300025929 Bacteria 3412
40 Ga0207690_10000095 3300025932 Bacteria 73025
41 Ga0207679_10023010 3300025945 Bacteria 4253
42 Ga0207708_10178273 3300026075 Bacteria 1686
43 Ga0207702_10052159 3300026078 Bacteria 3460
44 Ga0265337_1003442 3300028556 Bacteria 6856
45 Ga0265326_10000006 3300028558 Bacteria 233392
46 Ga0265326_10000703 3300028558 Bacteria 12367
47 Ga0265326_10052218 3300028558 Bacteria 1157
48 Ga0265319_1000722 3300028563 Bacteria 21656
49 Ga0265319_1001476 3300028563 Bacteria 14047
50 Ga0265334_10000016 3300028573 Bacteria 147961
51 Ga0265318_10002585 3300028577 Bacteria 9581
52 Ga0265318_10002794 3300028577 Bacteria 9136
53 Ga0265336_10000004 3300028666 Bacteria 418303
54 Ga0265336_10010327 3300028666 Bacteria 3198
55 Ga0265338_10000012 3300028800 Bacteria 418599
56 Ga0265338_10002259 3300028800 Bacteria 29345
57 Ga0265324_10000857 3300029957 Bacteria 19544
58 Ga0265324_10007010 3300029957 Bacteria 4631
59 Ga0265320_10007385 3300031240 Bacteria 6826
60 Ga0265329_10025073 3300031242 Unclassified 1976
61 Ga0265340_10000001 3300031247 Bacteria 1647668
62 Ga0265339_10003737 3300031249 Bacteria 10616
63 Ga0265339_10063572 3300031249 Bacteria 1982
64 Ga0265331_10002729 3300031250 Bacteria 11762
65 Ga0265327_10008231 3300031251 Bacteria 7818
66 Ga0265316_10003596 3300031344 Bacteria 15623
67 Ga0265316_10015022 3300031344 Bacteria 6788
68 Ga0265316_10070082 3300031344 Bacteria 2705
69 Ga0265314_10007367 3300031711 Bacteria 9552
70 Ga0265342_10011456 3300031712 Bacteria 6069
71 Ga0316576_10089534 3300031727 Bacteria 2292
72 Ga0316576_10099182 3300031727 Bacteria 2176
73 Ga0316583_10043545 3300032133 Bacteria 1586
74 Ga0436364_0331749 3300037853 Bacteria 8159
75 Ga0436364_1218594 3300037853 Bacteria 2559
76 Ga0400490_36999 3300038726 Unclassified 2620
77 Ga0400491_08109 3300038727 Bacteria 2395
78 Ga0400491_19972 3300038727 Bacteria 8913
79 Ga0400485_02019 3300038735 Bacteria 45667
80 Ga0400485_05599 3300038735 Bacteria 15301
81 Ga0400488_52153 3300038741 Bacteria 1482
82 Ga0400486_00349 3300038742 Bacteria 7869
83 Ga0400486_06321 3300038742 Bacteria 11398
84 Ga0400486_11693 3300038742 Bacteria 4327
85 Ga0400483_028550 3300039062 Bacteria 18963
86 Ga0400483_108391 3300039062 Bacteria 6847
87 Ga0400483_253334 3300039062 Bacteria 9216
88 Ga0400489_14426 3300039093 Bacteria 69687
89 Ga0400489_46488 3300039093 Bacteria 15012
90 Ga0400487_60640 3300039110 Bacteria 8200
91 Ga0436363_1156322 3300039450 Bacteria 1167
92 Ga0466969_0014257 3300044656 Bacteria 4178
93 Ga0466966_0020747 3300044684 Bacteria 4319
94 Ga0466961_0014558 3300044693 Bacteria 5053
95 Ga0466959_0003891 3300045049 Bacteria 9908
96 Ga0466959_0134796 3300045049 Bacteria 1749
97 Ga0466958_0000502 3300045836 Bacteria 16435
98 Ga0466958_0001290 3300045836 Bacteria 11775
99 Ga0466967_0056737 3300045976 Bacteria 3455
100 Ga0466967_0375467 3300045976 Bacteria 1380
101 Ga0495653_0000864 3300046463 Bacteria 23380
102 Ga0495664_0000011 3300046477 Bacteria 253351
103 Ga0495618_0000142 3300046514 Bacteria 51147
104 Ga0495630_0000072 3300046517 Bacteria 79669
105 Ga0495645_0000034 3300046543 Bacteria 102615
106 Ga0495645_0000194 3300046543 Bacteria 43673
