F244198

General Info

Members Datasets Scaffolds Average Seq Length
164 90 164 264

Family's Representative Sequence

Representative Sequence 3300031344|Ga0265316_10096235|Ga0265316_100962352
Length 276
Sequence MRLKCRSGRMFRKKNYFALGAVTLLALLILSLPPRVTGRLKLAAGSLFLPLFGLANTTQQLPADLADRVMPRRELLQEIDRLRRENEQLHVQALQAAASARENIQLRSLLGWQQQAPWKLKPANVIMRDPANWWRTVQIDLGSRDGLRENLPVLTADGLMGRVSSVGFTRSQVVLIGDPDCRVSALVENPAHDMGVVNAGGLLDTSIVDLTYLSGGASLKPGQNVITSGLGGIFPKGIPIGQVVDSRPVEFGLYTEARVKLSVNLGALEQVWVLFP

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
3 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
6 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
7 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
8 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
9 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
10 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
11 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
12 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
13 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
14 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
15 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
16 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
17 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
18 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
19 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
20 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
30 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
31 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
32 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
33 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
34 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
35 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
36 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
37 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
38 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
39 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
40 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
41 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
42 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
43 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
44 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
45 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
46 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
47 3300034957 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 Metagenome Rhizosphere
48 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
49 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
50 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
51 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
52 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
53 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
54 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
55 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
56 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
57 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
58 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
59 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
60 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
61 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
62 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
63 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
64 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
65 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
66 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
67 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
68 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
69 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
70 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
71 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
72 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
73 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
74 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
75 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
76 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
86 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
88 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
89 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
90 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.61
Nodule 0
Rhizoplane 0.61
Rhizosphere 98.17
Stem 0
Stem Tuber 0
Unclassified 0.61

