F243234

General Info

Members Datasets Scaffolds Average Seq Length
164 104 152 811

Family's Representative Sequence

Representative Sequence 3300005367|Ga0070667_100002816|Ga0070667_1000028164
Length 852
Sequence MFEVMSDRPTGAAPARLVAVLGPTNTGKTHLAVERMLGHASGMIGLPLRLLAREIYDRIVKVRGERAVALITGEEKIVPPRPHYYVCTVEAMPLSREVEFLAVDEIQLCADPERGHVFTHRLLHARGTAETMLLGAASMAPLVRRLLPQAEIVSRERFSVLSYSGSKKLTRLPRRTAVVAFSADQVYAIAELIRRQRGGAAVVMGSLSPRTRNAQVELYQSGEVDFLVATDAIGMGLNMDVDHVAFAGLRKFDGKRMRWLRPAEVGQIAGRAGRFRRDGTFGVTGDCDELDHDVVEAVEAHRYEPVEACEWRNPRLDFGSLSLLMRSLAAPPDRAGLKLSEESLDETTLRALAAIPLVADRARDRSALLRLWDVCQTPDFRKTGLDDHLRLIREFFEALTGRAGRIPPEWIAGQFAGLDRLDGDIDALSARLASVRTLAYVTNRPDWLADAAGWQGRTRALEDRLSDTLHERLMARFVDRRTSALMRGLRVREDMLAGVAADGAVTVEGHYVGRLQAAAFEPARGATLLEEKALRAAAVAAVGPEIARRLGRLAAEADEAFALSPDGTVLWRGEAAGAISGGGPFHPRVRLYGDLGPSAARERAARRLEAFVAAEAGRRLAPLRALDVAMSEGRLKGLARGLAYRLSEAGGVLDRAQVRAEARALSQVERRALKALGVRLGAFSLYLPALLRPDAAALLRIFAIRETPHWRPAADGPSPLPHSRPPPAALAAFGLRAVGRLAVPVEQLERLDALMRSAVRRADGIVLSDQAREELGWSEADALAILRGLGFLNMAKAGEPAVWRRRGERTDTSGRAETPPAASPFAALASLKPAAAPVRRRRPRRRSKQVRT

Samples

Sample ID Description Type Environment
1 2643221552 Caulobacter sp. Root1472 Isolate Unclassified
2 2643221574 Brevundimonas sp. Root608 Isolate Unclassified
3 2643221598 Phenylobacterium sp. Root700 Isolate Unclassified
4 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
5 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
6 2643221663 Brevundimonas sp. Root1279 Isolate Unclassified
7 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
8 2643221699 Brevundimonas sp. Root1423 Isolate Unclassified
9 2928972540 Brevundimonas sp. 1080 Isolate Rhizosphere
10 2941485952 Brevundimonas faecalis 2814 Isolate Rhizosphere
11 2977240413 Brevundimonas vesicularis SORGH_AS 431 Isolate Unclassified
12 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
13 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
14 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
15 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
16 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
17 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
18 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
19 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
20 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
21 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
22 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
23 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
24 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
28 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
31 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
32 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
35 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
36 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
39 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
40 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
41 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
42 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
44 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
64 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
65 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
66 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
67 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
68 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
69 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
70 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
71 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
72 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
73 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
74 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
75 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
76 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
77 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
78 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
79 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
80 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
81 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
82 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
83 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
84 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
85 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
86 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
87 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
88 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
89 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
90 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
91 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
92 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
93 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
94 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
95 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
96 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
97 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
98 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
99 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
100 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
102 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
103 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
104 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.07
Metatranscriptomes 0.61
Isolates 7.32

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.93
Nodule 0
Rhizoplane 1.22
Rhizosphere 75
Stem 0
Stem Tuber 0
Unclassified 15.85

