F239259

General Info

Members Datasets Scaffolds Average Seq Length
162 102 325 715

Family's Representative Sequence

Representative Sequence 3300013104|Ga0157370_10000263|Ga0157370_1000026349
Length 748
Sequence MCFHLAKTLDASGKNNQFSLSKMTSILQKNCAISVKLFYKLTHMKFFFCMGIILFFSCNSTHIKKYDTWNKYGANYENNRYSSLTQIDTGNVAQLQVAWTYHCGDADTLTQIQVNPVIADSVLYGVSPKLKLFALNAATGKPLWIFDPFDTTVTEVKGLGYFSMNVCRGVSYYSDGKNDKRIFYGAGSRLLCIDASTGKLIHSFGNNGSIDLHNDLGEDASQLYVSLTTPGLVYKDMIIVGDRLSEEMPAAPGHIRAYNVHTGKLQWIFHTIPQPGEPGYETWDNKEAYKHVGGANCWSGFSLDENRGILFVPTGSAVFDFYGGKRTGADLYADCLIALDVNTGKRIWHFQTVHHDLWDRDLPTAPALVTITKDGKKIDAVAQPTKSGFIFLFDRETGKPVYPIEEKPVPTTSELIGEKPYPARQVLNEKDLNHLIADSSYEDIKQKIASYKTGFIFNPPSKEGTIIFPGFDGGGEWGGPALDPTTGIIYINASEMPWVLTMIDVKKEIKNNENNLQAGKRLYAATCLTCHGPDRKGAGNYPSLIEVDKKYSEQQFLQLISTGRRMMPAFNQLAESEKKAIASYILDRKDEQQQKFIAPVHPSDDWNKLPYTSTGYNKFLTKEGYPAVRPPWGTLNAIDLNTGKLLWKDTLGDYPELKAKGIHSGTENYGGPAVTAGGLIFIAATSDAKFRAFNKRTGQLLWETDLPACGFATPSVYEVNGKEYVVIACGGGKLKKKSGDAYMAFALL

Samples

Sample ID Description Type Environment
1 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
6 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
7 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
8 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
9 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
16 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
30 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
31 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
32 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
36 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
37 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
38 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
41 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
42 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
48 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
49 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
50 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
73 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
74 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
75 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
76 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
77 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
78 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
79 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
80 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
81 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
82 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
83 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
84 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
85 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
86 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
87 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
88 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
89 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
90 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
91 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
92 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
93 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
94 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
95 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
96 2738541284 Pedobacter sp. YR016 Isolate Unclassified
97 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
98 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
99 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
100 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
101 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
102 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.68
Metatranscriptomes 0
Isolates 4.32

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.47
Nodule 0
Rhizoplane 0
Rhizosphere 88.89
Stem 0
Stem Tuber 0
Unclassified 1.85