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10072392 3300003320 Bacteria 5596
2 Ga0070689_100199338 3300005340 Bacteria 1634
3 Ga0070688_100024118 3300005365 Bacteria 3585
4 Ga0070714_100363622 3300005435 Bacteria 1361
5 Ga0070705_100015782 3300005440 Bacteria 3910
6 Ga0070694_100029127 3300005444 Bacteria 3601
7 Ga0070679_100587485 3300005530 Bacteria 1057
8 Ga0070686_100003453 3300005544 Bacteria 8669
9 Ga0068855_100007040 3300005563 Bacteria 13642
10 Ga0068855_100404916 3300005563 Unclassified 1495
11 Ga0068857_100173518 3300005577 Bacteria 1960
12 Ga0068856_100000760 3300005614 Bacteria 34998
13 Ga0068856_100050689 3300005614 Bacteria 4092
14 Ga0068856_101018106 3300005614 Unclassified 846
15 Ga0068859_100117770 3300005617 Unclassified 2722
16 Ga0075428_100011808 3300006844 Bacteria 9721
17 Ga0075428_100026526 3300006844 Bacteria 6414
18 Ga0097620_100117764 3300006931 Unclassified 2722
19 Ga0105240_10048382 3300009093 Bacteria 5375
20 Ga0105240_10146015 3300009093 Bacteria 2822
21 Ga0111539_10056032 3300009094 Bacteria 4686
22 Ga0105248_10120526 3300009177 Bacteria 2959
23 Ga0105248_10602583 3300009177 Unclassified 1239
24 Ga0105238_10009530 3300009551 Bacteria 9720
25 Ga0105238_10040656 3300009551 Bacteria 4711
26 Ga0157370_10141342 3300013104 Bacteria 2243
27 Ga0157370_10183863 3300013104 Unclassified 1941
28 Ga0207707_10160243 3300025912 Bacteria 1967
29 Ga0207695_10248636 3300025913 Bacteria 1678
30 Ga0207663_10002674 3300025916 Bacteria 8590
31 Ga0207694_10006509 3300025924 Bacteria 8889
32 Ga0207694_10036285 3300025924 Bacteria 3783
33 Ga0207664_10080124 3300025929 Bacteria 2653
34 Ga0207670_10302210 3300025936 Unclassified 1253
35 Ga0207670_10505691 3300025936 Unclassified 982
36 Ga0207667_10046196 3300025949 Bacteria 4611
37 Ga0207667_10568356 3300025949 Bacteria 1146
38 Ga0207702_10000506 3300026078 Bacteria 43980
39 Ga0207702_10039928 3300026078 Bacteria 3934
40 Ga0207702_10404911 3300026078 Unclassified 1316
41 Ga0207674_10103170 3300026116 Bacteria 2831
42 Ga0265337_1000108 3300028556 Bacteria 41858
43 Ga0265337_1005269 3300028556 Bacteria 5165
44 Ga0265337_1013645 3300028556 Unclassified 2718
45 Ga0265326_10008233 3300028558 Bacteria 3153
46 Ga0265326_10065111 3300028558 Unclassified 1030
47 Ga0265319_1000001 3300028563 Bacteria 549513
48 Ga0265319_1026012 3300028563 Unclassified 2088
49 Ga0265319_1047312 3300028563 Unclassified 1432
50 Ga0265319_1090149 3300028563 Unclassified 968
51 Ga0265334_10024461 3300028573 Bacteria 2449
52 Ga0265334_10090139 3300028573 Bacteria 1119
53 Ga0265318_10057477 3300028577 Unclassified 1454
54 Ga0265323_10003344 3300028653 Bacteria 7111
55 Ga0265323_10045220 3300028653 Bacteria 1582
56 Ga0265323_10105006 3300028653 Unclassified 931
57 Ga0265322_10044704 3300028654 Bacteria 1261
58 Ga0265322_10062317 3300028654 Bacteria 1058
59 Ga0265336_10000385 3300028666 Bacteria 28195
60 Ga0265336_10006613 3300028666 Unclassified 4165
61 Ga0265336_10013272 3300028666 Bacteria 2749
62 Ga0265336_10067503 3300028666 Unclassified 1070
63 Ga0265338_10000331 3300028800 Bacteria 85997
64 Ga0265338_10000580 3300028800 Bacteria 64333
65 Ga0265338_10001064 3300028800 Bacteria 45619
66 Ga0265338_10001320 3300028800 Bacteria 40589
67 Ga0265338_10001520 3300028800 Bacteria 37452
68 Ga0265338_10002144 3300028800 Bacteria 30308
69 Ga0265338_10010576 3300028800 Bacteria 10792
70 Ga0265338_10013329 3300028800 Bacteria 9288
71 Ga0265338_10015750 3300028800 Bacteria 8281
72 Ga0265338_10050654 3300028800 Bacteria 3751
73 Ga0265338_10080063 3300028800 Bacteria 2746
74 Ga0265338_10100392 3300028800 Bacteria 2360
75 Ga0265338_10112472 3300028800 Unclassified 2189
76 Ga0265338_10197425 3300028800 Bacteria 1520
77 Ga0265338_10285431 3300028800 Bacteria 1204
78 Ga0265324_10013764 3300029957 Bacteria 3009
79 Ga0265324_10060957 3300029957 Archaea 1289
80 Ga0265324_10086420 3300029957 Unclassified 1066
81 Ga0265330_10127480 3300031235 Bacteria 1083
82 Ga0265320_10000540 3300031240 Bacteria 29222
