F242153

General Info

Members Datasets Scaffolds Average Seq Length
163 126 151 514

Family's Representative Sequence

Representative Sequence 3300041407|Ga0439447_005073|Ga0439447_005073_989_2692
Length 567
Sequence MNIDHANGLSRRIFVKSLARAAVAPRLAWAGIRPDTISSANARQYRENNSMLKILAATTALFLSLSAGAATAATLQAKATLQADKPGPRINRNLYGQFSEHLGGGIYDGIWVGENSPIPNVRGIRTDVVEALKAIKTPMVRWPGGCFADEYLWRDGIGPRDQRPVRKNNWWGGAAETNAFGTHEFMDFVEQIGAEAYISINVGSSTPTYMREWIEYMTSPGQDTLARERRKNGRDKPWKVALWGIGNESWGCGGNMTPEYYANELRRFGSFFHQGEDNPGLRVATGPNSDETRWTEVLMKDASQAMDALSLHYYTLPTGDWKTKGAAIGFTQQEWVDTFAQTLKMDDFIKRHSAIMDTYDPKKRVGLYVDEWGTWYDVEKGTNPSYLYQQNTLRDAVLAAANFNIFHQHADRVRMTSVAQTINVLQAMILTDGGKMALTPTYHAFKMYVPFQDATSLPLELTTPNFSAGGKTIPAINASAARAKDGRIFIGIANMDPQDRVELDIDLGAVKAKAVSGEVLTADRTDAHNVPGQPATIAPMPYSGGRIGQGRLVLDIPAKSVVVVRLD

Samples

Sample ID Description Type Environment
1 2510917020 Caulobacter sp. AP07 Isolate Rhizosphere
2 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
3 2585428106 Caulobacter sp. OV484 Isolate Rhizosphere
4 2643221583 Caulobacter sp. Root655 Isolate Unclassified
5 2643221640 Caulobacter sp. Root342 Isolate Unclassified
6 2643221642 Caulobacter sp. Root343 Isolate Unclassified
7 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
8 2857564685 Duganella sp. R-74599 Isolate Unclassified
9 2886848708 Mitsuaria sp. TWR114 Isolate Rhizosphere
10 2919138771 Novosphingobium sp. 1748 Isolate Rhizosphere
11 2928531327 Caulobacter sp. 1776 Isolate Rhizosphere
12 3000865235 Altericroceibacterium indicum DSM 18604 Isolate Rhizosphere
13 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
14 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
15 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
16 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
17 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
18 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
19 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
20 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
21 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
22 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
23 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
24 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
25 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
26 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
27 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
28 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
29 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
30 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
31 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
32 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
33 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
34 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
35 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
36 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
37 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
38 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
39 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
40 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
41 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
43 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
44 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
45 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300012497 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 Metagenome Rhizosphere
48 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
49 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
50 3300015684 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.2_F02 Metagenome Unclassified
51 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
52 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
56 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
75 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
76 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
77 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
78 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
79 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
80 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
81 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
82 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
83 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
84 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
85 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
86 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
87 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
88 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
89 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
90 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
91 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
92 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
93 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
94 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
95 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
96 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
97 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
98 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
99 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
100 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
101 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
102 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
103 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
104 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
105 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
106 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
107 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
108 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
109 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
110 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
111 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
112 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
113 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
114 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
115 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
116 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
121 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
122 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
123 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
124 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
125 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
126 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.64
Metatranscriptomes 0
Isolates 7.36

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.47
Nodule 1.23
Rhizoplane 0
Rhizosphere 65.64
Stem 0
Stem Tuber 0
Unclassified 11.66