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0006562J51391_1068546 3300003578 Bacteria 5680
2 Ga0055536_1000484 3300003781 Bacteria 27706
3 Ga0055530_10001367 3300003791 Bacteria 18079
4 Ga0055531_10008761 3300003794 Bacteria 5278
5 Ga0065165_1000542 3300005262 Bacteria 57140
6 Ga0070670_100000044 3300005331 Bacteria 140263
7 Ga0068869_100024274 3300005334 Bacteria 4199
8 Ga0070668_100000098 3300005347 Bacteria 53574
9 Ga0070671_100009271 3300005355 Bacteria 7906
10 Ga0070659_100004793 3300005366 Bacteria 9668
11 Ga0070667_100000356 3300005367 Bacteria 50241
12 Ga0070667_100002816 3300005367 Bacteria 15004
13 Ga0070667_100006944 3300005367 Bacteria 9407
14 Ga0070667_100015549 3300005367 Bacteria 6291
15 Ga0070681_10016591 3300005458 Bacteria 7354
16 Ga0070665_100000144 3300005548 Bacteria 132302
17 Ga0070665_100000762 3300005548 Bacteria 42638
18 Ga0070665_100027501 3300005548 Bacteria 5729
19 Ga0068855_100079277 3300005563 Bacteria 3809
20 Ga0068859_100001088 3300005617 Bacteria 27740
21 Ga0068864_100000060 3300005618 Bacteria 124506
22 Ga0068864_100000061 3300005618 Bacteria 123373
23 Ga0068863_100000023 3300005841 Bacteria 186490
24 Ga0068863_100002498 3300005841 Bacteria 18291
25 Ga0068863_100006335 3300005841 Bacteria 11605
26 Ga0068858_100000363 3300005842 Bacteria 47852
27 Ga0068858_100001420 3300005842 Bacteria 24630
28 Ga0068858_100024192 3300005842 Bacteria 5660
29 Ga0068860_100000115 3300005843 Bacteria 128506
30 Ga0068860_100000122 3300005843 Bacteria 125178
31 Ga0068860_100012676 3300005843 Bacteria 8293
32 Ga0068860_100019462 3300005843 Bacteria 6582
33 Ga0068862_100001272 3300005844 Bacteria 23685
34 Ga0068862_100008719 3300005844 Bacteria 8393
35 Ga0068862_100046692 3300005844 Bacteria 3694
36 Ga0097620_100001088 3300006931 Bacteria 27740
37 Ga0105240_10001080 3300009093 Bacteria 48123
38 Ga0105240_10001863 3300009093 Bacteria 35182
39 Ga0105240_10013562 3300009093 Bacteria 11185
40 Ga0105248_10001990 3300009177 Bacteria 22723
41 Ga0105248_10007703 3300009177 Bacteria 11833
42 Ga0105248_10019992 3300009177 Bacteria 7414
43 Ga0105248_10048096 3300009177 Bacteria 4784
44 Ga0105249_10000478 3300009553 Bacteria 37253
45 Ga0157373_10003642 3300013100 Bacteria 11642
46 Ga0157369_10035316 3300013105 Bacteria 5483
47 Ga0163163_10011534 3300014325 Bacteria 8026
48 Ga0163163_10058261 3300014325 Bacteria 3819
49 Ga0157379_10000663 3300014968 Bacteria 27864
50 Ga0213872_10005785 3300021361 Bacteria 6283
51 Ga0213876_10015113 3300021384 Bacteria 4091
52 Ga0209676_1000038 3300025292 Bacteria 449305
53 Ga0209676_1001282 3300025292 Bacteria 25969
54 Ga0209758_1002333 3300025297 Bacteria 19589
55 Ga0209050_1000639 3300025298 Bacteria 54216
56 Ga0209257_1000060 3300025304 Bacteria 372267
57 Ga0209257_1000540 3300025304 Bacteria 64961
58 Ga0207695_10015986 3300025913 Bacteria 8808
59 Ga0207695_10018255 3300025913 Bacteria 8117
60 Ga0207695_10071965 3300025913 Bacteria 3530
61 Ga0207657_10003177 3300025919 Bacteria 17574
62 Ga0207681_10037552 3300025923 Bacteria 3202
63 Ga0207650_10000065 3300025925 Bacteria 140452
64 Ga0207690_10003203 3300025932 Bacteria 9822
65 Ga0207704_10013159 3300025938 Bacteria 4133
66 Ga0207711_10001692 3300025941 Bacteria 20298
67 Ga0207711_10007667 3300025941 Bacteria 9023
68 Ga0207711_10014420 3300025941 Bacteria 6564
69 Ga0207667_10025769 3300025949 Bacteria 6433
70 Ga0207667_10027678 3300025949 Bacteria 6166
71 Ga0207712_10000625 3300025961 Bacteria 27973
72 Ga0207668_10000018 3300025972 Bacteria 158577
73 Ga0207668_10000243 3300025972 Bacteria 36618
74 Ga0207668_10003734 3300025972 Bacteria 8959
75 Ga0207658_10000168 3300025986 Bacteria 70040