83 Ga0265320_10000696 3300031240 Bacteria 25617
84 Ga0265320_10018296 3300031240 Bacteria 3863
85 Ga0265320_10035314 3300031240 Bacteria 2535
86 Ga0265320_10035865 3300031240 Bacteria 2511
87 Ga0265320_10042216 3300031240 Unclassified 2264
88 Ga0265320_10050725 3300031240 Unclassified 2015
89 Ga0265320_10079793 3300031240 Unclassified 1529
90 Ga0265325_10039154 3300031241 Unclassified 2497
91 Ga0265325_10053294 3300031241 Unclassified 2074
92 Ga0265340_10030139 3300031247 Bacteria 2721
93 Ga0265340_10092014 3300031247 Unclassified 1416
94 Ga0265327_10002626 3300031251 Bacteria 18535
95 Ga0265316_10020442 3300031344 Bacteria 5633
96 Ga0265316_10057374 3300031344 Unclassified 3036
97 Ga0265316_10096235 3300031344 Bacteria 2254
98 Ga0265316_10099706 3300031344 Bacteria 2209
99 Ga0265316_10139950 3300031344 Bacteria 1818
100 Ga0265313_10001776 3300031595 Bacteria 19740
101 Ga0265313_10021380 3300031595 Unclassified 3539
102 Ga0265313_10042196 3300031595 Bacteria 2242
103 Ga0265314_10012615 3300031711 Bacteria 6880
104 Ga0265314_10023287 3300031711 Bacteria 4724
105 Ga0265314_10268820 3300031711 Unclassified 970
106 Ga0373938_0046158 3300034957 Bacteria 982
107 Ga0373929_0000933 3300035085 Bacteria 5684
108 Ga0373944_0000119 3300035089 Bacteria 14794
109 Ga0373944_0045000 3300035089 Unclassified 1376
110 Ga0373951_0000814 3300035091 Bacteria 8487
111 Ga0373932_0000001 3300035112 Bacteria 1459067
112 Ga0373956_0015753 3300035119 Unclassified 3169
113 Ga0373943_0143487 3300035170 Unclassified 1288
114 Ga0373942_0027087 3300035207 Unclassified 1489
115 Ga0373962_0000005 3300035242 Bacteria 63923
116 Ga0373931_0000008 3300035691 Bacteria 362269
117 Ga0373935_0057369 3300035692 Bacteria 2484
118 Ga0373927_0010548 3300035695 Bacteria 6158
119 Ga0373927_0037433 3300035695 Bacteria 3153
120 Ga0373927_0229512 3300035695 Unclassified 1220
121 Ga0373933_0169740 3300035724 Bacteria 1388
122 Ga0373937_0064654 3300036401 Bacteria 3365
123 Ga0373925_0000192 3300037068 Bacteria 66343
124 Ga0373925_0021415 3300037068 Bacteria 4710
125 Ga0451807_0146892 3300041486 Bacteria 1756
126 Ga0451577_0004541 3300042876 Bacteria 14612
127 Ga0451577_0407400 3300042876 Unclassified 1234
128 Ga0453684_0097461 3300044712 Bacteria 3609
129 Ga0453684_0728464 3300044712 Bacteria 1075
130 Ga0451576_0092891 3300045051 Bacteria 3138
131 Ga0451576_0177357 3300045051 Unclassified 2225
132 Ga0451576_0421600 3300045051 Unclassified 1400
133 Ga0495618_0016809 3300046514 Bacteria 4480
134 Ga0495630_0084945 3300046517 Unclassified 2389
135 Ga0495640_0044660 3300046533 Bacteria 3080
136 Ga0495586_0004453 3300046535 Bacteria 7482
137 Ga0495587_0116687 3300046536 Bacteria 1531
138 Ga0495667_0060814 3300046559 Bacteria 2477
139 Ga0495634_0003078 3300046642 Bacteria 13575
140 Ga0495647_0019955 3300046681 Bacteria 2402
141 Ga0495658_0079592 3300046683 Unclassified 1920
142 Ga0495613_0008907 3300046689 Bacteria 7447
143 Ga0501031_0000231 3300049568 Bacteria 31958
144 Ga0501032_0043929 3300049569 Bacteria 3025
145 Ga0501033_0002690 3300049570 Bacteria 14908
146 Ga0501033_0013385 3300049570 Bacteria 6248
147 Ga0501033_0154435 3300049570 Bacteria 1654
148 Ga0501034_0099667 3300049571 Bacteria 2900
149 Ga0501037_0321430 3300049573 Bacteria 1071
150 Ga0501039_0166854 3300049575 Unclassified 1731
151 Ga0501043_0078511 3300049579 Bacteria 2594
152 Ga0501043_0083341 3300049579 Bacteria 2514
153 Ga0501043_0199911 3300049579 Bacteria 1552
154 Ga0501046_0049744 3300049580 Bacteria 3315
155 Ga0501047_0067422 3300049581 Bacteria 3449
156 Ga0501047_0643809 3300049581 Bacteria 880
157 Ga0501070_0349170 3300049586 Bacteria 1201
158 Ga0501035_0004691 3300049822 Bacteria 12974
159 Ga0501035_0106174 3300049822 Bacteria 2462
160 Ga0501044_0000079 3300049823 Bacteria 117924
161 Ga0501044_0031878 3300049823 Bacteria 5543
162 nmdc:mga0qj67_229545_c1 3300050509 Bacteria 1506
163 nmdc:mga08y16_46687_c1 3300050511 Bacteria 4534
164 Ga0500650_0000702 3300053098 Bacteria 8962