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25156J39149_1000026 3300002705 Bacteria 132099
2 rootH1_10007120 3300003316 Bacteria 9742
3 rootH1_10022264 3300003316 Bacteria 5053
4 rootH1_10017144 3300003323 Bacteria 12968
5 rootH1_10019567 3300003323 Bacteria 12236
6 Ga0055529_1000032 3300003763 Bacteria 255895
7 Ga0055526_1000053 3300003771 Bacteria 114820
8 Ga0055526_1005606 3300003771 Bacteria 7149
9 Ga0055537_1000191 3300003773 Bacteria 45803
10 Ga0055524_1000181 3300003775 Bacteria 71026
11 Ga0055524_1003872 3300003775 Bacteria 7098
12 Ga0055536_1000029 3300003781 Bacteria 157375
13 Ga0055536_1000057 3300003781 Bacteria 104652
14 Ga0055534_1000051 3300003784 Bacteria 92183
15 Ga0055528_1000731 3300003790 Bacteria 23155
16 Ga0055530_10000628 3300003791 Bacteria 30471
17 Ga0055531_10000053 3300003794 Bacteria 124623
18 Ga0055531_10001089 3300003794 Bacteria 21336
19 Ga0065165_1000666 3300005262 Bacteria 49564
20 Ga0065707_10082695 3300005295 Bacteria 12677
21 Ga0070676_10038746 3300005328 Bacteria 2754
22 Ga0070677_10002715 3300005333 Bacteria 5658
23 Ga0070677_10008684 3300005333 Bacteria 3426
24 Ga0070677_10018286 3300005333 Bacteria 2523
25 Ga0070680_100132701 3300005336 Bacteria 2084
26 Ga0070682_100044777 3300005337 Bacteria 2740
27 Ga0070675_100008846 3300005354 Bacteria 7827
28 Ga0070675_100104109 3300005354 Bacteria 2393
29 Ga0070674_100018285 3300005356 Bacteria 4428
30 Ga0070674_100033291 3300005356 Bacteria 3429
31 Ga0070673_100069279 3300005364 Bacteria 2827
32 Ga0070678_100162605 3300005456 Bacteria 1810
33 Ga0070685_10056088 3300005466 Bacteria 2290
34 Ga0070672_100128565 3300005543 Bacteria 2080
35 Ga0070672_100151510 3300005543 Bacteria 1918
36 Ga0068855_100036692 3300005563 Bacteria 5831
37 Ga0068870_10000939 3300005840 Bacteria 11434
38 Ga0081455_10002639 3300005937 Bacteria 21249
39 Ga0075366_10026592 3300006195 Bacteria 3390
40 Ga0097621_100001123 3300006237 Bacteria 18646
41 Ga0097621_100123395 3300006237 Bacteria 2199
42 Ga0068871_100000379 3300006358 Bacteria 31123
43 Ga0068865_100036655 3300006881 Bacteria 3307
44 Ga0079104_1003317 3300006946 Bacteria 7632
45 Ga0105240_10022764 3300009093 Bacteria 8300
46 Ga0114129_10052961 3300009147 Bacteria 5693
47 Ga0157319_1000048 3300012497 Bacteria 16986
48 Ga0163163_10000021 3300014325 Bacteria 191799
49 Ga0163163_10143224 3300014325 Bacteria 2433
50 Ga0157380_10033838 3300014326 Bacteria 3937
51 Ga0157380_10061538 3300014326 Bacteria 3004
52 Ga0183365_10006 3300015684 Bacteria 225936
53 Ga0209565_1000017 3300025263 Bacteria 462438
54 Ga0209673_1000007 3300025273 Bacteria 634477
55 Ga0209675_1000009 3300025291 Bacteria 562872
56 Ga0209676_1000031 3300025292 Bacteria 478976
57 Ga0209676_1000057 3300025292 Bacteria 361061
58 Ga0209564_1000036 3300025295 Bacteria 423455
59 Ga0209564_1000055 3300025295 Bacteria 343782
60 Ga0209050_1000087 3300025298 Bacteria 261460
61 Ga0209050_1000096 3300025298 Bacteria 240109
62 Ga0209256_1000075 3300025299 Bacteria 236149
63 Ga0209256_1000167 3300025299 Bacteria 133419
64 Ga0209256_1017372 3300025299 Bacteria 2393
65 Ga0209051_1003301 3300025303 Bacteria 10694
66 Ga0209257_1000050 3300025304 Bacteria 439325
67 Ga0209257_1000162 3300025304 Bacteria 175776
68 Ga0209257_1003560 3300025304 Bacteria 13220
69 Ga0207682_10001254 3300025893 Bacteria 11730
70 Ga0207682_10015377 3300025893 Bacteria 2979
71 Ga0207642_10019980 3300025899 Bacteria 2606
72 Ga0207645_10052450 3300025907 Bacteria 2606
73 Ga0207643_10002751 3300025908 Bacteria 9515
74 Ga0207671_10028640 3300025914 Bacteria 4161
75 Ga0207681_10126159 3300025923 Bacteria 1885