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157370_10000263 3300013104 Bacteria 66700
2 SwRhRL2b_contig_341942 2162886007 Bacteria 47645
3 rootH1_10072367 3300003316 Bacteria 7950
4 rootH1_10072367 3300003323 Unclassified 2315
5 rootH2_10003167 3300003320 Bacteria 45886
6 rootH2_10004606 3300003320 Bacteria 102673
7 rootH2_10040443 3300003320 Bacteria 19021
8 JGI25160J50197_1001046 3300003354 Bacteria 14268
9 Ga0065714_10002431 3300005288 Bacteria 29565
10 Ga0065714_10002537 3300005288 Bacteria 27651
11 Ga0065704_10000254 3300005289 Bacteria 51402
12 Ga0065704_10074516 3300005289 Bacteria 6216
13 Ga0065704_10078326 3300005289 Bacteria 4463
14 Ga0070658_10000027 3300005327 Bacteria 164254
15 Ga0070676_10000794 3300005328 Bacteria 15592
16 Ga0070680_100048404 3300005336 Bacteria 3464
17 Ga0070660_100069751 3300005339 Bacteria 2742
18 Ga0070673_100011968 3300005364 Bacteria 5941
19 Ga0070673_100027411 3300005364 Unclassified 4223
20 Ga0070659_100081844 3300005366 Unclassified 2579
21 Ga0070663_100004151 3300005455 Bacteria 8463
22 Ga0070662_100000281 3300005457 Bacteria 30079
23 Ga0068867_100007858 3300005459 Bacteria 7537
24 Ga0068867_100016557 3300005459 Bacteria 5235
25 Ga0070698_100000842 3300005471 Bacteria 33593
26 Ga0070698_100009065 3300005471 Bacteria 10695
27 Ga0070698_100021251 3300005471 Bacteria 6800
28 Ga0070679_100057346 3300005530 Bacteria 3882
29 Ga0068853_100000502 3300005539 Bacteria 26729
30 Ga0070672_100028861 3300005543 Bacteria 4155
31 Ga0070665_100000178 3300005548 Bacteria 113002
32 Ga0068855_100029160 3300005563 Bacteria 6599
33 Ga0068855_100036755 3300005563 Bacteria 5827
34 Ga0068857_100049756 3300005577 Bacteria 3718
35 Ga0068852_100000186 3300005616 Bacteria 42147
36 Ga0068852_100000732 3300005616 Bacteria 21522
37 Ga0068859_100001033 3300005617 Bacteria 28515
38 Ga0068870_10009545 3300005840 Bacteria 4420
39 Ga0068860_100009410 3300005843 Bacteria 9711
40 Ga0068860_100012030 3300005843 Bacteria 8522
41 Ga0097621_100000917 3300006237 Bacteria 20622
42 Ga0097621_100053142 3300006237 Bacteria 3302
43 Ga0068871_100001037 3300006358 Bacteria 18605
44 Ga0075430_100006583 3300006846 Bacteria 9790
45 Ga0075430_100030197 3300006846 Bacteria 4602
46 Ga0075429_100022687 3300006880 Bacteria 5441
47 Ga0068865_100000129 3300006881 Bacteria 39057
48 Ga0097620_100001033 3300006931 Bacteria 28515
49 Ga0105240_10000095 3300009093 Bacteria 180935
50 Ga0105240_10000155 3300009093 Bacteria 140485
51 Ga0105240_10003959 3300009093 Bacteria 22879
52 Ga0105240_10004547 3300009093 Bacteria 21059
53 Ga0105240_10014544 3300009093 Bacteria 10741
54 Ga0105240_10039908 3300009093 Bacteria 6008
55 Ga0105240_10135316 3300009093 Bacteria 2952
56 Ga0105241_10004762 3300009174 Bacteria 9995
57 Ga0105241_10021843 3300009174 Bacteria 4736
58 Ga0105237_10014352 3300009545 Bacteria 8289
59 Ga0105238_10002422 3300009551 Bacteria 18713
60 Ga0105238_10006062 3300009551 Bacteria 11993
61 Ga0105249_10001655 3300009553 Bacteria 19524
62 Ga0105239_10000083 3300010375 Bacteria 132046
63 Ga0105239_10000640 3300010375 Bacteria 49772
64 Ga0105239_10057723 3300010375 Bacteria 4258
65 Ga0105239_10104466 3300010375 Bacteria 3136
66 Ga0105239_10111679 3300010375 Unclassified 3030
67 Ga0105246_10009960 3300011119 Bacteria 5864
68 Ga0157373_10000105 3300013100 Bacteria 65415
69 Ga0157373_10031747 3300013100 Bacteria 3801
70 Ga0157373_10077517 3300013100 Bacteria 2345
71 Ga0157371_10000510 3300013102 Bacteria 46799
72 Ga0157371_10002554 3300013102 Bacteria 17275
73 Ga0157371_10004436 3300013102 Bacteria 12248
74 Ga0157371_10018845 3300013102 Bacteria 5098
75 Ga0157370_10003105 3300013104 Bacteria 19666
76 Ga0157369_10000039 3300013105 Bacteria 188947
77 Ga0157374_10000003 3300013296 Bacteria 854471
78 Ga0157374_10005504 3300013296 Bacteria 10638
79 Ga0163162_10000008 3300013306 Bacteria 316194