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300009093 Ga0105240_10146015 Ga0105240_101460152 232
2 3300025913 Ga0207695_10248636 Ga0207695_102486362 232
3 3300049570 Ga0501033_0154435 Ga0501033_0154435_416_1216 234
4 3300009094 Ga0111539_10056032 Ga0111539_100560322 236
5 3300050511 nmdc:mga08y16_46687_c1 nmdc:mga08y16_46687_c1_3419_4135 236
6 3300005340 Ga0070689_100199338 Ga0070689_1001993382 238
7 3300005365 Ga0070688_100024118 Ga0070688_1000241182 238
8 3300025936 Ga0207670_10302210 Ga0207670_103022102 238
9 3300005617 Ga0068859_100117770 Ga0068859_1001177702 244
10 3300006931 Ga0097620_100117764 Ga0097620_1001177642 244
11 3300013104 Ga0157370_10141342 Ga0157370_101413422 244
12 3300049581 Ga0501047_0643809 Ga0501047_0643809_100_870 249
13 3300005563 Ga0068855_100404916 Ga0068855_1004049162 252
14 3300028800 Ga0265338_10015750 Ga0265338_100157505 252
15 3300005440 Ga0070705_100015782 Ga0070705_1000157823 253
16 3300005444 Ga0070694_100029127 Ga0070694_1000291272 253
17 3300005544 Ga0070686_100003453 Ga0070686_1000034533 253
18 3300025936 Ga0207670_10505691 Ga0207670_105056912 253
19 3300028653 Ga0265323_10003344 Ga0265323_100033442 255
20 3300028654 Ga0265322_10044704 Ga0265322_100447041 255
21 3300034957 Ga0373938_0046158 Ga0373938_0046158_153_956 255
22 3300042876 Ga0451577_0004541 Ga0451577_0004541_11499_12311 255
23 3300045051 Ga0451576_0177357 Ga0451576_0177357_273_1085 255
24 3300031251 Ga0265327_10002626 Ga0265327_100026262 256
25 3300044712 Ga0453684_0097461 Ga0453684_0097461_2422_3225 256
26 3300005563 Ga0068855_100007040 Ga0068855_1000070403 257
27 3300005577 Ga0068857_100173518 Ga0068857_1001735182 257
28 3300005614 Ga0068856_100000760 Ga0068856_10000076015 257
29 3300025949 Ga0207667_10046196 Ga0207667_100461963 257
30 3300026078 Ga0207702_10000506 Ga0207702_1000050621 257
31 3300028563 Ga0265319_1047312 Ga0265319_10473122 257
32 3300028577 Ga0265318_10057477 Ga0265318_100574772 257
33 3300028800 Ga0265338_10050654 Ga0265338_100506542 257
34 3300031240 Ga0265320_10079793 Ga0265320_100797932 257
35 3300026116 Ga0207674_10103170 Ga0207674_101031702 258
36 3300031344 Ga0265316_10099706 Ga0265316_100997062 258
37 3300045051 Ga0451576_0421600 Ga0451576_0421600_530_1336 258
38 3300029957 Ga0265324_10086420 Ga0265324_100864202 259
39 3300044712 Ga0453684_0728464 Ga0453684_0728464_219_1022 259
40 3300028558 Ga0265326_10065111 Ga0265326_100651111 260
41 3300028666 Ga0265336_10013272 Ga0265336_100132722 260
42 3300029957 Ga0265324_10013764 Ga0265324_100137642 260
43 3300031247 Ga0265340_10092014 Ga0265340_100920142 260
44 3300035085 Ga0373929_0000933 Ga0373929_0000933_1518_2321 260
45 3300035089 Ga0373944_0000119 Ga0373944_0000119_13410_14213 260
46 3300035091 Ga0373951_0000814 Ga0373951_0000814_6236_7039 260
47 3300035112 Ga0373932_0000001 Ga0373932_0000001_653972_654775 260
48 3300035170 Ga0373943_0143487 Ga0373943_0143487_351_1154 260
49 3300035207 Ga0373942_0027087 Ga0373942_0027087_264_1067 260
50 3300035242 Ga0373962_0000005 Ga0373962_0000005_6749_7552 260
51 3300035691 Ga0373931_0000008 Ga0373931_0000008_120546_121349 260
52 3300035695 Ga0373927_0229512 Ga0373927_0229512_108_911 260
53 3300037068 Ga0373925_0000192 Ga0373925_0000192_57002_57805 260
54 3300028556 Ga0265337_1005269 Ga0265337_10052694 261
