F244672

General Info

Members Datasets Scaffolds Average Seq Length
164 136 328 353

Family's Representative Sequence

Representative Sequence 3300047322|Ga0495680_0070588|Ga0495680_0070588_743_1987
Length 414
Sequence MWSSSFDDWFLRRRTLEQRRNHSCSRWQQSNPEHFFDNQHFWGGFVKRQYAARGAVTQSGRQSFVSIAGRRIGPGEPPYIVAEMSGNHNGDINRAFRIIEAAKQAGADAVKIQTYRADTITIDHCGAEFMVKGGLWDGRRLYELYEEAHTPWEWHEAIFEHGRKIGIAVFSSPFDATAVDFLEGLGAPAYKIASPELIDLPLIRKVARTGKPIMMSTGMATLEEIGEAVEAARGAGATEIVVLHCTAAYPAPPEEANLATIAEITRRFDVVSGLSDHTLGTVVSALAVGLGAAVIEKHFTLARAEGGVDSAFSLEPAELAELVTTARIAQVAIGSPAFEPTRSEEIVLKNRRSLYVVAPVAKGELLTEANVRSIRPGNGLKPKFLDAVLGRRATRELAFGEPLDVSMVEGGIDS

Samples

Sample ID Description Type Environment
1 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
4 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
13 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
14 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
19 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
20 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
21 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
22 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
27 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
43 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
44 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
49 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
50 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
51 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
52 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
76 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
77 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
78 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
79 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
80 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
81 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
82 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
83 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
84 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
85 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
86 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
87 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
88 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
89 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
90 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
91 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
92 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
93 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
94 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
95 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
96 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
97 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
98 3300042533 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0826F_E14_072516_1472 Metagenome Rhizosphere
99 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
100 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
101 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
102 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
103 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
104 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
105 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
106 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
107 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
108 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
109 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
110 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
111 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
112 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
113 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
114 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
115 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
116 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
117 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
118 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
119 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
120 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
121 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