76 Ga0207686_10007763 3300025934 Bacteria 5782
77 Ga0207669_10076013 3300025937 Bacteria 2130
78 Ga0207691_10017066 3300025940 Bacteria 6887
79 Ga0207691_10187955 3300025940 Bacteria 1803
80 Ga0207689_10026610 3300025942 Bacteria 4846
81 Ga0207689_10059438 3300025942 Bacteria 3144
82 Ga0207651_10088250 3300025960 Bacteria 2260
83 Ga0207674_10028056 3300026116 Bacteria 5947
84 Ga0207675_100065417 3300026118 Bacteria 3398
85 Ga0207683_10010088 3300026121 Bacteria 8060
86 Ga0207683_10021633 3300026121 Bacteria 5511
87 Ga0207683_10041604 3300026121 Bacteria 4013
88 Ga0209281_1000052 3300027111 Bacteria 314741
89 Ga0265336_10000057 3300028666 Bacteria 105485
90 Ga0265338_10005431 3300028800 Bacteria 16635
91 Ga0265330_10014476 3300031235 Bacteria 3661
92 Ga0307513_10002605 3300031456 Bacteria 24924
93 Ga0307513_10013360 3300031456 Bacteria 10084
94 Ga0307513_10066466 3300031456 Bacteria 3788
95 Ga0307408_100002229 3300031548 Bacteria 13829
96 Ga0307408_100088701 3300031548 Bacteria 2330
97 Ga0307412_10121179 3300031911 Bacteria 1883
98 Ga0307416_100204399 3300032002 Bacteria 1877
99 Ga0307415_100169975 3300032126 Bacteria 1699
100 Ga0395905_0000091 3300037471 Bacteria 151747
101 Ga0395905_0026354 3300037471 Bacteria 5481
102 Ga0395905_0145515 3300037471 Bacteria 2230
103 Ga0439447_005073 3300041407 Bacteria 4427
104 Ga0439465_0000856 3300041413 Bacteria 9616
105 Ga0439459_0001225 3300042438 Bacteria 3754
106 Ga0466969_0000198 3300044656 Bacteria 32667
107 Ga0466966_0000166 3300044684 Bacteria 43290
108 Ga0453684_0017935 3300044712 Bacteria 10912
109 Ga0466971_0002520 3300044719 Bacteria 7750
110 Ga0466957_0087579 3300044842 Bacteria 1947
111 Ga0466959_0000146 3300045049 Bacteria 46290
112 Ga0451576_0003628 3300045051 Bacteria 20975
113 Ga0466958_0003710 3300045836 Bacteria 7972
114 Ga0495627_001720 3300046453 Bacteria 11949
115 Ga0495638_0005492 3300046460 Bacteria 9425
116 Ga0495638_0013373 3300046460 Bacteria 5590
117 Ga0495638_0060167 3300046460 Bacteria 2350
118 Ga0495653_0000002 3300046463 Bacteria 507262
119 Ga0495650_0000001 3300046471 Bacteria 1085492
120 Ga0495650_0011677 3300046471 Bacteria 4786
121 Ga0495584_0000057 3300046491 Bacteria 81182
122 Ga0495583_0000001 3300046506 Bacteria 811973
123 Ga0495606_0000563 3300046507 Bacteria 58807
124 Ga0495610_0025542 3300046512 Bacteria 3168
125 Ga0495637_0000042 3300046520 Bacteria 114979
126 Ga0495654_0000037 3300046530 Bacteria 188218
127 Ga0495668_0000018 3300046616 Bacteria 417480
128 Ga0495625_0005188 3300046660 Bacteria 12006
129 Ga0495625_0081028 3300046660 Bacteria 2259
130 Ga0495649_0004899 3300046694 Bacteria 8636
131 Ga0495589_0013312 3300046794 Bacteria 4245
132 Ga0495672_0000165 3300047320 Bacteria 96215
133 Ga0495673_0000039 3300047469 Bacteria 301943
134 Ga0495686_0002609 3300047472 Bacteria 16714
135 Ga0495686_0013702 3300047472 Bacteria 5620
136 Ga0496124_0014734 3300048927 Bacteria 7546
137 Ga0496124_0031992 3300048927 Bacteria 4653
138 Ga0496125_0051820 3300048928 Bacteria 3381
139 Ga0496126_0001089 3300048929 Bacteria 45707
140 Ga0495682_0005597 3300049460 Bacteria 5196
141 Ga0501034_0008177 3300049571 Bacteria 11093
142 Ga0501037_0042122 3300049573 Bacteria 3356
143 Ga0501047_0099617 3300049581 Bacteria 2785
144 Ga0501035_0005303 3300049822 Bacteria 12206
145 Ga0501044_0000114 3300049823 Bacteria 97697
146 nmdc:mga0k408_20240_c1 3300050493 Bacteria 3726
147 nmdc:mga08y16_167221_c1 3300050511 Bacteria 2284
148 Ga0500644_0014001 3300053088 Bacteria 2254
149 Ga0500608_000004 3300053122 Bacteria 108109
150 Ga0500622_0009463 3300053156 Bacteria 5391
151 Ga0466962_0058293 3300061719 Bacteria 1843