55 3300028800 Ga0265338_10002144 Ga0265338_100021442 261
56 3300028573 Ga0265334_10024461 Ga0265334_100244612 265
57 3300028800 Ga0265338_10010576 Ga0265338_100105763 265
58 3300005435 Ga0070714_100363622 Ga0070714_1003636221 266
59 3300005530 Ga0070679_100587485 Ga0070679_1005874851 266
60 3300006844 Ga0075428_100011808 Ga0075428_1000118085 266
61 3300006844 Ga0075428_100026526 Ga0075428_1000265265 266
62 3300009093 Ga0105240_10048382 Ga0105240_100483824 266
63 3300013104 Ga0157370_10183863 Ga0157370_101838632 266
64 3300025912 Ga0207707_10160243 Ga0207707_101602432 266
65 3300025929 Ga0207664_10080124 Ga0207664_100801241 266
66 3300050509 nmdc:mga0qj67_229545_c1 nmdc:mga0qj67_229545_c1_519_1325 266
67 3300005614 Ga0068856_101018106 Ga0068856_1010181061 267
68 3300009177 Ga0105248_10120526 Ga0105248_101205262 267
69 3300009177 Ga0105248_10602583 Ga0105248_106025832 267
70 3300009551 Ga0105238_10009530 Ga0105238_100095307 267
71 3300009551 Ga0105238_10040656 Ga0105238_100406563 267
72 3300025916 Ga0207663_10002674 Ga0207663_100026746 267
73 3300025924 Ga0207694_10006509 Ga0207694_1000650911 267
74 3300025924 Ga0207694_10036285 Ga0207694_100362853 267
75 3300025949 Ga0207667_10568356 Ga0207667_105683561 267
76 3300026078 Ga0207702_10404911 Ga0207702_104049111 267
77 3300028556 Ga0265337_1000108 Ga0265337_10001086 267
78 3300028556 Ga0265337_1013645 Ga0265337_10136453 267
79 3300028558 Ga0265326_10008233 Ga0265326_100082334 267
80 3300028563 Ga0265319_1000001 Ga0265319_1000001100 267
81 3300028563 Ga0265319_1026012 Ga0265319_10260123 267
82 3300028573 Ga0265334_10090139 Ga0265334_100901391 267
83 3300028653 Ga0265323_10045220 Ga0265323_100452202 267
84 3300028653 Ga0265323_10105006 Ga0265323_101050061 267
85 3300028654 Ga0265322_10062317 Ga0265322_100623171 267
86 3300028666 Ga0265336_10000385 Ga0265336_1000038510 267
87 3300028666 Ga0265336_10006613 Ga0265336_100066134 267
88 3300028666 Ga0265336_10067503 Ga0265336_100675032 267
89 3300028800 Ga0265338_10000331 Ga0265338_1000033147 267
90 3300028800 Ga0265338_10000580 Ga0265338_1000058032 267
91 3300028800 Ga0265338_10001064 Ga0265338_100010645 267
92 3300028800 Ga0265338_10001320 Ga0265338_1000132015 267
93 3300028800 Ga0265338_10001520 Ga0265338_1000152022 267
94 3300028800 Ga0265338_10013329 Ga0265338_100133295 267
95 3300028800 Ga0265338_10100392 Ga0265338_101003922 267
96 3300028800 Ga0265338_10112472 Ga0265338_101124723 267
97 3300028800 Ga0265338_10197425 Ga0265338_101974252 267
98 3300028800 Ga0265338_10285431 Ga0265338_102854311 267
99 3300029957 Ga0265324_10060957 Ga0265324_100609572 267
100 3300031235 Ga0265330_10127480 Ga0265330_101274802 267
101 3300031240 Ga0265320_10000540 Ga0265320_1000054015 267
102 3300031240 Ga0265320_10000696 Ga0265320_100006963 267
103 3300031240 Ga0265320_10018296 Ga0265320_100182963 267
104 3300031240 Ga0265320_10035314 Ga0265320_100353142 267
105 3300031240 Ga0265320_10035865 Ga0265320_100358653 267
106 3300031240 Ga0265320_10042216 Ga0265320_100422163 267
107 3300031240 Ga0265320_10050725 Ga0265320_100507253 267
108 3300031241 Ga0265325_10039154 Ga0265325_100391543 267
109 3300031241 Ga0265325_10053294 Ga0265325_100532943 267
110 3300031247 Ga0265340_10030139 Ga0265340_100301393 267
111 3300031344 Ga0265316_10020442 Ga0265316_100204423 267
