F239607

General Info

Members Datasets Scaffolds Average Seq Length
162 127 127 385

Family's Representative Sequence

Representative Sequence 3300031456|Ga0307513_10121108|Ga0307513_101211082
Length 423
Sequence MRPCKYGARALLSLLGVACALQAGALQAAGNAGAEPGSPESGGSNLAMAANVSAAGSPPLALESLPPSRQRNGREIYESFRTGLADPTCDASATSTRWKKHFGHAPGQLARANDDLLPLFGYVVDALREADLPTEFALIPFVESGYKPGARSASGPAGLWQFIGVTARNHGVAMRGGYDGRLSPVDSTQAAVRYLKTLNGMFGGDWRLAVMGYNAGEYRILQSMRRAGMNAQNAKPEQLPGLSGITYAYVEKLHALACIFQQADDREEWLRTLDRDVPRLAAQALPGDVASLDEWAKRQGHDSAQLRRLNPALAAGFSRGGKPLRVLAPSGAGVAIAAGNHIAEIPALPAPTKSKSFQATALAASTNPQTTGSHTVRRGESAWTIARRYGLPPQQLLDRNGLASTAVLRPGMVLKLDSDAGGK

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2571042365 Lysobacter oryzae DSM 21044 Isolate Rhizosphere
3 2643221559 Lysobacter sp. Root559 Isolate Unclassified
4 2643221573 Lysobacter sp. Root604 Isolate Unclassified
5 2643221579 Pseudoxanthomonas sp. Root630 Isolate Unclassified
6 2643221586 Lysobacter sp. Root667 Isolate Unclassified
7 2643221593 Lysobacter sp. Root690 Isolate Unclassified
8 2643221612 Lysobacter sp. Root76 Isolate Unclassified
9 2643221695 Lysobacter sp. Root494 Isolate Unclassified
10 2643221720 Lysobacter sp. Root916 Isolate Unclassified
11 2643221727 Lysobacter sp. Root96 Isolate Unclassified
12 2643221728 Lysobacter sp. Root983 Isolate Unclassified
13 2747842428 Stenotrophomonas sp. WCS2014-113 Isolate Unclassified
14 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
15 2765235840 Stenotrophomonas maltophilia AA1 Isolate Unclassified
16 2816332141 Stenotrophomonas muris 1190 (v2) (version 2) Isolate Unclassified
17 2818991457 Xanthomonas translucens 569 Isolate Unclassified
18 2842391507 Stenotrophomonas maltophilia SEMIA 4027 Isolate Nodule
19 2852684882 Xanthomonas sp. JAI131 Isolate Rhizosphere
20 2874220319 Stenotrophomonas maltophilia PS5 Isolate Unclassified
21 2919089067 Stenotrophomonas sp. 1337 Isolate Rhizosphere
22 2919130084 Xanthomonas sp. 1678 Isolate Rhizosphere
23 2923516293 Pseudoxanthomonas mexicana SLBN-89 Isolate Rhizosphere
24 2928496128 Stenotrophomonas indicatrix 1163 Isolate Unclassified
25 2929195423 Xanthomonas sp. R-73098 Hybrid assembly Isolate Unclassified
26 2931380184 Stenotrophomonas sp. DR822 Isolate Rhizosphere
27 2937610967 Stenotrophomonas maltophilia EP20 Isolate Unclassified
28 2939626828 Stenotrophomonas sp. 2694 Isolate Rhizosphere
29 2941489479 Lysobacter enzymogenes 2943 Isolate Rhizosphere
30 2961047084 Stenotrophomonas maltophilia EP5 Isolate Unclassified
31 2987605356 Stenotrophomonas sp. ATCM1_4 Isolate Unclassified
32 2995948881 Lysobacter enzymogenes B25 Isolate Unclassified
33 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
34 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
35 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
36 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
37 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
38 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
39 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
40 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
41 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
42 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
43 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
44 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
45 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
46 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
47 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
48 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
49 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
50 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
51 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
52 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
53 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
54 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
55 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
56 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
57 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
58 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
59 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
60 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
61 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
64 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
66 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
68 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
69 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
80 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
81 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
82 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
83 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
84 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
85 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
86 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
87 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
88 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
89 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
90 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
91 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
92 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
93 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
94 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
95 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
96 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
97 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
98 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
99 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
100 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
101 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
102 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
103 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
104 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
105 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
106 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
107 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
108 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
109 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
110 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
111 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
112 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
113 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
114 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
115 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
116 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
117 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
118 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
119 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
120 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
121 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
123 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
124 8002869464 Pseudoxanthomonas helianthi 110414 Isolate Unclassified
125 8021622325 Xanthomonas sp. LMG12462 Isolate Rhizosphere
126 8021626552 Xanthomonas sp. LMG12460 Isolate Rhizosphere
127 8021648035 Xanthomonas sp. LMG 12461 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 78.4
Metatranscriptomes 0
Isolates 21.6