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2886848708 2886853530 446
2 3300006946 Ga0079104_1003317 Ga0079104_10033173 481
3 3300027111 Ga0209281_1000052 Ga0209281_10000522 481
4 3300003316 rootH1_10007120 rootH1_100071206 485
5 3300003323 rootH1_10019567 rootH1_1001956710 488
6 3300048929 Ga0496126_0001089 Ga0496126_0001089_41214_42710 488
7 3300003781 Ga0055536_1000029 Ga0055536_100002998 491
8 3300003791 Ga0055530_10000628 Ga0055530_100006283 491
9 3300025292 Ga0209676_1000057 Ga0209676_1000057181 491
10 3300025298 Ga0209050_1000096 Ga0209050_100009678 491
11 3300025303 Ga0209051_1003301 Ga0209051_10033015 491
12 3300025304 Ga0209257_1003560 Ga0209257_10035603 491
13 3300046616 Ga0495668_0000018 Ga0495668_0000018_292336_293856 492
14 3300053088 Ga0500644_0014001 Ga0500644_0014001_11_1531 492
15 3300053122 Ga0500608_000004 Ga0500608_000004_54755_56323 493
16 3300044656 Ga0466969_0000198 Ga0466969_0000198_24423_25946 494
17 3300044684 Ga0466966_0000166 Ga0466966_0000166_34550_36073 494
18 3300044719 Ga0466971_0002520 Ga0466971_0002520_6041_7564 494
19 3300044842 Ga0466957_0087579 Ga0466957_0087579_347_1870 494
20 3300045049 Ga0466959_0000146 Ga0466959_0000146_36288_37811 494
21 3300045836 Ga0466958_0003710 Ga0466958_0003710_5044_6567 494
22 3300025942 Ga0207689_10026610 Ga0207689_100266104 495
23 3300046660 Ga0495625_0005188 Ga0495625_0005188_7424_8953 495
24 3300046694 Ga0495649_0004899 Ga0495649_0004899_5712_7286 495
25 iso_pu_bacteria 2857564685 2857566930 495
26 3300003316 rootH1_10022264 rootH1_100222642 496
27 3300003323 rootH1_10017144 rootH1_100171444 496
28 3300003771 Ga0055526_1005606 Ga0055526_10056062 496
29 3300003773 Ga0055537_1000191 Ga0055537_100019136 496
30 3300003775 Ga0055524_1000181 Ga0055524_10001819 496
31 3300003775 Ga0055524_1003872 Ga0055524_10038724 496
32 3300003784 Ga0055534_1000051 Ga0055534_100005144 496
33 3300003790 Ga0055528_1000731 Ga0055528_100073111 496
34 3300005262 Ga0065165_1000666 Ga0065165_100066623 496
35 3300012497 Ga0157319_1000048 Ga0157319_100004810 496
36 3300025263 Ga0209565_1000017 Ga0209565_1000017219 496
37 3300025273 Ga0209673_1000007 Ga0209673_1000007210 496
38 3300025291 Ga0209675_1000009 Ga0209675_1000009308 496
39 3300025295 Ga0209564_1000036 Ga0209564_1000036210 496
40 3300025295 Ga0209564_1000055 Ga0209564_1000055243 496
41 3300025299 Ga0209256_1000075 Ga0209256_1000075175 496
42 3300025299 Ga0209256_1000167 Ga0209256_100016725 496
43 3300025304 Ga0209257_1000162 Ga0209257_100016281 496
44 3300031548 Ga0307408_100088701 Ga0307408_1000887012 496
45 3300042438 Ga0439459_0001225 Ga0439459_0001225_935_2467 496
46 3300005336 Ga0070680_100132701 Ga0070680_1001327012 497
47 3300005563 Ga0068855_100036692 Ga0068855_1000366924 497
48 3300028800 Ga0265338_10005431 Ga0265338_100054312 497
49 3300031235 Ga0265330_10014476 Ga0265330_100144763 497
50 3300026116 Ga0207674_10028056 Ga0207674_100280563 498
51 3300046453 Ga0495627_001720 Ga0495627_001720_716_2251 498
52 3300046460 Ga0495638_0060167 Ga0495638_0060167_735_2270 498
53 3300046471 Ga0495650_0011677 Ga0495650_0011677_731_2272 498
54 3300046512 Ga0495610_0025542 Ga0495610_0025542_1363_2898 498
55 3300046520 Ga0495637_0000042 Ga0495637_0000042_43487_45028 498