107 Ga0495667_0084610 3300046559 Bacteria 2059
108 Ga0495657_0000093 3300046675 Bacteria 78860
109 Ga0495604_0000057 3300047317 Bacteria 98770
110 Ga0495676_0281016 3300047321 Bacteria 1127
111 Ga0495684_0005236 3300047471 Bacteria 10105
112 Ga0496100_0000375 3300048903 Bacteria 21768
113 Ga0496101_0001428 3300048904 Bacteria 14270
114 Ga0496102_0000148 3300048905 Bacteria 95925
115 Ga0496103_0000950 3300048906 Bacteria 20702
116 Ga0496104_0000093 3300048907 Bacteria 87156
117 Ga0496104_0116179 3300048907 Bacteria 2568
118 Ga0496110_0050218 3300048913 Bacteria 3662
119 Ga0496111_0000057 3300048914 Bacteria 45020
120 Ga0496112_0000403 3300048915 Bacteria 28271
121 Ga0496112_0116445 3300048915 Bacteria 2643
122 Ga0496112_0209115 3300048915 Bacteria 1909
123 Ga0496113_0075168 3300048916 Bacteria 2578
124 Ga0496115_0000006 3300048918 Bacteria 252944
125 Ga0496115_0000015 3300048918 Bacteria 200845
126 Ga0501031_0008294 3300049568 Bacteria 6758
127 Ga0501032_0227423 3300049569 Bacteria 1213
128 Ga0501036_0021422 3300049572 Bacteria 5434
129 Ga0501036_0044447 3300049572 Bacteria 3762
130 Ga0501038_0075606 3300049574 Bacteria 2846
131 Ga0501039_0109698 3300049575 Bacteria 2157
132 Ga0501040_0000928 3300049576 Bacteria 18422
133 Ga0501042_0034960 3300049578 Bacteria 3565
134 Ga0501046_0051126 3300049580 Bacteria 3262
135 Ga0501047_0217067 3300049581 Bacteria 1769
136 Ga0501048_0024296 3300049582 Bacteria 4424
137 Ga0501067_0022021 3300049583 Bacteria 3526
138 Ga0501069_0144810 3300049585 Bacteria 1364
139 Ga0501071_0022203 3300049587 Bacteria 4423
140 Ga0501072_0018230 3300049588 Bacteria 5400
141 Ga0501072_0091665 3300049588 Bacteria 2413
142 Ga0501073_0041792 3300049589 Bacteria 3238
143 Ga0501074_0010566 3300049590 Bacteria 6701
144 Ga0501076_0014147 3300049592 Bacteria 6001
145 Ga0501079_0025084 3300049741 Bacteria 4573
146 Ga0501080_0014369 3300049742 Bacteria 7291
147 Ga0501081_0035510 3300049743 Bacteria 3393
148 Ga0501035_0034063 3300049822 Bacteria 4629
149 Ga0501044_0439894 3300049823 Bacteria 1212
150 Ga0501045_0113933 3300049824 Bacteria 2005
151 nmdc:mga09592_31235_c1 3300050508 Bacteria 4437
152 Ga0495601_0007831 3300053077 Bacteria 6285
153 Ga0495601_0128091 3300053077 Bacteria 1652
154 Ga0495601_0224206 3300053077 Bacteria 1228
155 Ga0495612_0000395 3300053078 Bacteria 17485
156 Ga0500556_0000943 3300053104 Bacteria 15733
157 Ga0501084_0034900 3300054114 Bacteria 4206
158 Ga0501084_0182412 3300054114 Bacteria 1772
159 Ga0501082_0002732 3300060353 Bacteria 15414
160 Ga0501082_0304296 3300060353 Bacteria 1388
161 Ga0466962_0032640 3300061719 Bacteria 2492
162 Ga0530510_0006456 3300061734 Bacteria 8166
163 Ga0070711_100009721
164 Ga0070683_100055600
165 Ga0070692_10019701
166 Ga0070669_100029617
167 Ga0070659_100000043
168 Ga0070714_100000441
169 Ga0070714_100009599
170 Ga0070710_10000003
171 Ga0070711_100029495
172 Ga0070705_100001429
173 Ga0070700_100088725
174 Ga0070708_100325059
175 Ga0068856_100038262
176 Ga0070717_10000001
177 Ga0070712_100000001
178 Ga0070712_100019560
179 Ga0070712_100035777
180 Ga0075429_100032380
181 Ga0105240_10006414
182 Ga0105240_10020705