80 Ga0163162_10001097 3300013306 Bacteria 25109
81 Ga0163162_10001371 3300013306 Bacteria 22637
82 Ga0157372_10000001 3300013307 Bacteria 791349
83 Ga0157372_10000896 3300013307 Bacteria 32329
84 Ga0157372_10001557 3300013307 Bacteria 24967
85 Ga0157372_10036443 3300013307 Bacteria 5421
86 Ga0157375_10021447 3300013308 Bacteria 5924
87 Ga0157375_10059892 3300013308 Bacteria 3774
88 Ga0182008_10000009 3300014497 Bacteria 331416
89 Ga0207426_1000052 3300025302 Bacteria 389825
90 Ga0207647_10001675 3300025904 Bacteria 17061
91 Ga0207645_10000099 3300025907 Bacteria 64087
92 Ga0207645_10003882 3300025907 Bacteria 11175
93 Ga0207705_10000053 3300025909 Bacteria 162124
94 Ga0207695_10000043 3300025913 Bacteria 444585
95 Ga0207695_10000165 3300025913 Bacteria 195908
96 Ga0207695_10007954 3300025913 Bacteria 13375
97 Ga0207695_10014999 3300025913 Bacteria 9142
98 Ga0207695_10035039 3300025913 Bacteria 5448
99 Ga0207671_10002330 3300025914 Bacteria 20492
100 Ga0207657_10026607 3300025919 Bacteria 5310
101 Ga0207657_10078746 3300025919 Bacteria 2774
102 Ga0207652_10009181 3300025921 Bacteria 7958
103 Ga0207706_10000138 3300025933 Bacteria 79643
104 Ga0207704_10000015 3300025938 Bacteria 163572
105 Ga0207691_10006843 3300025940 Bacteria 11002
106 Ga0207689_10018446 3300025942 Bacteria 5889
107 Ga0207667_10011040 3300025949 Bacteria 10523
108 Ga0207667_10044820 3300025949 Bacteria 4686
109 Ga0207651_10007685 3300025960 Bacteria 5758
110 Ga0207712_10013972 3300025961 Bacteria 5153
111 Ga0207639_10016233 3300026041 Bacteria 5263
112 Ga0207678_10015340 3300026067 Bacteria 6739
113 Ga0207648_10000888 3300026089 Bacteria 33713
114 Ga0207648_10002861 3300026089 Bacteria 18263
115 Ga0207648_10003712 3300026089 Bacteria 15982
116 Ga0207674_10002149 3300026116 Bacteria 24925
117 Ga0207674_10020509 3300026116 Bacteria 7139
118 Ga0207674_10042104 3300026116 Bacteria 4720
119 Ga0207683_10001922 3300026121 Bacteria 18390
120 Ga0207698_10002805 3300026142 Bacteria 10410
121 Ga0207698_10005915 3300026142 Bacteria 7602
122 Ga0268266_10000098 3300028379 Bacteria 182784
123 Ga0268264_10003096 3300028381 Bacteria 14395
124 Ga0268264_10014543 3300028381 Bacteria 6465
125 Ga0307517_10000914 3300028786 Bacteria 50058
126 Ga0307517_10001604 3300028786 Bacteria 37610
127 Ga0307515_10000157 3300028794 Bacteria 165733
128 Ga0307509_10060022 3300031507 Bacteria 4022
129 Ga0307508_10003066 3300031616 Bacteria 17185
130 Ga0307412_10000004 3300031911 Bacteria 544053
131 Ga0307414_10004244 3300032004 Bacteria 7767
132 Ga0307510_10004763 3300033180 Bacteria 16053
133 Ga0395899_0000636 3300037312 Bacteria 36237
134 Ga0395899_0001891 3300037312 Bacteria 17277
135 Ga0395900_0001838 3300037418 Bacteria 24186
136 Ga0395900_0004493 3300037418 Bacteria 14767
137 Ga0395900_0026298 3300037418 Bacteria 5959
138 Ga0395898_0038850 3300037466 Bacteria 4714
139 Ga0395898_0089925 3300037466 Bacteria 2954
140 Ga0395905_0001634 3300037471 Bacteria 26593
141 Ga0395905_0006246 3300037471 Bacteria 12028
142 Ga0395901_0001041 3300038443 Bacteria 29939
143 Ga0395901_0019492 3300038443 Bacteria 6935
144 Ga0436361_0995481 3300039447 Bacteria 23100
145 Ga0453684_0018418 3300044712 Bacteria 10717
146 Ga0451576_0013417 3300045051 Bacteria 9168
147 Ga0495580_0059466 3300046472 Bacteria 2686
148 Ga0495631_0001962 3300046518 Bacteria 12054
149 Ga0495621_0009510 3300046539 Bacteria 2954
150 Ga0495672_0009306 3300047320 Bacteria 7134
151 Ga0495687_000233 3300047443 Bacteria 77056
152 Ga0495686_0000039 3300047472 Bacteria 304821
153 Ga0495686_0011200 3300047472 Bacteria 6328
154 Ga0501037_0061383 3300049573 Bacteria 2741
155 Ga0500651_0009624 3300053093 Bacteria 5756
156 Ga0500611_000095 3300053727 Bacteria 25265
157 2738762881 2738541284 Bacteria 5199923
158 2776614048 2775506987 Bacteria 5373360
159 2852623909 2852623160 Bacteria 4376875