56 3300046530 Ga0495654_0000037 Ga0495654_0000037_93234_94775 498
57 3300047472 Ga0495686_0013702 Ga0495686_0013702_3716_5251 498
58 3300025914 Ga0207671_10028640 Ga0207671_100286403 499
59 3300046506 Ga0495583_0000001 Ga0495583_0000001_57991_59547 499
60 iso_pu_bacteria 2919138771 2919142212 499
61 3300006237 Ga0097621_100001123 Ga0097621_1000011232 500
62 3300006237 Ga0097621_100123395 Ga0097621_1001233951 500
63 3300006358 Ga0068871_100000379 Ga0068871_10000037916 500
64 3300014325 Ga0163163_10000021 Ga0163163_1000002122 500
65 3300025934 Ga0207686_10007763 Ga0207686_100077632 500
66 3300025942 Ga0207689_10059438 Ga0207689_100594382 500
67 3300003763 Ga0055529_1000032 Ga0055529_1000032224 501
68 3300003771 Ga0055526_1000053 Ga0055526_100005353 501
69 3300046463 Ga0495653_0000002 Ga0495653_0000002_461226_462776 501
70 iso_pu_bacteria 2585428106 2587916300 501
71 iso_pu_bacteria 2643221583 2643923988 501
72 iso_pu_bacteria 2643221640 2644226191 501
73 iso_pu_bacteria 2643221642 2644235679 501
74 iso_pu_bacteria 2857504554 2857508998 501
75 iso_pu_bacteria 2928531327 2928535043 501
76 3300003781 Ga0055536_1000057 Ga0055536_100005767 502
77 3300003794 Ga0055531_10000053 Ga0055531_1000005394 502
78 3300003794 Ga0055531_10001089 Ga0055531_100010892 502
79 3300005295 Ga0065707_10082695 Ga0065707_1008269510 502
80 3300006195 Ga0075366_10026592 Ga0075366_100265921 502
81 3300015684 Ga0183365_10006 Ga0183365_10006146 502
82 3300025292 Ga0209676_1000031 Ga0209676_1000031203 502
83 3300025298 Ga0209050_1000087 Ga0209050_100008769 502
84 3300025299 Ga0209256_1017372 Ga0209256_10173722 502
85 3300025304 Ga0209257_1000050 Ga0209257_1000050227 502
86 3300037471 Ga0395905_0000091 Ga0395905_0000091_96462_98009 502
87 3300037471 Ga0395905_0145515 Ga0395905_0145515_211_1761 502
88 3300046460 Ga0495638_0005492 Ga0495638_0005492_2120_3670 502
89 3300046471 Ga0495650_0000001 Ga0495650_0000001_482130_483683 502
90 3300046660 Ga0495625_0081028 Ga0495625_0081028_643_2211 502
91 3300046794 Ga0495589_0013312 Ga0495589_0013312_2163_3719 502
92 3300047469 Ga0495673_0000039 Ga0495673_0000039_143414_144970 502
93 3300048927 Ga0496124_0014734 Ga0496124_0014734_2330_3895 502
94 3300048928 Ga0496125_0051820 Ga0496125_0051820_139_1704 502
95 3300050493 nmdc:mga0k408_20240_c1 nmdc:mga0k408_20240_c1_35_1603 502
96 3300053156 Ga0500622_0009463 Ga0500622_0009463_456_2012 502
97 iso_pu_bacteria 2510917020 2511120854 502
98 3300031456 Ga0307513_10002605 Ga0307513_100026053 504
99 3300031548 Ga0307408_100002229 Ga0307408_1000022298 504
100 3300031911 Ga0307412_10121179 Ga0307412_101211792 504
101 3300041407 Ga0439447_005073 Ga0439447_005073_989_2692 504
102 3300041413 Ga0439465_0000856 Ga0439465_0000856_3081_4634 504
103 3300046507 Ga0495606_0000563 Ga0495606_0000563_52186_53748 504
104 3300047320 Ga0495672_0000165 Ga0495672_0000165_91355_92911 504
105 3300047472 Ga0495686_0002609 Ga0495686_0002609_11113_12672 504
106 3300049460 Ga0495682_0005597 Ga0495682_0005597_1353_2912 504
107 3300049822 Ga0501035_0005303 Ga0501035_0005303_1944_3497 504
108 3300050511 nmdc:mga08y16_167221_c1 nmdc:mga08y16_167221_c1_239_1774 504
109 3300061719 Ga0466962_0058293 Ga0466962_0058293_222_1778 504