112 3300031344 Ga0265316_10057374 Ga0265316_100573743 267
113 3300031344 Ga0265316_10096235 Ga0265316_100962352 267
114 3300031344 Ga0265316_10139950 Ga0265316_101399503 267
115 3300031595 Ga0265313_10001776 Ga0265313_1000177610 267
116 3300031595 Ga0265313_10021380 Ga0265313_100213803 267
117 3300031595 Ga0265313_10042196 Ga0265313_100421963 267
118 3300031711 Ga0265314_10012615 Ga0265314_100126155 267
119 3300031711 Ga0265314_10023287 Ga0265314_100232873 267
120 3300031711 Ga0265314_10268820 Ga0265314_102688201 267
121 3300035089 Ga0373944_0045000 Ga0373944_0045000_27_836 267
122 3300035119 Ga0373956_0015753 Ga0373956_0015753_29_832 267
123 3300035692 Ga0373935_0057369 Ga0373935_0057369_1074_1877 267
124 3300035695 Ga0373927_0010548 Ga0373927_0010548_4397_5200 267
125 3300035695 Ga0373927_0037433 Ga0373927_0037433_1228_2031 267
126 3300035724 Ga0373933_0169740 Ga0373933_0169740_139_960 267
127 3300036401 Ga0373937_0064654 Ga0373937_0064654_1197_2000 267
128 3300037068 Ga0373925_0021415 Ga0373925_0021415_314_1117 267
129 3300042876 Ga0451577_0407400 Ga0451577_0407400_237_1040 267
130 3300046514 Ga0495618_0016809 Ga0495618_0016809_902_1705 267
131 3300046517 Ga0495630_0084945 Ga0495630_0084945_322_1143 267
132 3300046533 Ga0495640_0044660 Ga0495640_0044660_1230_2033 267
133 3300046535 Ga0495586_0004453 Ga0495586_0004453_5125_5928 267
134 3300046536 Ga0495587_0116687 Ga0495587_0116687_84_887 267
135 3300046559 Ga0495667_0060814 Ga0495667_0060814_495_1316 267
136 3300046642 Ga0495634_0003078 Ga0495634_0003078_12603_13406 267
137 3300046681 Ga0495647_0019955 Ga0495647_0019955_38_841 267
138 3300046683 Ga0495658_0079592 Ga0495658_0079592_111_920 267
139 3300046689 Ga0495613_0008907 Ga0495613_0008907_5915_6718 267
140 3300049568 Ga0501031_0000231 Ga0501031_0000231_15755_16558 267
141 3300049569 Ga0501032_0043929 Ga0501032_0043929_859_1662 267
142 3300049570 Ga0501033_0002690 Ga0501033_0002690_4598_5401 267
143 3300049570 Ga0501033_0013385 Ga0501033_0013385_3579_4382 267
144 3300049571 Ga0501034_0099667 Ga0501034_0099667_1269_2081 267
145 3300049573 Ga0501037_0321430 Ga0501037_0321430_27_830 267
146 3300049575 Ga0501039_0166854 Ga0501039_0166854_575_1387 267
147 3300049579 Ga0501043_0078511 Ga0501043_0078511_899_1711 267
148 3300049579 Ga0501043_0083341 Ga0501043_0083341_254_1057 267
149 3300049579 Ga0501043_0199911 Ga0501043_0199911_738_1541 267
150 3300049580 Ga0501046_0049744 Ga0501046_0049744_978_1781 267
151 3300049581 Ga0501047_0067422 Ga0501047_0067422_1208_2011 267
152 3300049586 Ga0501070_0349170 Ga0501070_0349170_37_840 267
153 3300049822 Ga0501035_0004691 Ga0501035_0004691_7605_8408 267
154 3300049822 Ga0501035_0106174 Ga0501035_0106174_713_1516 267
155 3300049823 Ga0501044_0000079 Ga0501044_0000079_115548_116351 267
156 3300049823 Ga0501044_0031878 Ga0501044_0031878_31_834 267
157 3300053098 Ga0500650_0000702 Ga0500650_0000702_508_1311 267
158 3300028563 Ga0265319_1090149 Ga0265319_10901491 268
159 3300028800 Ga0265338_10080063 Ga0265338_100800633 268
160 3300041486 Ga0451807_0146892 Ga0451807_0146892_718_1527 268
161 3300045051 Ga0451576_0092891 Ga0451576_0092891_1318_2127 268
162 3300005614 Ga0068856_100050689 Ga0068856_1000506893 272
163 3300026078 Ga0207702_10039928 Ga0207702_100399283 272
164 3300003320 rootH2_10072392 rootH2_100723922 273