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.52
Nodule 0.62
Rhizoplane 3.7
Rhizosphere 48.15
Stem 0
Stem Tuber 0
Unclassified 29.01

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_3539220 2162886007 Bacteria 4103
2 JGI25152J39213_1000027 3300002773 Bacteria 101064
3 JGI25152J39213_1000094 3300002773 Bacteria 62510
4 JGI25150J39212_1000069 3300002774 Bacteria 62349
5 JGI25150J39212_1000329 3300002774 Bacteria 23313
6 JGI25151J46595_10000091 3300003187 Bacteria 122600
7 JGI25151J46595_10000818 3300003187 Bacteria 24780
8 JGI25153J46596_10000401 3300003215 Bacteria 28990
9 rootH2_10004381 3300003320 Bacteria 5521
10 rootH1_10043594 3300003323 Bacteria 3737
11 Ga0055526_1000145 3300003771 Bacteria 62400
12 Ga0055537_1000551 3300003773 Bacteria 21389
13 Ga0055524_1000211 3300003775 Bacteria 62400
14 Ga0055536_1010179 3300003781 Bacteria 3770
15 Ga0055534_1000107 3300003784 Bacteria 62400
16 Ga0055528_1000027 3300003790 Bacteria 126420
17 Ga0058692_1000064 3300003856 Bacteria 90988
18 Ga0058692_1000115 3300003856 Bacteria 52582
19 Ga0065704_10070867 3300005289 Bacteria 15240
20 Ga0070670_100000395 3300005331 Bacteria 35994
21 Ga0070668_100002732 3300005347 Bacteria 12982
22 Ga0070668_100025234 3300005347 Bacteria 4505
23 Ga0070669_100057452 3300005353 Bacteria 2855
24 Ga0070669_100123271 3300005353 Bacteria 1980
25 Ga0070678_100082407 3300005456 Bacteria 2442
26 Ga0070672_100008098 3300005543 Bacteria 7181
27 Ga0105251_10000063 3300009011 Bacteria 101276
28 Ga0105242_10059213 3300009176 Bacteria 3141
29 Ga0157373_10177133 3300013100 Bacteria 1501
30 Ga0157371_10047340 3300013102 Bacteria 3057
31 Ga0157369_10161913 3300013105 Bacteria 2362
32 Ga0182005_1002903 3300015265 Bacteria 5962
33 Ga0163161_10021491 3300017792 Bacteria 4534
34 Ga0207425_1000400 3300025245 Bacteria 29226
35 Ga0207425_1008800 3300025245 Bacteria 2555
36 Ga0209129_1000011 3300025258 Bacteria 568657
37 Ga0209565_1000005 3300025263 Bacteria 947317
38 Ga0209673_1000011 3300025273 Bacteria 586604
39 Ga0209675_1000004 3300025291 Bacteria 947166
40 Ga0209676_1000034 3300025292 Bacteria 460125
41 Ga0209676_1000037 3300025292 Bacteria 457562
42 Ga0209025_1000002 3300025294 Bacteria 1393142
43 Ga0209025_1000884 3300025294 Bacteria 46917
44 Ga0209025_1009725 3300025294 Bacteria 6646
45 Ga0209564_1000018 3300025295 Bacteria 586913
46 Ga0209758_1000003 3300025297 Bacteria 1398533
47 Ga0209758_1004384 3300025297 Bacteria 11787
48 Ga0209256_1000021 3300025299 Bacteria 537097
49 Ga0209257_1005493 3300025304 Bacteria 8860
50 Ga0207681_10034242 3300025923 Bacteria 3338
51 Ga0207650_10004431 3300025925 Bacteria 9594
52 Ga0207650_10036949 3300025925 Bacteria 3556
53 Ga0207709_10000920 3300025935 Bacteria 22175
54 Ga0207691_10001528 3300025940 Bacteria 23015
55 Ga0207668_10006720 3300025972 Bacteria 6805
56 Ga0207668_10083404 3300025972 Bacteria 2325
57 Ga0207683_10111738 3300026121 Bacteria 2447
58 Ga0209371_1000004 3300027312 Bacteria 1098197
59 Ga0209371_1000044 3300027312 Bacteria 327086
60 Ga0268266_10273685 3300028379 Bacteria 1568
61 Ga0268265_10083320 3300028380 Bacteria 2532