123 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
124 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
125 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
126 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
127 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
128 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
129 2548876994 Herbaspirillum lusitanum P6-12 Isolate Nodule
130 2690316117 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
131 2738541333 Rhizobium sophoriradicis CCBAU 03470 Isolate Unclassified
132 2738543023 Pedobacter sp. OK628 Isolate Unclassified
133 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
134 2839094727 Herbaspirillum robiniae HZ10 Isolate Nodule
135 2847417321 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
136 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.12
Metatranscriptomes 0
Isolates 4.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.05
Nodule 1.22
Rhizoplane 8.54
Rhizosphere 82.32
Stem 0
Stem Tuber 0
Unclassified 4.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495680_0070588 3300047322 Bacteria 2662
2 JGI24737J22298_10000471 3300001990 Bacteria 13900
3 JGI25153J46596_10000351 3300003215 Bacteria 31880
4 Ga0065714_10064650 3300005288 Bacteria 25881
5 Ga0070690_100000060 3300005330 Bacteria 54174
6 Ga0070666_10001348 3300005335 Bacteria 14899
7 Ga0070660_100001930 3300005339 Bacteria 14288
8 Ga0070689_100000001 3300005340 Bacteria 1334580
9 Ga0070673_100002834 3300005364 Bacteria 10674
10 Ga0070667_100002044 3300005367 Bacteria 17880
11 Ga0070708_100015668 3300005445 Bacteria 6264
12 Ga0070663_100011065 3300005455 Bacteria 5648
13 Ga0068867_100002263 3300005459 Bacteria 13535
14 Ga0070706_100240771 3300005467 Bacteria 1689
15 Ga0070707_100002784 3300005468 Bacteria 16652
16 Ga0070707_100004545 3300005468 Bacteria 12992
17 Ga0070698_100001270 3300005471 Bacteria 28182
18 Ga0070698_100064440 3300005471 Unclassified 3692
19 Ga0070699_100004907 3300005518 Bacteria 11798
20 Ga0070699_100206186 3300005518 Bacteria 1749
21 Ga0070672_100003721 3300005543 Bacteria 9923
22 Ga0070686_100061472 3300005544 Bacteria 2427
23 Ga0070695_100210048 3300005545 Bacteria 1397
24 Ga0070696_100244447 3300005546 Bacteria 1355
25 Ga0070693_100154788 3300005547 Bacteria 1455
26 Ga0068855_100023323 3300005563 Bacteria 7410
27 Ga0068856_100005154 3300005614 Bacteria 12900
28 Ga0068856_100023538 3300005614 Bacteria 5989
29 Ga0068859_100002175 3300005617 Bacteria 19909
30 Ga0068864_100271278 3300005618 Bacteria 1581
31 Ga0068866_10002762 3300005718 Bacteria 7238
32 Ga0068866_10083259 3300005718 Bacteria 1723
33 Ga0068861_100028663 3300005719 Bacteria 4064
34 Ga0068863_100039280 3300005841 Bacteria 4504
35 Ga0068858_100000164 3300005842 Bacteria 70895
36 Ga0068860_100000495 3300005843 Bacteria 48826
37 Ga0068860_100253798 3300005843 Bacteria 1713
38 Ga0081539_10002509 3300005985 Bacteria 25675
39 Ga0081539_10087212 3300005985 Bacteria 1622
40 Ga0068871_100017490 3300006358 Bacteria 5427
41 Ga0068865_100021556 3300006881 Bacteria 4192
42 Ga0097620_100002175 3300006931 Bacteria 19909
43 Ga0105240_10001666 3300009093 Bacteria 37717
44 Ga0105240_10287801 3300009093 Bacteria 1885
45 Ga0105247_10178147 3300009101 Bacteria 1417
46 Ga0114129_10022302 3300009147 Bacteria 8989
47 Ga0105242_10056056 3300009176 Bacteria 3225
48 Ga0105248_10000208 3300009177 Bacteria 67740
49 Ga0105239_10265367 3300010375 Unclassified 1930
50 Ga0157373_10000669 3300013100 Bacteria 26748
51 Ga0157371_10000639 3300013102 Bacteria 41528
52 Ga0157371_10067021 3300013102 Bacteria 2541
53 Ga0157370_10000331 3300013104 Bacteria 59371
54 Ga0157370_10001385 3300013104 Bacteria 30010
55 Ga0157370_10020112 3300013104 Bacteria 6674
56 Ga0157370_10050967 3300013104 Bacteria 3955
57 Ga0157370_10131849 3300013104 Unclassified 2331
58 Ga0157369_10005709 3300013105 Bacteria 14456
59 Ga0157378_10005374 3300013297 Bacteria 11234
60 Ga0157372_10001431 3300013307 Bacteria 25777
61 Ga0157375_10002898 3300013308 Bacteria 14865
62 Ga0157379_10000354 3300014968 Bacteria 36793
63 Ga0182006_1002272 3300015261 Bacteria 10613
64 Ga0209758_1000183 3300025297 Bacteria 140623