76 Ga0207658_10005254 3300025986 Bacteria 8908
77 Ga0207658_10010450 3300025986 Bacteria 6305
78 Ga0207703_10000373 3300026035 Bacteria 47832
79 Ga0207703_10011534 3300026035 Bacteria 6875
80 Ga0207641_10000067 3300026088 Bacteria 155379
81 Ga0207641_10000709 3300026088 Bacteria 35735
82 Ga0207641_10009728 3300026088 Bacteria 7918
83 Ga0207676_10000062 3300026095 Bacteria 112045
84 Ga0207676_10000243 3300026095 Bacteria 47468
85 Ga0268266_10000003 3300028379 Bacteria 1701703
86 Ga0268266_10001138 3300028379 Bacteria 33094
87 Ga0268266_10001678 3300028379 Bacteria 25491
88 Ga0268266_10015729 3300028379 Bacteria 6480
89 Ga0268265_10000654 3300028380 Bacteria 34397
90 Ga0268265_10001007 3300028380 Bacteria 25467
91 Ga0268265_10004949 3300028380 Bacteria 9157
92 Ga0268265_10035293 3300028380 Bacteria 3652
93 Ga0268264_10000002 3300028381 Bacteria 1153045
94 Ga0268264_10000172 3300028381 Bacteria 140393
95 Ga0307517_10000705 3300028786 Bacteria 57524
96 Ga0307517_10044428 3300028786 Bacteria 4699
97 Ga0265338_10010262 3300028800 Bacteria 11024
98 Ga0265338_10065070 3300028800 Bacteria 3166
99 Ga0265327_10000740 3300031251 Bacteria 50953
100 Ga0265327_10005972 3300031251 Bacteria 9915
101 Ga0307513_10000208 3300031456 Bacteria 84906
102 Ga0307513_10000764 3300031456 Bacteria 46492
103 Ga0307513_10011006 3300031456 Bacteria 11285
104 Ga0307513_10011796 3300031456 Bacteria 10833
105 Ga0307516_10000020 3300031730 Bacteria 195931
106 Ga0307406_10001992 3300031901 Bacteria 11160
107 Ga0307414_10011588 3300032004 Bacteria 5178
108 Ga0307414_10012136 3300032004 Bacteria 5082
109 Ga0307510_10008320 3300033180 Bacteria 12363
110 Ga0373936_0004819 3300035113 Bacteria 5090
111 Ga0373931_0031554 3300035691 Bacteria 2736
112 Ga0373927_0003701 3300035695 Bacteria 10877
113 Ga0373925_0000111 3300037068 Bacteria 87426
114 Ga0395899_0000666 3300037312 Bacteria 34912
115 Ga0395900_0000016 3300037418 Bacteria 382407
116 Ga0395900_0008966 3300037418 Bacteria 10258
117 Ga0395898_0014241 3300037466 Bacteria 8174
118 Ga0395905_0003448 3300037471 Bacteria 16921
119 Ga0395905_0018520 3300037471 Bacteria 6610
120 Ga0395901_0000022 3300038443 Bacteria 296356
121 Ga0395901_0007043 3300038443 Bacteria 11366
122 Ga0436365_0980217 3300039437 Bacteria 43548
123 Ga0436365_1256094 3300039437 Bacteria 14655
124 Ga0436361_0141919 3300039447 Bacteria 3678
125 Ga0436361_0946917 3300039447 Bacteria 13973
126 Ga0495638_0001665 3300046460 Bacteria 19654
127 Ga0495620_0025604 3300046515 Bacteria 2788
128 Ga0495643_0008479 3300046522 Bacteria 6503
129 Ga0495597_0000444 3300046542 Bacteria 35383
130 Ga0495633_0002739 3300046558 Bacteria 12200
131 Ga0495669_0000005 3300046684 Bacteria 193971
132 Ga0495669_0000285 3300046684 Bacteria 28807
133 Ga0495613_0001303 3300046689 Bacteria 19069
134 Ga0495649_0000623 3300046694 Bacteria 29180
135 Ga0495660_0033601 3300046810 Bacteria 2874
136 Ga0495672_0007921 3300047320 Bacteria 7923
137 Ga0495672_0026727 3300047320 Bacteria 3678
138 Ga0495677_0005648 3300047445 Bacteria 4741
139 Ga0495686_0009674 3300047472 Bacteria 6923
140 Ga0496102_0022425 3300048905 Bacteria 5594
141 Ga0496115_0000481 3300048918 Bacteria 31582
142 Ga0496121_0000053 3300048924 Bacteria 312611
143 Ga0496122_0012345 3300048925 Bacteria 8524
144 Ga0496123_0002037 3300048926 Bacteria 26111
145 Ga0496125_0001747 3300048928 Bacteria 30174
146 Ga0501047_0001497 3300049581 Bacteria 22769
147 Ga0501047_0065178 3300049581 Bacteria 3512
148 Ga0501047_0095654 3300049581 Bacteria 2849
149 Ga0501044_0041726 3300049823 Bacteria 4776
150 Ga0500635_0000115 3300053080 Bacteria 47775
151 Ga0500595_006126 3300053119 Bacteria 5153
152 Ga0500559_0000152 3300053136 Bacteria 54664