62 Ga0268256_1000005 3300030500 Bacteria 1082342
63 Ga0268256_1000046 3300030500 Bacteria 327003
64 Ga0314311_1178497 3300030733 Bacteria 2503
65 Ga0307513_10019977 3300031456 Bacteria 7955
66 Ga0307513_10121108 3300031456 Bacteria 2583
67 Ga0307406_10000838 3300031901 Bacteria 17266
68 Ga0307412_10014104 3300031911 Bacteria 4705
69 Ga0307412_10187669 3300031911 Bacteria 1560
70 Ga0307409_100078036 3300031995 Bacteria 2662
71 Ga0307414_10000300 3300032004 Bacteria 28812
72 Ga0307414_10008087 3300032004 Bacteria 5942
73 Ga0307414_10032918 3300032004 Bacteria 3419
74 Ga0307411_10035865 3300032005 Bacteria 3102
75 Ga0307411_10061526 3300032005 Bacteria 2499
76 Ga0237819_00175 3300038705 Bacteria 23838
77 Ga0439436_0002357 3300041404 Bacteria 5658
78 Ga0439436_0006248 3300041404 Bacteria 3657
79 Ga0439439_0000368 3300041406 Bacteria 7383
80 Ga0439447_001788 3300041407 Bacteria 7884
81 Ga0439461_0007631 3300041410 Bacteria 1922
82 Ga0439465_0001103 3300041413 Bacteria 8653
83 Ga0451791_1512663 3300041451 Bacteria 1474
84 Ga0451793_1468787 3300041452 Bacteria 1776
85 Ga0451797_1079696 3300041453 Bacteria 1679
86 Ga0451807_1896401 3300041486 Bacteria 1426
87 Ga0451843_1263711 3300041509 Bacteria 2113
88 Ga0439432_036953 3300042006 Bacteria 1561
89 Ga0439449_0000045 3300042007 Bacteria 38264
90 Ga0439449_0003751 3300042007 Bacteria 5890
91 Ga0439449_0030999 3300042007 Bacteria 1993
92 Ga0439449_0045350 3300042007 Bacteria 1629
93 Ga0439434_0045041 3300042435 Bacteria 1360
94 Ga0495638_0022323 3300046460 Bacteria 4156
95 Ga0495663_0000269 3300046525 Bacteria 19924
96 Ga0495598_0000225 3300046537 Bacteria 10007
97 Ga0495621_0005388 3300046539 Bacteria 3674
98 Ga0495656_0058752 3300046615 Bacteria 1670
99 Ga0495668_0008198 3300046616 Bacteria 6559
100 Ga0495636_0003043 3300047318 Bacteria 6496
101 Ga0495636_0016878 3300047318 Bacteria 2919
102 Ga0495636_0028466 3300047318 Bacteria 2279
103 Ga0495686_0010233 3300047472 Bacteria 6680
104 Ga0496113_0012152 3300048916 Bacteria 5777
105 Ga0496114_0008281 3300048917 Bacteria 8236
106 Ga0496116_0030479 3300048919 Bacteria 3873
107 Ga0496117_0000948 3300048920 Bacteria 44319
108 Ga0496117_0034163 3300048920 Bacteria 3836
109 Ga0496118_0039435 3300048921 Bacteria 3768
110 Ga0496118_0047890 3300048921 Bacteria 3309
111 Ga0496118_0066422 3300048921 Bacteria 2632
112 Ga0496118_0116899 3300048921 Bacteria 1751
113 Ga0496119_0000981 3300048922 Bacteria 36677
114 Ga0496120_0002355 3300048923 Bacteria 19411
115 Ga0496122_0000928 3300048925 Bacteria 53465
116 Ga0496122_0001557 3300048925 Bacteria 36316
117 Ga0496122_0026041 3300048925 Bacteria 5060
118 Ga0496123_0000150 3300048926 Bacteria 142879
119 Ga0496123_0000695 3300048926 Bacteria 55320
120 Ga0496124_0003422 3300048927 Bacteria 19462
121 Ga0496124_0210925 3300048927 Bacteria 1469
122 Ga0496125_0076769 3300048928 Bacteria 2578
123 Ga0496126_0019706 3300048929 Bacteria 6638
124 Ga0501034_0000598 3300049571 Bacteria 56882
125 Ga0501034_0023235 3300049571 Bacteria 6318
126 Ga0501266_004367 3300049763 Bacteria 1750
127 Ga0500634_0000354 3300053161 Bacteria 14595