183 Ga0105237_10002168
184 Ga0105246_10013066
185 Ga0163163_10134347
186 Ga0213874_10001218
187 Ga0207692_10000002
188 Ga0207692_10000008
189 Ga0207692_10104244
190 Ga0207707_10123706
191 Ga0207695_10025150
192 Ga0207671_10004124
193 Ga0207693_10000003
194 Ga0207693_10008528
195 Ga0207693_10128038
196 Ga0207663_10000538
197 Ga0207657_10020378
198 Ga0207646_10171509
199 Ga0207664_10000004
200 Ga0207664_10002648
201 Ga0207664_10046353
202 Ga0207690_10000095
203 Ga0207679_10023010
204 Ga0207708_10178273
205 Ga0207702_10052159
206 Ga0265337_1003442
207 Ga0265326_10000006
208 Ga0265326_10000703
209 Ga0265326_10052218
210 Ga0265319_1000722
211 Ga0265319_1001476
212 Ga0265334_10000016
213 Ga0265318_10002585
214 Ga0265318_10002794
215 Ga0265336_10000004
216 Ga0265336_10010327
217 Ga0265338_10000012
218 Ga0265338_10002259
219 Ga0265324_10000857
220 Ga0265324_10007010
221 Ga0265320_10007385
222 Ga0265329_10025073
223 Ga0265340_10000001
224 Ga0265339_10003737
225 Ga0265339_10063572
226 Ga0265331_10002729
227 Ga0265327_10008231
228 Ga0265316_10003596
229 Ga0265316_10015022
230 Ga0265316_10070082
231 Ga0265314_10007367
232 Ga0265342_10011456
233 Ga0316576_10089534
234 Ga0316576_10099182
235 Ga0316583_10043545
236 Ga0436364_0331749
237 Ga0436364_1218594
238 Ga0400490_36999
239 Ga0400491_08109
240 Ga0400491_19972
241 Ga0400485_02019
242 Ga0400485_05599
243 Ga0400488_52153
244 Ga0400486_00349
245 Ga0400486_06321
246 Ga0400486_11693
247 Ga0400483_028550
248 Ga0400483_108391
249 Ga0400483_253334
250 Ga0400489_14426
251 Ga0400489_46488
252 Ga0400487_60640
253 Ga0436363_1156322
254 Ga0466969_0014257
255 Ga0466966_0020747
256 Ga0466961_0014558
257 Ga0466959_0003891
258 Ga0466959_0134796
259 Ga0466958_0000502
260 Ga0466958_0001290
261 Ga0466967_0056737
262 Ga0466967_0375467
263 Ga0495653_0000864
264 Ga0495664_0000011
265 Ga0495618_0000142
266 Ga0495630_0000072
267 Ga0495645_0000034
268 Ga0495645_0000194
269 Ga0495667_0084610
270 Ga0495657_0000093
271 Ga0495604_0000057
272 Ga0495676_0281016
273 Ga0495684_0005236
274 Ga0496100_0000375
275 Ga0496101_0001428
276 Ga0496102_0000148
277 Ga0496103_0000950
278 Ga0496104_0000093
279 Ga0496104_0116179
280 Ga0496110_0050218
281 Ga0496111_0000057
282 Ga0496112_0000403
283 Ga0496112_0116445
284 Ga0496112_0209115
285 Ga0496113_0075168
286 Ga0496115_0000006
287 Ga0496115_0000015
288 Ga0501031_0008294
289 Ga0501032_0227423
290 Ga0501036_0021422
291 Ga0501036_0044447
292 Ga0501038_0075606
293 Ga0501039_0109698
294 Ga0501040_0000928
295 Ga0501042_0034960
296 Ga0501046_0051126
297 Ga0501047_0217067
298 Ga0501048_0024296
299 Ga0501067_0022021
300 Ga0501069_0144810
301 Ga0501071_0022203
302 Ga0501072_0018230
303 Ga0501072_0091665
304 Ga0501073_0041792
305 Ga0501074_0010566
306 Ga0501076_0014147
307 Ga0501079_0025084
308 Ga0501080_0014369
309 Ga0501081_0035510
310 Ga0501035_0034063
311 Ga0501044_0439894
312 Ga0501045_0113933
313 nmdc:mga09592_31235_c1
314 Ga0495601_0007831
315 Ga0495601_0128091
316 Ga0495601_0224206
317 Ga0495612_0000395
318 Ga0500556_0000943
319 Ga0501084_0034900
320 Ga0501084_0182412
321 Ga0501082_0002732
322 Ga0501082_0304296
323 Ga0466962_0032640
324 Ga0530510_0006456