110 iso_pu_bacteria 3000865235 3000868062 504
111 3300005328 Ga0070676_10038746 Ga0070676_100387462 505
112 3300005333 Ga0070677_10002715 Ga0070677_100027152 505
113 3300005333 Ga0070677_10008684 Ga0070677_100086843 505
114 3300005333 Ga0070677_10018286 Ga0070677_100182861 505
115 3300005337 Ga0070682_100044777 Ga0070682_1000447772 505
116 3300005354 Ga0070675_100008846 Ga0070675_1000088464 505
117 3300005354 Ga0070675_100104109 Ga0070675_1001041093 505
118 3300005356 Ga0070674_100018285 Ga0070674_1000182853 505
119 3300005364 Ga0070673_100069279 Ga0070673_1000692793 505
120 3300005456 Ga0070678_100162605 Ga0070678_1001626051 505
121 3300005466 Ga0070685_10056088 Ga0070685_100560882 505
122 3300005543 Ga0070672_100128565 Ga0070672_1001285651 505
123 3300005543 Ga0070672_100151510 Ga0070672_1001515102 505
124 3300005840 Ga0068870_10000939 Ga0068870_100009393 505
125 3300005937 Ga0081455_10002639 Ga0081455_100026392 505
126 3300006881 Ga0068865_100036655 Ga0068865_1000366552 505
127 3300014325 Ga0163163_10143224 Ga0163163_101432242 505
128 3300025893 Ga0207682_10001254 Ga0207682_100012547 505
129 3300025893 Ga0207682_10015377 Ga0207682_100153773 505
130 3300025899 Ga0207642_10019980 Ga0207642_100199802 505
131 3300025907 Ga0207645_10052450 Ga0207645_100524502 505
132 3300025908 Ga0207643_10002751 Ga0207643_100027517 505
133 3300025937 Ga0207669_10076013 Ga0207669_100760132 505
134 3300025940 Ga0207691_10017066 Ga0207691_100170665 505
135 3300025940 Ga0207691_10187955 Ga0207691_101879552 505
136 3300025960 Ga0207651_10088250 Ga0207651_100882502 505
137 3300026118 Ga0207675_100065417 Ga0207675_1000654172 505
138 3300026121 Ga0207683_10010088 Ga0207683_100100886 505
139 3300026121 Ga0207683_10021633 Ga0207683_100216334 505
140 3300026121 Ga0207683_10041604 Ga0207683_100416044 505
141 3300031456 Ga0307513_10013360 Ga0307513_100133609 505
142 3300031456 Ga0307513_10066466 Ga0307513_100664664 505
143 3300032126 Ga0307415_100169975 Ga0307415_1001699751 505
144 3300046460 Ga0495638_0013373 Ga0495638_0013373_2797_4359 505
145 3300049573 Ga0501037_0042122 Ga0501037_0042122_1246_2814 506
146 3300049823 Ga0501044_0000114 Ga0501044_0000114_72814_74382 506
147 3300005356 Ga0070674_100033291 Ga0070674_1000332912 507
148 3300014326 Ga0157380_10033838 Ga0157380_100338383 507
149 3300014326 Ga0157380_10061538 Ga0157380_100615382 507
150 3300025923 Ga0207681_10126159 Ga0207681_101261592 507
151 3300049571 Ga0501034_0008177 Ga0501034_0008177_6741_8312 507
152 3300049581 Ga0501047_0099617 Ga0501047_0099617_372_1943 507
153 3300044712 Ga0453684_0017935 Ga0453684_0017935_4825_6450 508
154 3300045051 Ga0451576_0003628 Ga0451576_0003628_11794_13353 508
155 3300046491 Ga0495584_0000057 Ga0495584_0000057_46336_47907 508
156 3300048927 Ga0496124_0031992 Ga0496124_0031992_1994_3568 508
157 iso_pu_bacteria 2524023250 2524612222 508
158 3300037471 Ga0395905_0026354 Ga0395905_0026354_1243_2790 510
159 3300028666 Ga0265336_10000057 Ga0265336_1000005755 512
160 3300002705 JGI25156J39149_1000026 JGI25156J39149_100002690 513
161 3300009093 Ga0105240_10022764 Ga0105240_100227644 513
162 3300009147 Ga0114129_10052961 Ga0114129_100529613 513
163 3300032002 Ga0307416_100204399 Ga0307416_1002043992 513