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300035691 Ga0373931_0031554 Ga0373931_0031554_36_2534 713
2 3300046460 Ga0495638_0001665 Ga0495638_0001665_21_2303 724
3 3300005563 Ga0068855_100079277 Ga0068855_1000792772 746
4 3300009093 Ga0105240_10013562 Ga0105240_100135627 746
5 3300025913 Ga0207695_10018255 Ga0207695_100182557 746
6 3300025949 Ga0207667_10027678 Ga0207667_100276784 746
7 3300021384 Ga0213876_10015113 Ga0213876_100151132 750
8 3300013100 Ga0157373_10003642 Ga0157373_100036423 753
9 3300039447 Ga0436361_0141919 Ga0436361_0141919_403_2868 754
10 3300046515 Ga0495620_0025604 Ga0495620_0025604_64_2589 755
11 3300046522 Ga0495643_0008479 Ga0495643_0008479_1442_3967 755
12 3300046542 Ga0495597_0000444 Ga0495597_0000444_32120_34645 755
13 3300009177 Ga0105248_10048096 Ga0105248_100480963 760
14 3300048924 Ga0496121_0000053 Ga0496121_0000053_283212_285740 761
15 3300049581 Ga0501047_0095654 Ga0501047_0095654_320_2800 761
16 3300049823 Ga0501044_0041726 Ga0501044_0041726_2107_4587 761
17 3300005844 Ga0068862_100046692 Ga0068862_1000466922 762
18 3300025972 Ga0207668_10003734 Ga0207668_100037347 762
19 3300028380 Ga0268265_10000654 Ga0268265_100006544 762
20 3300039437 Ga0436365_0980217 Ga0436365_0980217_20498_23020 762
21 3300053119 Ga0500595_006126 Ga0500595_006126_1828_4377 762
22 3300021361 Ga0213872_10005785 Ga0213872_100057854 766
23 3300031901 Ga0307406_10001992 Ga0307406_100019923 768
24 3300003781 Ga0055536_1000484 Ga0055536_10004843 769
25 3300025292 Ga0209676_1000038 Ga0209676_1000038309 769
26 3300025304 Ga0209257_1000060 Ga0209257_100006029 769
27 3300028800 Ga0265338_10010262 Ga0265338_100102622 770
28 3300053080 Ga0500635_0000115 Ga0500635_0000115_18824_21343 770
29 3300039447 Ga0436361_0946917 Ga0436361_0946917_3212_5755 771
30 3300048918 Ga0496115_0000481 Ga0496115_0000481_25429_27939 771
31 3300005334 Ga0068869_100024274 Ga0068869_1000242742 776
32 3300005618 Ga0068864_100000060 Ga0068864_100000060106 776
33 3300005841 Ga0068863_100000023 Ga0068863_10000002325 776
34 3300009177 Ga0105248_10019992 Ga0105248_100199924 776
35 3300009553 Ga0105249_10000478 Ga0105249_1000047821 776
36 3300014325 Ga0163163_10058261 Ga0163163_100582611 776
37 3300025941 Ga0207711_10007667 Ga0207711_100076671 776
38 3300026088 Ga0207641_10000067 Ga0207641_1000006754 776
39 3300026095 Ga0207676_10000243 Ga0207676_1000024323 776
40 3300028786 Ga0307517_10044428 Ga0307517_100444282 777
41 3300031251 Ga0265327_10000740 Ga0265327_1000074034 777
42 3300048905 Ga0496102_0022425 Ga0496102_0022425_884_3400 778
43 3300005842 Ga0068858_100000363 Ga0068858_10000036325 779
44 3300037312 Ga0395899_0000666 Ga0395899_0000666_9985_12501 779
45 3300037418 Ga0395900_0000016 Ga0395900_0000016_65635_68151 779
46 3300037466 Ga0395898_0014241 Ga0395898_0014241_3075_5591 779
47 3300037471 Ga0395905_0003448 Ga0395905_0003448_4868_7384 779
48 3300038443 Ga0395901_0000022 Ga0395901_0000022_103715_106231 779
49 3300046684 Ga0495669_0000285 Ga0495669_0000285_12341_14848 779
50 3300047445 Ga0495677_0005648 Ga0495677_0005648_1567_4074 779
51 3300049581 Ga0501047_0001497 Ga0501047_0001497_13467_15971 779
52 3300026035 Ga0207703_10000373 Ga0207703_1000037324 781
53 3300035695 Ga0373927_0003701 Ga0373927_0003701_74_2620 781