65 Ga0207642_10027312 3300025899 Bacteria 2334
66 Ga0207642_10072025 3300025899 Bacteria 1648
67 Ga0207680_10002923 3300025903 Bacteria 8017
68 Ga0207695_10310086 3300025913 Bacteria 1468
69 Ga0207646_10002402 3300025922 Bacteria 22101
70 Ga0207646_10005753 3300025922 Bacteria 12993
71 Ga0207694_10008090 3300025924 Bacteria 7948
72 Ga0207664_10169220 3300025929 Unclassified 1869
73 Ga0207686_10029015 3300025934 Bacteria 3259
74 Ga0207709_10046827 3300025935 Bacteria 2626
75 Ga0207670_10000002 3300025936 Bacteria 783058
76 Ga0207669_10133882 3300025937 Bacteria 1708
77 Ga0207691_10005152 3300025940 Bacteria 12622
78 Ga0207711_10001390 3300025941 Bacteria 22772
79 Ga0207679_10221464 3300025945 Bacteria 1592
80 Ga0207667_10019849 3300025949 Bacteria 7489
81 Ga0207651_10057265 3300025960 Bacteria 2687
82 Ga0207658_10001640 3300025986 Bacteria 17121
83 Ga0207703_10008356 3300026035 Bacteria 8183
84 Ga0207678_10038589 3300026067 Bacteria 4149
85 Ga0207702_10014642 3300026078 Bacteria 6509
86 Ga0207641_10004810 3300026088 Bacteria 11632
87 Ga0207641_10029661 3300026088 Bacteria 4525
88 Ga0207648_10013402 3300026089 Bacteria 7630
89 Ga0207675_100047993 3300026118 Bacteria 3985
90 Ga0268264_10002380 3300028381 Bacteria 16595
91 Ga0265334_10004953 3300028573 Bacteria 5858
92 Ga0265318_10000050 3300028577 Bacteria 118340
93 Ga0265338_10001999 3300028800 Bacteria 31678
94 Ga0265330_10000922 3300031235 Bacteria 18112
95 Ga0265332_10000127 3300031238 Bacteria 63659
96 Ga0265332_10014302 3300031238 Bacteria 3509
97 Ga0265328_10006072 3300031239 Bacteria 5140
98 Ga0265320_10000006 3300031240 Bacteria 333442
99 Ga0265331_10000004 3300031250 Bacteria 476985
100 Ga0265316_10120973 3300031344 Bacteria 1977
101 Ga0307509_10036084 3300031507 Bacteria 5418
102 Ga0265313_10002241 3300031595 Bacteria 17011
103 Ga0265313_10014375 3300031595 Bacteria 4681
104 Ga0265313_10034851 3300031595 Bacteria 2540
105 Ga0265313_10036743 3300031595 Bacteria 2456
106 Ga0307508_10000418 3300031616 Bacteria 50590
107 Ga0265314_10000014 3300031711 Bacteria 400363
108 Ga0265342_10006236 3300031712 Bacteria 8905
109 Ga0307516_10075947 3300031730 Bacteria 3213
110 Ga0307413_10205132 3300031824 Bacteria 1427
111 Ga0307414_10003967 3300032004 Bacteria 7981
112 Ga0307414_10005015 3300032004 Bacteria 7247
113 Ga0307414_10316905 3300032004 Bacteria 1326
114 Ga0307411_10048823 3300032005 Bacteria 2746
115 Ga0395899_0000707 3300037312 Bacteria 33548
116 Ga0395900_0000143 3300037418 Bacteria 120234
117 Ga0395898_0021535 3300037466 Bacteria 6537
118 Ga0395905_0000045 3300037471 Bacteria 241370
119 Ga0395905_0065542 3300037471 Unclassified 3401
120 Ga0395901_0004993 3300038443 Bacteria 13394
121 Ga0450901_000562 3300042533 Bacteria 4365
122 Ga0451577_0012960 3300042876 Bacteria 7822
123 Ga0466966_0011819 3300044684 Bacteria 5781
124 Ga0453684_0002912 3300044712 Bacteria 40119
125 Ga0453684_0014851 3300044712 Bacteria 12392
126 Ga0453684_0016566 3300044712 Bacteria 11508
127 Ga0466957_0043498 3300044842 Bacteria 2720
128 Ga0466967_0144364 3300045976 Unclassified 2219
129 Ga0495587_0032785 3300046536 Bacteria 3138
130 Ga0495668_0000023 3300046616 Bacteria 363848
131 Ga0495661_0000547 3300046665 Bacteria 38904
132 Ga0495671_0005337 3300046692 Bacteria 7542
133 Ga0495600_0087700 3300046809 Bacteria 2030
134 Ga0495674_0294936 3300047319 Bacteria 1325
135 Ga0496101_0017200 3300048904 Bacteria 4901
136 Ga0496102_0000583 3300048905 Bacteria 38664
137 Ga0496103_0029062 3300048906 Bacteria 3358
138 Ga0496106_0013019 3300048909 Bacteria 6137
139 Ga0496106_0126068 3300048909 Bacteria 2005
140 Ga0496107_0087547 3300048910 Bacteria 2274
141 Ga0496108_0249890 3300048911 Bacteria 1543
142 Ga0496108_0279429 3300048911 Bacteria 1453
143 Ga0496109_0039703 3300048912 Bacteria 4261
144 Ga0496109_0300545 3300048912 Bacteria 1513
145 Ga0496110_0015321 3300048913 Bacteria 6378
146 Ga0496111_0077149 3300048914 Bacteria 2429
147 Ga0496112_0033067 3300048915 Bacteria 5023
148 Ga0496113_0157346 3300048916 Bacteria 1795
149 Ga0501034_0003153 3300049571 Bacteria 18967
150 Ga0501072_0258385 3300049588 Bacteria 1387
151 Ga0501076_0316197 3300049592 Bacteria 1281
152 Ga0501081_0176941 3300049743 Bacteria 1542
153 Ga0501241_000613 3300049758 Bacteria 7654