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06964

Alpha-L-AF_C

Alpha-L-arabinofuranosidase C-terminal domain

370

560

0.96

PF22848

ASD1_dom

Alpha-L-arabinofuranosidase 1 domain

130

212

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
6d25-assembly1.cif.gz_B crystal structure of the gh51 arabinofuranosidase from xanthomonas axonopodis pv. citri 0.9786 28 510
2vrq-assembly2.cif.gz_B structure of an inactive mutant of arabinofuranosidase from thermobacillus xylanilyticus in complex with a pentasaccharide 0.9643 30 512
6zt7-assembly1.cif.gz_A x-ray structure of mutated arabinofuranosidase 0.9613 30 512
2vrk-assembly2.cif.gz_B structure of a seleno-methionyl derivative of wild type arabinofuranosidase from thermobacillus xylanilyticus 0.9605 30 512
6d25-assembly1.cif.gz_B crystal structure of the gh51 arabinofuranosidase from xanthomonas axonopodis pv. citri 0.9571 28 510
ID Description Score Start End Superfamily
6d25A02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9796 45 399 3.20.20.80
6d25A02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9608 45 399 3.20.20.80
3ug3C02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9225 45 397 3.20.20.80
3ug3C02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9094 45 397 3.20.20.80
2y2wC02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.8825 45 397 3.20.20.80
ID Description Score Start End GO Terms
AF-A0A4Q7CL04-F1-model_v4 non-reducing end alpha-L-arabinofuranosidase (EC 3.2.1.55) 0.999 301 388 GO:0000272
GO:0046373
GO:0046556
AF-A0A060CHY9-F1-model_v4 non-reducing end alpha-L-arabinofuranosidase (EC 3.2.1.55) 0.9897 314 447 GO:0000272
GO:0046373
GO:0046556
AF-A0A060C5C9-F1-model_v4 non-reducing end alpha-L-arabinofuranosidase (EC 3.2.1.55) 0.9884 253 346 GO:0000272
GO:0046373
GO:0046556
AF-K1TBN6-F1-model_v4 non-reducing end alpha-L-arabinofuranosidase (EC 3.2.1.55) 0.9876 139 397 GO:0000272
GO:0046373
GO:0046556
AF-A0A060CNC0-F1-model_v4 non-reducing end alpha-L-arabinofuranosidase (EC 3.2.1.55) 0.9854 245 378 GO:0000272
GO:0046373
GO:0046556

Feature Viewer

pLDDT pTM Quality
89.61 0.9 High
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Predicted Structure (AlphaFold2)

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