54 3300037068 Ga0373925_0000111 Ga0373925_0000111_73311_75857 781
55 3300031730 Ga0307516_10000020 Ga0307516_10000020116 782
56 3300003791 Ga0055530_10001367 Ga0055530_100013678 786
57 3300003794 Ga0055531_10008761 Ga0055531_100087612 786
58 3300025297 Ga0209758_1002333 Ga0209758_100233310 786
59 3300025298 Ga0209050_1000639 Ga0209050_100063933 786
60 3300025304 Ga0209257_1000540 Ga0209257_100054033 786
61 3300028800 Ga0265338_10065070 Ga0265338_100650701 786
62 3300025913 Ga0207695_10071965 Ga0207695_100719652 787
63 3300005331 Ga0070670_100000044 Ga0070670_10000004441 788
64 3300005347 Ga0070668_100000098 Ga0070668_10000009828 788
65 3300005367 Ga0070667_100000356 Ga0070667_10000035611 788
66 3300005618 Ga0068864_100000061 Ga0068864_10000006180 788
67 3300005841 Ga0068863_100002498 Ga0068863_1000024988 788
68 3300005842 Ga0068858_100024192 Ga0068858_1000241922 788
69 3300005843 Ga0068860_100000122 Ga0068860_10000012281 788
70 3300005844 Ga0068862_100001272 Ga0068862_10000127215 788
71 3300009093 Ga0105240_10001863 Ga0105240_1000186325 788
72 3300039437 Ga0436365_1256094 Ga0436365_1256094_9993_12563 788
73 3300047472 Ga0495686_0009674 Ga0495686_0009674_1096_3636 788
74 3300005367 Ga0070667_100015549 Ga0070667_1000155493 789
75 3300005548 Ga0070665_100000762 Ga0070665_10000076234 789
76 3300005844 Ga0068862_100008719 Ga0068862_1000087197 789
77 3300025972 Ga0207668_10000018 Ga0207668_1000001867 789
78 3300025986 Ga0207658_10010450 Ga0207658_100104503 789
79 3300028379 Ga0268266_10001678 Ga0268266_100016784 789
80 3300028380 Ga0268265_10004949 Ga0268265_100049494 789
81 3300032004 Ga0307414_10011588 Ga0307414_100115883 789
82 3300048928 Ga0496125_0001747 Ga0496125_0001747_2849_5344 789
83 3300025925 Ga0207650_10000065 Ga0207650_1000006542 790
84 3300025961 Ga0207712_10000625 Ga0207712_1000062517 790
85 3300025972 Ga0207668_10000243 Ga0207668_1000024328 790
86 3300025986 Ga0207658_10000168 Ga0207658_1000016842 790
87 3300026035 Ga0207703_10011534 Ga0207703_100115346 790
88 3300026088 Ga0207641_10000709 Ga0207641_1000070927 790
89 3300026095 Ga0207676_10000062 Ga0207676_1000006298 790
90 3300028379 Ga0268266_10001138 Ga0268266_1000113820 790
91 3300028380 Ga0268265_10001007 Ga0268265_100010077 790
92 3300028381 Ga0268264_10000172 Ga0268264_1000017295 790
93 3300005355 Ga0070671_100009271 Ga0070671_1000092712 791
94 3300005841 Ga0068863_100006335 Ga0068863_1000063358 791
95 3300025923 Ga0207681_10037552 Ga0207681_100375521 791
96 3300026088 Ga0207641_10009728 Ga0207641_100097288 791
97 3300005458 Ga0070681_10016591 Ga0070681_100165913 793
98 3300025919 Ga0207657_10003177 Ga0207657_1000317712 793
99 3300047320 Ga0495672_0007921 Ga0495672_0007921_2636_5218 793
100 3300047320 Ga0495672_0026727 Ga0495672_0026727_688_3207 793
101 3300005366 Ga0070659_100004793 Ga0070659_1000047937 794
102 3300005367 Ga0070667_100006944 Ga0070667_1000069444 794
103 3300005548 Ga0070665_100027501 Ga0070665_1000275018 794
104 3300005617 Ga0068859_100001088 Ga0068859_10000108826 794
105 3300005842 Ga0068858_100001420 Ga0068858_10000142012 794
106 3300005843 Ga0068860_100019462 Ga0068860_1000194621 794
107 3300006931 Ga0097620_100001088 Ga0097620_1000010884 794
108 3300009177 Ga0105248_10007703 Ga0105248_100077038 794