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031901 Ga0307406_10000838 Ga0307406_1000083810 334
2 3300003856 Ga0058692_1000115 Ga0058692_100011542 335
3 3300027312 Ga0209371_1000044 Ga0209371_100004442 335
4 3300030500 Ga0268256_1000046 Ga0268256_100004642 335
5 3300049763 Ga0501266_004367 Ga0501266_004367_502_1731 336
6 3300005331 Ga0070670_100000395 Ga0070670_1000003953 338
7 3300005353 Ga0070669_100123271 Ga0070669_1001232712 338
8 3300009011 Ga0105251_10000063 Ga0105251_1000006313 338
9 3300025923 Ga0207681_10034242 Ga0207681_100342425 338
10 3300025925 Ga0207650_10004431 Ga0207650_1000443110 338
11 3300048920 Ga0496117_0000948 Ga0496117_0000948_7028_8248 338
12 3300048921 Ga0496118_0039435 Ga0496118_0039435_1998_3218 338
13 3300048922 Ga0496119_0000981 Ga0496119_0000981_28418_29638 338
14 3300048923 Ga0496120_0002355 Ga0496120_0002355_7011_8231 338
15 3300048925 Ga0496122_0000928 Ga0496122_0000928_5234_6454 338
16 3300048926 Ga0496123_0000695 Ga0496123_0000695_7089_8309 338
17 3300048927 Ga0496124_0003422 Ga0496124_0003422_11301_12521 338
18 3300003187 JGI25151J46595_10000818 JGI25151J46595_100008183 339
19 3300025245 Ga0207425_1008800 Ga0207425_10088002 339
20 3300025294 Ga0209025_1000884 Ga0209025_100088421 339
21 3300025297 Ga0209758_1004384 Ga0209758_10043842 339
22 3300041404 Ga0439436_0002357 Ga0439436_0002357_3358_4623 340
23 3300041406 Ga0439439_0000368 Ga0439439_0000368_2654_3919 340
24 3300047318 Ga0495636_0016878 Ga0495636_0016878_886_2157 340
25 3300048925 Ga0496122_0001557 Ga0496122_0001557_4546_5733 340
26 3300048926 Ga0496123_0000150 Ga0496123_0000150_4550_5737 340
27 3300032005 Ga0307411_10035865 Ga0307411_100358653 341
28 3300025925 Ga0207650_10036949 Ga0207650_100369492 342
29 3300041410 Ga0439461_0007631 Ga0439461_0007631_634_1863 342
30 3300009176 Ga0105242_10059213 Ga0105242_100592133 344
31 3300015265 Ga0182005_1002903 Ga0182005_10029032 344
32 3300032004 Ga0307414_10032918 Ga0307414_100329183 344
33 3300041404 Ga0439436_0006248 Ga0439436_0006248_2060_3370 344
34 3300041407 Ga0439447_001788 Ga0439447_001788_3626_4972 344
35 3300048921 Ga0496118_0047890 Ga0496118_0047890_2041_3267 344
36 3300046616 Ga0495668_0008198 Ga0495668_0008198_3009_4286 345
37 3300047318 Ga0495636_0003043 Ga0495636_0003043_2912_4168 346
38 3300028380 Ga0268265_10083320 Ga0268265_100833202 347
39 3300046537 Ga0495598_0000225 Ga0495598_0000225_6713_7831 347
40 3300046539 Ga0495621_0005388 Ga0495621_0005388_107_1225 347
41 3300025294 Ga0209025_1009725 Ga0209025_10097254 348
42 3300048921 Ga0496118_0116899 Ga0496118_0116899_129_1313 350
43 3300031995 Ga0307409_100078036 Ga0307409_1000780362 351
44 3300046615 Ga0495656_0058752 Ga0495656_0058752_327_1460 352
45 3300047318 Ga0495636_0028466 Ga0495636_0028466_246_1508 352
46 3300005347 Ga0070668_100002732 Ga0070668_10000273210 353
47 3300025972 Ga0207668_10083404 Ga0207668_100834042 353
48 3300031911 Ga0307412_10187669 Ga0307412_101876692 353
49 3300038705 Ga0237819_00175 Ga0237819_00175_12725_13957 353
50 3300042006 Ga0439432_036953 Ga0439432_036953_259_1503 353
51 3300005353 Ga0070669_100057452 Ga0070669_1000574523 354