154 Ga0500583_0052359 3300053092 Bacteria 1900
155 Ga0500611_002045 3300053727 Unclassified 2348
156 Ga0500645_015626 3300053730 Bacteria 2403
157 2550694822 2548876994 Bacteria 4904866
158 2692318736 2690316117 Bacteria 6800650
159 2739037109 2738541333 Bacteria 7106503
160 2739304247 2738543023 Bacteria 6767879
161 2821448622 2821443989 Bacteria 7658172
162 2839099604 2839094727 Bacteria 5534556
163 2847422762 2847417321 Bacteria 6913799
164 2852630544 2852627209 Bacteria 5896285
165 Ga0495680_0070588
166 JGI24737J22298_10000471
167 JGI25153J46596_10000351
168 Ga0065714_10064650
169 Ga0070690_100000060
170 Ga0070666_10001348
171 Ga0070660_100001930
172 Ga0070689_100000001
173 Ga0070673_100002834
174 Ga0070667_100002044
175 Ga0070708_100015668
176 Ga0070663_100011065
177 Ga0068867_100002263
178 Ga0070706_100240771
179 Ga0070707_100002784
180 Ga0070707_100004545
181 Ga0070698_100001270
182 Ga0070698_100064440
183 Ga0070699_100004907
184 Ga0070699_100206186
185 Ga0070672_100003721
186 Ga0070686_100061472
187 Ga0070695_100210048
188 Ga0070696_100244447
189 Ga0070693_100154788
190 Ga0068855_100023323
191 Ga0068856_100005154
192 Ga0068856_100023538
193 Ga0068859_100002175
194 Ga0068864_100271278
195 Ga0068866_10002762
196 Ga0068866_10083259
197 Ga0068861_100028663
198 Ga0068863_100039280
199 Ga0068858_100000164
200 Ga0068860_100000495
201 Ga0068860_100253798
202 Ga0081539_10002509
203 Ga0081539_10087212
204 Ga0068871_100017490
205 Ga0068865_100021556
206 Ga0097620_100002175
207 Ga0105240_10001666
208 Ga0105240_10287801
209 Ga0105247_10178147
210 Ga0114129_10022302
211 Ga0105242_10056056
212 Ga0105248_10000208
213 Ga0105239_10265367
214 Ga0157373_10000669
215 Ga0157371_10000639
216 Ga0157371_10067021
217 Ga0157370_10000331
218 Ga0157370_10001385
219 Ga0157370_10020112
220 Ga0157370_10050967
221 Ga0157370_10131849
222 Ga0157369_10005709
223 Ga0157378_10005374
224 Ga0157372_10001431
225 Ga0157375_10002898
226 Ga0157379_10000354
227 Ga0182006_1002272
228 Ga0209758_1000183
229 Ga0207642_10027312
230 Ga0207642_10072025
231 Ga0207680_10002923
232 Ga0207695_10310086
233 Ga0207646_10002402
234 Ga0207646_10005753
235 Ga0207694_10008090
236 Ga0207664_10169220
237 Ga0207686_10029015
238 Ga0207709_10046827
239 Ga0207670_10000002
240 Ga0207669_10133882
241 Ga0207691_10005152
242 Ga0207711_10001390
243 Ga0207679_10221464
244 Ga0207667_10019849
245 Ga0207651_10057265
246 Ga0207658_10001640
247 Ga0207703_10008356
248 Ga0207678_10038589
249 Ga0207702_10014642
250 Ga0207641_10004810
251 Ga0207641_10029661
252 Ga0207648_10013402
253 Ga0207675_100047993
254 Ga0268264_10002380
255 Ga0265334_10004953
256 Ga0265318_10000050
257 Ga0265338_10001999
258 Ga0265330_10000922
259 Ga0265332_10000127
260 Ga0265332_10014302
261 Ga0265328_10006072
262 Ga0265320_10000006
263 Ga0265331_10000004
264 Ga0265316_10120973
265 Ga0307509_10036084
266 Ga0265313_10002241
267 Ga0265313_10014375
268 Ga0265313_10034851
269 Ga0265313_10036743
270 Ga0307508_10000418
271 Ga0265314_10000014
272 Ga0265342_10006236
273 Ga0307516_10075947
274 Ga0307413_10205132
275 Ga0307414_10003967
276 Ga0307414_10005015
277 Ga0307414_10316905
278 Ga0307411_10048823
279 Ga0395899_0000707
280 Ga0395900_0000143
281 Ga0395898_0021535
282 Ga0395905_0000045
283 Ga0395905_0065542
284 Ga0395901_0004993
285 Ga0450901_000562
286 Ga0451577_0012960
287 Ga0466966_0011819
288 Ga0453684_0002912
289 Ga0453684_0014851
290 Ga0453684_0016566
291 Ga0466957_0043498
292 Ga0466967_0144364
293 Ga0495587_0032785
294 Ga0495668_0000023
295 Ga0495661_0000547
296 Ga0495671_0005337
297 Ga0495600_0087700
298 Ga0495674_0294936
299 Ga0496101_0017200
300 Ga0496102_0000583
301 Ga0496103_0029062
302 Ga0496106_0013019
303 Ga0496106_0126068
304 Ga0496107_0087547
305 Ga0496108_0249890
306 Ga0496108_0279429
307 Ga0496109_0039703
308 Ga0496109_0300545
309 Ga0496110_0015321
310 Ga0496111_0077149
311 Ga0496112_0033067
312 Ga0496113_0157346
313 Ga0501034_0003153
314 Ga0501072_0258385
315 Ga0501076_0316197
316 Ga0501081_0176941
317 Ga0501241_000613
318 Ga0500583_0052359
319 Ga0500611_002045
320 Ga0500645_015626
321 2550694822
322 2692318736
323 2739037109
324 2739304247
325 2821448622
326 2839099604
327 2847422762
328 2852630544