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00814

TsaD

tRNA N6-adenosine threonylcarbamoyltransferase

54

157

0.95

PF00814

TsaD

tRNA N6-adenosine threonylcarbamoyltransferase

166

370

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
4wq5-assembly1.cif.gz_A ygjd(v85e)-yeaz heterodimer in complex with atp 0.9449 2 305
4ydu-assembly1.cif.gz_A crystal structure of e. coli ygjd-yeaz heterodimer in complex with adp 0.9387 2 305
4wq4-assembly2.cif.gz_B e. coli ygjd(e12a)-yeaz heterodimer in complex with atp 0.9373 2 305
3zeu-assembly2.cif.gz_B structure of a salmonella typhimurium ygjd-yeaz heterodimer bound to atpgammas 0.9365 2 305
5jmv-assembly1.cif.gz_A crystal structure of mjkae1-pfupcc1 complex 0.9165 2 306
ID Description Score Start End Superfamily
af_A0A1D6MRI9_77_194_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9682 4 117 3.30.420.40
af_Q32LQ3_26_143_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9572 1 114 3.30.420.40
af_Q54EW4_18_143_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9518 1 118 3.30.420.40
af_Q2FWL2_8_131_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9458 4 122 3.30.420.40
3enoB01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9368 2 118 3.30.420.40
ID Description Score Start End GO Terms
AF-A0A6J5Z377-F1-model_v4 N(6)-L-threonylcarbamoyladenine synthase (EC 2.3.1.234) 0.9806 2 322 GO:0002949
GO:0046872
GO:0061711
AF-A0A0P0V193-F1-model_v4 N(6)-L-threonylcarbamoyladenine synthase (EC 2.3.1.234) 0.9677 2 120 GO:0005739
GO:0008033
GO:0046872
GO:0061711
AF-A0A286B4J3-F1-model_v4 tRNA N6-adenosine threonylcarbamoyltransferase (EC 2.3.1.234) (N6-L-threonylcarbamoyladenine synthase) (t(6)A synthase) (t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD) (tRNA threonylcarbamoyladenosine biosynthesis protein TsaD) 0.9659 2 306 GO:0002949
GO:0005506
GO:0005737
GO:0061711
AF-A0A078BER6-F1-model_v4 tRNA N6-adenosine threonylcarbamoyltransferase (EC 2.3.1.234) (N6-L-threonylcarbamoyladenine synthase) (t(6)A synthase) (t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD) (tRNA threonylcarbamoyladenosine biosynthesis protein TsaD) 0.9656 33 305 GO:0002949
GO:0005506
GO:0005737
GO:0016787
GO:0061711
AF-A0A368XDQ8-F1-model_v4 tRNA N6-adenosine threonylcarbamoyltransferase (EC 2.3.1.234) (N6-L-threonylcarbamoyladenine synthase) (t(6)A synthase) (t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD) (tRNA threonylcarbamoyladenosine biosynthesis protein TsaD) 0.9649 2 306 GO:0002949
GO:0005506
GO:0005737
GO:0061711

Map