52 3300005543 Ga0070672_100008098 Ga0070672_1000080987 354
53 3300025304 Ga0209257_1005493 Ga0209257_10054938 354
54 3300025940 Ga0207691_10001528 Ga0207691_100015285 354
55 3300042435 Ga0439434_0045041 Ga0439434_0045041_70_1311 354
56 iso_pu_bacteria 2643221593 2643975751 354
57 3300003771 Ga0055526_1000145 Ga0055526_100014521 355
58 3300003773 Ga0055537_1000551 Ga0055537_10005516 355
59 3300003775 Ga0055524_1000211 Ga0055524_100021142 355
60 3300003784 Ga0055534_1000107 Ga0055534_100010742 355
61 3300003790 Ga0055528_1000027 Ga0055528_100002787 355
62 3300025263 Ga0209565_1000005 Ga0209565_1000005417 355
63 3300025273 Ga0209673_1000011 Ga0209673_100001172 355
64 3300025291 Ga0209675_1000004 Ga0209675_1000004417 355
65 3300025295 Ga0209564_1000018 Ga0209564_100001872 355
66 3300025299 Ga0209256_1000021 Ga0209256_100002120 355
67 3300032005 Ga0307411_10061526 Ga0307411_100615262 355
68 3300048916 Ga0496113_0012152 Ga0496113_0012152_50_1327 355
69 iso_pu_bacteria 2571042365 2572255313 355
70 iso_pu_bacteria 2643221695 2644529906 355
71 iso_pu_bacteria 2995948881 2995952517 355
72 3300031456 Ga0307513_10019977 Ga0307513_100199777 358
73 3300042007 Ga0439449_0030999 Ga0439449_0030999_124_1326 358
74 3300049571 Ga0501034_0023235 Ga0501034_0023235_2709_3890 358
75 iso_pu_bacteria 2941489479 2941493385 358
76 3300032004 Ga0307414_10000300 Ga0307414_100003002 359
77 3300032004 Ga0307414_10008087 Ga0307414_100080872 359
78 3300047472 Ga0495686_0010233 Ga0495686_0010233_3161_4399 359
79 iso_pu_bacteria 2643221573 2643878338 359
80 iso_pu_bacteria 2643221720 2644659643 359
81 iso_pu_bacteria 2643221728 2644700612 359
82 3300013100 Ga0157373_10177133 Ga0157373_101771332 361
83 3300048917 Ga0496114_0008281 Ga0496114_0008281_4563_5747 361
84 3300048929 Ga0496126_0019706 Ga0496126_0019706_857_2041 361
85 3300005347 Ga0070668_100025234 Ga0070668_1000252345 362
86 3300005456 Ga0070678_100082407 Ga0070678_1000824072 362
87 3300013102 Ga0157371_10047340 Ga0157371_100473401 362
88 3300025292 Ga0209676_1000037 Ga0209676_1000037430 362
89 3300025972 Ga0207668_10006720 Ga0207668_100067209 362
90 3300026121 Ga0207683_10111738 Ga0207683_101117382 362
91 3300028379 Ga0268266_10273685 Ga0268266_102736851 362
92 3300048920 Ga0496117_0034163 Ga0496117_0034163_223_1425 362
93 3300048921 Ga0496118_0066422 Ga0496118_0066422_288_1490 362
94 3300013105 Ga0157369_10161913 Ga0157369_101619132 363
95 3300025935 Ga0207709_10000920 Ga0207709_100009201 363
96 3300048927 Ga0496124_0210925 Ga0496124_0210925_50_1252 363
97 iso_pu_bacteria 2747842501 2748018029 363
98 iso_pu_bacteria 2987605356 2987607955 364
99 3300041451 Ga0451791_1512663 Ga0451791_1512663_79_1305 366
100 3300041452 Ga0451793_1468787 Ga0451793_1468787_405_1631 366
101 3300041509 Ga0451843_1263711 Ga0451843_1263711_376_1602 366
102 3300041453 Ga0451797_1079696 Ga0451797_1079696_347_1561 367
103 3300048928 Ga0496125_0076769 Ga0496125_0076769_59_1276 367
104 3300053161 Ga0500634_0000354 Ga0500634_0000354_2749_3975 367
105 3300002773 JGI25152J39213_1000027 JGI25152J39213_100002715 368