160 2884794323 2884791551 Bacteria 8511252
161 2884937188 2884933994 Bacteria 4535041
162 2896088783 2896085136 Bacteria 6129793
163 2896114122 2896109856 Bacteria 7140722
164 Ga0157370_10000263
165 SwRhRL2b_contig_341942
166 rootH1_10072367
167 rootH2_10003167
168 rootH2_10004606
169 rootH2_10040443
170 JGI25160J50197_1001046
171 Ga0065714_10002431
172 Ga0065714_10002537
173 Ga0065704_10000254
174 Ga0065704_10074516
175 Ga0065704_10078326
176 Ga0070658_10000027
177 Ga0070676_10000794
178 Ga0070680_100048404
179 Ga0070660_100069751
180 Ga0070673_100011968
181 Ga0070673_100027411
182 Ga0070659_100081844
183 Ga0070663_100004151
184 Ga0070662_100000281
185 Ga0068867_100007858
186 Ga0068867_100016557
187 Ga0070698_100000842
188 Ga0070698_100009065
189 Ga0070698_100021251
190 Ga0070679_100057346
191 Ga0068853_100000502
192 Ga0070672_100028861
193 Ga0070665_100000178
194 Ga0068855_100029160
195 Ga0068855_100036755
196 Ga0068857_100049756
197 Ga0068852_100000186
198 Ga0068852_100000732
199 Ga0068859_100001033
200 Ga0068870_10009545
201 Ga0068860_100009410
202 Ga0068860_100012030
203 Ga0097621_100000917
204 Ga0097621_100053142
205 Ga0068871_100001037
206 Ga0075430_100006583
207 Ga0075430_100030197
208 Ga0075429_100022687
209 Ga0068865_100000129
210 Ga0097620_100001033
211 Ga0105240_10000095
212 Ga0105240_10000155
213 Ga0105240_10003959
214 Ga0105240_10004547
215 Ga0105240_10014544
216 Ga0105240_10039908
217 Ga0105240_10135316
218 Ga0105241_10004762
219 Ga0105241_10021843
220 Ga0105237_10014352
221 Ga0105238_10002422
222 Ga0105238_10006062
223 Ga0105249_10001655
224 Ga0105239_10000083
225 Ga0105239_10000640
226 Ga0105239_10057723
227 Ga0105239_10104466
228 Ga0105239_10111679
229 Ga0105246_10009960
230 Ga0157373_10000105
231 Ga0157373_10031747
232 Ga0157373_10077517
233 Ga0157371_10000510
234 Ga0157371_10002554
235 Ga0157371_10004436
236 Ga0157371_10018845
237 Ga0157370_10003105
238 Ga0157369_10000039
239 Ga0157374_10000003
240 Ga0157374_10005504
241 Ga0163162_10000008
242 Ga0163162_10001097
243 Ga0163162_10001371
244 Ga0157372_10000001
245 Ga0157372_10000896
246 Ga0157372_10001557
247 Ga0157372_10036443
248 Ga0157375_10021447
249 Ga0157375_10059892
250 Ga0182008_10000009
251 Ga0207426_1000052
252 Ga0207647_10001675
253 Ga0207645_10000099
254 Ga0207645_10003882
255 Ga0207705_10000053
256 Ga0207695_10000043
257 Ga0207695_10000165
258 Ga0207695_10007954
259 Ga0207695_10014999
260 Ga0207695_10035039
261 Ga0207671_10002330
262 Ga0207657_10026607
263 Ga0207657_10078746
264 Ga0207652_10009181
265 Ga0207706_10000138
266 Ga0207704_10000015
267 Ga0207691_10006843
268 Ga0207689_10018446
269 Ga0207667_10011040
270 Ga0207667_10044820
271 Ga0207651_10007685
272 Ga0207712_10013972
273 Ga0207639_10016233
274 Ga0207678_10015340
275 Ga0207648_10000888
276 Ga0207648_10002861
277 Ga0207648_10003712
278 Ga0207674_10002149
279 Ga0207674_10020509
280 Ga0207674_10042104
281 Ga0207683_10001922
282 Ga0207698_10002805
283 Ga0207698_10005915
284 Ga0268266_10000098
285 Ga0268264_10003096
286 Ga0268264_10014543
287 Ga0307517_10000914
288 Ga0307517_10001604
289 Ga0307515_10000157
290 Ga0307509_10060022
291 Ga0307508_10003066
292 Ga0307412_10000004
293 Ga0307414_10004244
294 Ga0307510_10004763
295 Ga0395899_0000636
296 Ga0395899_0001891
297 Ga0395900_0001838
298 Ga0395900_0004493
299 Ga0395900_0026298
300 Ga0395898_0038850
301 Ga0395898_0089925
302 Ga0395905_0001634
303 Ga0395905_0006246
304 Ga0395901_0001041
305 Ga0395901_0019492
306 Ga0436361_0995481
307 Ga0453684_0018418
308 Ga0451576_0013417
309 Ga0495580_0059466
310 Ga0495631_0001962
311 Ga0495621_0009510
312 Ga0495672_0009306
313 Ga0495687_000233
314 Ga0495686_0000039
315 Ga0495686_0011200
316 Ga0501037_0061383
317 Ga0500651_0009624
318 Ga0500611_000095
319 2738762881
320 2776614048
321 2852623909
322 2884794323
323 2884937188
324 2896088783
325 2896114122