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03102

NeuB

NeuB family

98

337

0.98

PF08666

SAF

SAF domain

351

409

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
6ncs-assembly1.cif.gz_B crystal structure of n-acetylneuraminic acid (sialic acid) synthetase from leptospira borgpetersenii serovar hardjo-bovis in complex with citrate 0.9418 1 287
8h2c-assembly2.cif.gz_C crystal structure of the pseudaminic acid synthase psei from campylobacter jejuni 0.9342 1 344
8h2c-assembly2.cif.gz_C crystal structure of the pseudaminic acid synthase psei from campylobacter jejuni 0.929 1 344
8h2c-assembly1.cif.gz_B crystal structure of the pseudaminic acid synthase psei from campylobacter jejuni 0.9268 1 344
4ipj-assembly1.cif.gz_A-2 crystal structure of r314k n-acetyl neuraminic acid synthase from neiserria meningitidis with malate bound 0.9256 1 346
ID Description Score Start End Superfamily
af_Q58465_3_262_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9742 2 271 3.20.20.70
af_Q58465_3_262_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9522 2 271 3.20.20.70
2wqpA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9309 1 274 3.20.20.70
2wqpA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9207 1 274 3.20.20.70
1wvoA00 Alpha Beta;Alpha-Beta Complex;Type Iii Antifreeze Protein Isoform Hplc 12;Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.9108 290 347 3.90.1210.10
ID Description Score Start End GO Terms
AF-A0A4Y7U3F0-F1-model_v4 Pseudaminic acid synthase 0.9994 101 192 GO:0016051
GO:0047444
GO:0070085
AF-A7TBE0-F1-model_v4 N-acetylneuraminic acid synthase N-terminal domain-containing protein 0.9979 174 272 GO:0016051
AF-R7HYI2-F1-model_v4 Pseudaminic acid synthase 0.9919 1 345 GO:0016051
GO:0047444
GO:0070085
AF-X1J4S4-F1-model_v4 N-acetylneuraminic acid synthase N-terminal domain-containing protein 0.9897 123 187 GO:0016051
GO:0047444
GO:0070085
AF-A7TBE0-F1-model_v4 N-acetylneuraminic acid synthase N-terminal domain-containing protein 0.9879 174 272 GO:0016051

Map