106 3300002773 JGI25152J39213_1000094 JGI25152J39213_100009466 368
107 3300002774 JGI25150J39212_1000069 JGI25150J39212_100006966 368
108 3300002774 JGI25150J39212_1000329 JGI25150J39212_100032916 368
109 3300003187 JGI25151J46595_10000091 JGI25151J46595_1000009116 368
110 3300003215 JGI25153J46596_10000401 JGI25153J46596_1000040119 368
111 3300003856 Ga0058692_1000064 Ga0058692_100006486 368
112 3300025245 Ga0207425_1000400 Ga0207425_100040016 368
113 3300025258 Ga0209129_1000011 Ga0209129_1000011512 368
114 3300025294 Ga0209025_1000002 Ga0209025_1000002286 368
115 3300025297 Ga0209758_1000003 Ga0209758_1000003293 368
116 3300027312 Ga0209371_1000004 Ga0209371_1000004937 368
117 3300030500 Ga0268256_1000005 Ga0268256_1000005110 368
118 3300030733 Ga0314311_1178497 Ga0314311_11784971 368
119 3300048919 Ga0496116_0030479 Ga0496116_0030479_273_1475 368
120 iso_pu_bacteria 2747842428 2747947815 368
121 iso_pu_bacteria 2765235840 2765577886 368
122 iso_pu_bacteria 2816332141 2816515942 368
123 iso_pu_bacteria 2842391507 2842394265 368
124 iso_pu_bacteria 2874220319 2874220482 368
125 iso_pu_bacteria 2919089067 2919091752 368
126 iso_pu_bacteria 2928496128 2928498573 368
127 iso_pu_bacteria 2931380184 2931381861 368
128 iso_pu_bacteria 2937610967 2937611374 368
129 iso_pu_bacteria 2939626828 2939629872 368
130 iso_pu_bacteria 2961047084 2961047247 368
131 iso_pu_bacteria 8021622325 8021622411 368
132 iso_pu_bacteria 8021626552 8021630299 368
133 iso_pu_bacteria 8021648035 8021648197 368
134 3300017792 Ga0163161_10021491 Ga0163161_100214912 369
135 3300048925 Ga0496122_0026041 Ga0496122_0026041_633_1841 369
136 iso_pu_bacteria 2818991457 2819660541 369
137 iso_pu_bacteria 2852684882 2852688925 369
138 iso_pu_bacteria 2919130084 2919130182 369
139 iso_pu_bacteria 2929195423 2929198818 369
140 3300003320 rootH2_10004381 rootH2_100043813 370
141 3300003323 rootH1_10043594 rootH1_100435941 370
142 3300031911 Ga0307412_10014104 Ga0307412_100141047 370
143 iso_pu_bacteria 8002869464 8002872449 372
144 3300041486 Ga0451807_1896401 Ga0451807_1896401_15_1241 373
145 3300049571 Ga0501034_0000598 Ga0501034_0000598_6235_7407 373
146 iso_pu_bacteria 2923516293 2923518869 373
147 3300041413 Ga0439465_0001103 Ga0439465_0001103_5118_6362 374
148 3300042007 Ga0439449_0000045 Ga0439449_0000045_6584_7828 374
149 3300046460 Ga0495638_0022323 Ga0495638_0022323_2191_3444 375
150 iso_pu_bacteria 2643221579 2643908203 376
151 3300003781 Ga0055536_1010179 Ga0055536_10101793 377
152 3300025292 Ga0209676_1000034 Ga0209676_1000034205 377
153 3300031456 Ga0307513_10121108 Ga0307513_101211082 377
154 3300042007 Ga0439449_0003751 Ga0439449_0003751_682_1881 377
155 3300042007 Ga0439449_0045350 Ga0439449_0045350_286_1542 377
156 3300046525 Ga0495663_0000269 Ga0495663_0000269_12673_13932 377
157 iso_pu_bacteria 2643221559 2643818683 378
158 iso_pu_bacteria 2643221586 2643940934 378
159 iso_pu_bacteria 2643221612 2644080024 378
160 iso_pu_bacteria 2643221727 2644695619 378
161 2162886007 SwRhRL2b_contig_3539220 SwRhRL2b_0716.00009570 379
162 3300005289 Ga0065704_10070867 Ga0065704_1007086711 379