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01011

PQQ

PQQ enzyme repeat

332

362

0.92

PF13442

Cytochrome_CBB3

Cytochrome C oxidase, cbb3-type, subunit III

514

585

0.87

PF13360

PQQ_2

PQQ-like domain

631

738

0.82

PF00034

Cytochrom_C

Cytochrome c

516

589

0.69

Structural Annotation

Top 5 Hits

ID Description Score Start End
1c75-assembly1.cif.gz_A "0.97 a ""ab initio"" crystal structure of cytochrome c-553 from bacillus pasteurii" 0.855 507 575
1c75-assembly1.cif.gz_A "0.97 a ""ab initio"" crystal structure of cytochrome c-553 from bacillus pasteurii" 0.8026 507 575
1kb0-assembly1.cif.gz_A crystal structure of quinohemoprotein alcohol dehydrogenase from comamonas testosteroni 0.791 42 736
1kv9-assembly1.cif.gz_A structure at 1.9 a resolution of a quinohemoprotein alcohol dehydrogenase from pseudomonas putida hk5 0.7894 47 737
2zbo-assembly1.cif.gz_A crystal structure of low-redox-potential cytochrom c6 from brown alga hizikia fusiformis at 1.6 a resolution 0.7794 504 575
ID Description Score Start End Superfamily
1hzuA01 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.8821 503 574 1.10.760.10
1h9yB01 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.8582 503 574 1.10.760.10
af_P15877_153_794_2.140.10.10 Mainly Beta;8 Propeller;Methanol Dehydrogenase; Chain A;Quinoprotein alcohol dehydrogenase-like superfamily 0.8375 35 737 2.140.10.10
af_P15877_153_794_2.140.10.10 Mainly Beta;8 Propeller;Methanol Dehydrogenase; Chain A;Quinoprotein alcohol dehydrogenase-like superfamily 0.8325 35 737 2.140.10.10
af_Q9VLL0_923_1012_2.40.10.480 Mainly Beta;Beta Barrel;Thrombin, subunit H; 0.8264 669 719 2.40.10.480
ID Description Score Start End GO Terms
AF-A0A4Q5TTR5-F1-model_v4 Pyrroloquinoline quinone-dependent dehydrogenase 0.9771 613 737
AF-A0A522DWN8-F1-model_v4 C-type cytochrome 0.9658 411 737 GO:0009055
GO:0020037
GO:0046872
AF-A0A5C7Z3R5-F1-model_v4 PQQ-binding-like beta-propeller repeat protein 0.9652 270 737 GO:0009055
GO:0016491
GO:0020037
GO:0046872
AF-A0A4Q5TTR5-F1-model_v4 Pyrroloquinoline quinone-dependent dehydrogenase 0.962 613 737
AF-A0A2V9KVA4-F1-model_v4 Pyrroloquinoline quinone-dependent dehydrogenase 0.9601 69 737 GO:0008876
GO:0016020
GO:0048038

Map