109 3300014325 Ga0163163_10011534 Ga0163163_100115345 794
110 3300014968 Ga0157379_10000663 Ga0157379_100006633 794
111 3300025941 Ga0207711_10014420 Ga0207711_100144208 794
112 3300025986 Ga0207658_10005254 Ga0207658_100052544 794
113 3300028379 Ga0268266_10015729 Ga0268266_100157294 794
114 3300038443 Ga0395901_0007043 Ga0395901_0007043_6369_8918 794
115 3300025932 Ga0207690_10003203 Ga0207690_100032034 795
116 3300025938 Ga0207704_10013159 Ga0207704_100131593 797
117 3300025292 Ga0209676_1001282 Ga0209676_100128214 798
118 3300031456 Ga0307513_10011006 Ga0307513_100110068 798
119 3300037418 Ga0395900_0008966 Ga0395900_0008966_3602_6163 798
120 3300037471 Ga0395905_0018520 Ga0395905_0018520_2733_5294 798
121 3300033180 Ga0307510_10008320 Ga0307510_100083206 799
122 3300046694 Ga0495649_0000623 Ga0495649_0000623_8464_10953 800
123 3300046684 Ga0495669_0000005 Ga0495669_0000005_132752_135304 801
124 3300046689 Ga0495613_0001303 Ga0495613_0001303_1598_4159 801
125 iso_pu_bacteria 2643221598 2644000569 802
126 3300005843 Ga0068860_100000115 Ga0068860_10000011534 803
127 3300028381 Ga0268264_10000002 Ga0268264_10000002430 803
128 3300031251 Ga0265327_10005972 Ga0265327_100059723 804
129 3300049581 Ga0501047_0065178 Ga0501047_0065178_795_3326 804
130 3300053136 Ga0500559_0000152 Ga0500559_0000152_1052_3607 806
131 3300046810 Ga0495660_0033601 Ga0495660_0033601_189_2759 807
132 3300028786 Ga0307517_10000705 Ga0307517_1000070544 809
133 3300031456 Ga0307513_10000208 Ga0307513_1000020824 809
134 3300031456 Ga0307513_10000764 Ga0307513_1000076410 809
135 3300009093 Ga0105240_10001080 Ga0105240_100010806 810
136 3300005548 Ga0070665_100000144 Ga0070665_10000014418 811
137 3300028379 Ga0268266_10000003 Ga0268266_10000003310 811
138 3300048925 Ga0496122_0012345 Ga0496122_0012345_1823_4312 811
139 3300048926 Ga0496123_0002037 Ga0496123_0002037_12281_14770 811
140 iso_pu_bacteria 2643221614 2644088490 811
141 iso_pu_bacteria 2643221661 2644343726 811
142 iso_pu_bacteria 2643221666 2644368796 811
143 3300025913 Ga0207695_10015986 Ga0207695_100159864 813
144 3300025949 Ga0207667_10025769 Ga0207667_100257696 813
145 3300031456 Ga0307513_10011796 Ga0307513_100117963 813
146 3300005262 Ga0065165_1000542 Ga0065165_100054232 814
147 iso_pu_bacteria 2643221552 2643779557 817
148 3300009177 Ga0105248_10001990 Ga0105248_100019909 819
149 3300025941 Ga0207711_10001692 Ga0207711_1000169217 819
150 3300035113 Ga0373936_0004819 Ga0373936_0004819_1285_3831 819
151 3300005367 Ga0070667_100002816 Ga0070667_1000028164 820
152 3300005843 Ga0068860_100012676 Ga0068860_1000126763 820
153 3300028380 Ga0268265_10035293 Ga0268265_100352931 820
154 iso_pu_bacteria 2643221574 2643883897 820
155 iso_pu_bacteria 2643221699 2644550943 820
156 iso_pu_bacteria 2643221663 2644353131 821
157 iso_pu_bacteria 2941485952 2941486360 821
158 iso_pu_bacteria 2643221699 2644551160 822
159 3300032004 Ga0307414_10012136 Ga0307414_100121365 823
160 iso_pu_bacteria 2928972540 2928973257 825
161 iso_pu_bacteria 2977240413 2977240748 825
162 3300003578 Ga0006562J51391_1068546 Ga0006562J51391_10685463 829
163 3300013105 Ga0157369_10035316 Ga0157369_100353165 829
164 3300046558 Ga0495633_0002739 Ga0495633_0002739_3156_5645 829