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01476

LysM

LysM domain

374

417

0.98

PF01464

SLT

Transglycosylase SLT domain

124

235

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
4uz3-assembly3.cif.gz_C crystal structure of the n-terminal lysm domains from the putative nlpc/p60 d,l endopeptidase from t. thermophilus bound to n-acetyl-chitohexaose 0.9389 330 376
4uz3-assembly3.cif.gz_C crystal structure of the n-terminal lysm domains from the putative nlpc/p60 d,l endopeptidase from t. thermophilus bound to n-acetyl-chitohexaose 0.9016 330 376
5c8q-assembly1.cif.gz_B crystal structure of mocvnh3 variant (mo0v) in complex with (n-glcnac)4 0.8792 329 377
4xcm-assembly1.cif.gz_A crystal structure of the putative nlpc/p60 d,l endopeptidase from t. thermophilus 0.8707 330 379
2l9y-assembly1.cif.gz_A solution structure of the mocvnh-lysm module from the rice blast fungus magnaporthe oryzae protein (mgg_03307) 0.8647 328 373
ID Description Score Start End Superfamily
4uz3C00 Alpha Beta;Roll;Membrane-bound Lytic Murein Transglycosylase D; Chain A;LysM domain 0.9389 330 376 3.10.350.10
5c8qB02 Alpha Beta;Roll;Membrane-bound Lytic Murein Transglycosylase D; Chain A;LysM domain 0.9227 330 374 3.10.350.10
4uz3C00 Alpha Beta;Roll;Membrane-bound Lytic Murein Transglycosylase D; Chain A;LysM domain 0.9016 330 376 3.10.350.10
5c8qB02 Alpha Beta;Roll;Membrane-bound Lytic Murein Transglycosylase D; Chain A;LysM domain 0.8859 330 374 3.10.350.10
af_P0AEZ7_97_250_1.10.530.10 Mainly Alpha;Orthogonal Bundle;Lysozyme; 0.8738 97 245 1.10.530.10
ID Description Score Start End GO Terms
AF-A0A0A0M3E7-F1-model_v4 Lytic transglycosylase 0.8786 22 300 GO:0000270
GO:0008933
GO:0016020
AF-A0A7X0QP88-F1-model_v4 Lytic transglycosylase domain-containing protein 0.8605 28 326 GO:0000270
GO:0008933
GO:0016020
AF-A0A7X0QP88-F1-model_v4 Lytic transglycosylase domain-containing protein 0.8576 28 326 GO:0000270
GO:0008933
GO:0016020
AF-A0A0A0M3E7-F1-model_v4 Lytic transglycosylase 0.8404 22 300 GO:0000270
GO:0008933
GO:0016020
AF-A0A2K1PZT0-F1-model_v4 Transglycosylase SLT domain-containing protein 0.8174 30 269 GO:0000270
GO:0008933
GO:0016020

Feature Viewer

pLDDT pTM Quality
79.51 0.7 High
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Predicted Structure (AlphaFold2)

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