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04085

MreC

rod shape-determining protein MreC

125

275

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
6zm0-assembly1.cif.gz_AAA crystal structure of mrec from pseudomonas aeruginosa 0.895 110 272
6zm0-assembly1.cif.gz_AAA crystal structure of mrec from pseudomonas aeruginosa 0.8842 110 272
2qf5-assembly1.cif.gz_A high resolution structure of the major periplasmic domain from the cell shape-determining filament mrec (monoclinic form) 0.8388 109 273
2qf4-assembly2.cif.gz_B high resolution structure of the major periplasmic domain from the cell shape-determining filament mrec (orthorhombic form) 0.8313 109 271
5lp5-assembly1.cif.gz_C complex between penicillin-binding protein (pbp2) and mrec from helicobacter pylori 0.8256 109 271
ID Description Score Start End Superfamily
af_Q2FXS6_104_165_2.40.10.340 Mainly Beta;Beta Barrel;Thrombin, subunit H;Rod shape-determining protein MreC, domain 1 0.977 114 168 2.40.10.340
2j5uB02 Mainly Beta;Beta Barrel;Thrombin, subunit H;Rod shape-determining protein MreC, domain 1 0.9483 110 172 2.40.10.340
2j5uB03 Mainly Beta;Beta Barrel;Thrombin, subunit H;Rod shape-determining protein MreC, domain 2 0.8858 175 257 2.40.10.350
2qf4A01 Mainly Beta;Beta Barrel;Thrombin, subunit H;Rod shape-determining protein MreC, domain 1 0.8752 109 168 2.40.10.340
2j5uB03 Mainly Beta;Beta Barrel;Thrombin, subunit H;Rod shape-determining protein MreC, domain 2 0.8646 175 257 2.40.10.350
ID Description Score Start End GO Terms
AF-A0A7X7S9Z4-F1-model_v4 Cell shape-determining protein MreC (Cell shape protein MreC) 0.9336 109 271 GO:0005886
GO:0008360
AF-A0A1B2YUK8-F1-model_v4 Cell shape-determining protein MreC (Cell shape protein MreC) 0.9168 110 273 GO:0005886
GO:0008360
AF-A0A6H9P2K2-F1-model_v4 deleted 0.9122 109 272
AF-A0A4Q5ZCQ9-F1-model_v4 Cell shape-determining protein MreC (Cell shape protein MreC) 0.912 109 272 GO:0005886
GO:0008360
AF-A0A645IFJ9-F1-model_v4 Cell shape-determining protein MreC (Cell shape protein MreC) 0.9111 104 272 GO:0005886
GO:0008360

Feature Viewer

pLDDT pTM Quality
77.39 0.58 Medium
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Predicted Structure (AlphaFold2)

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