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22527

DEXQc_Suv3

DEXQ-box helicase domain of Suv3

10

160

0.92

PF00271

Helicase_C

Helicase conserved C-terminal domain

163

276

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
6jtz-assembly1.cif.gz_A crystal structure of hrecq1_d2-zn-wh containing mutation on beta-hairpin 0.7264 156 280
6jtz-assembly1.cif.gz_B crystal structure of hrecq1_d2-zn-wh containing mutation on beta-hairpin 0.7197 154 280
2hjv-assembly2.cif.gz_B structure of the second domain (residues 207-368) of the bacillus subtilis yxin protein 0.7168 157 301
6gen-assembly1.cif.gz_M chromatin remodeller-nucleosome complex at 4.5 a resolution. 0.7045 170 284
3rc3-assembly1.cif.gz_A human mitochondrial helicase suv3 0.6975 6 487
ID Description Score Start End Superfamily
af_A0A0P0VQJ4_229_320_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8322 172 225 3.40.50.300
3rc3A04 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8205 153 296 3.40.50.300
af_A0A0R0FN75_187_265_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8081 166 226 3.40.50.300
af_Q0ILZ4_321_478_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8072 170 294 3.40.50.300
3rc3A04 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7996 153 296 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A257JEX6-F1-model_v4 Helicase C-terminal domain-containing protein 0.9671 147 475 GO:0004386
GO:0005524
GO:0016787
AF-A0A257JEX6-F1-model_v4 Helicase C-terminal domain-containing protein 0.9614 147 475 GO:0004386
GO:0005524
GO:0016787
AF-A0A531KM62-F1-model_v4 Helicase 0.9572 107 310 GO:0004386
GO:0005524
GO:0016787
AF-A0A436VBT4-F1-model_v4 Helicase 0.9542 154 446 GO:0004386
GO:0005524
GO:0016787
AF-A0A6B3UP58-F1-model_v4 Phosphonate-binding protein 0.9517 555 782

Feature Viewer

pLDDT pTM Quality
78.54 0.53 Medium
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Predicted Structure (AlphaFold2)

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