F248685

General Info

Members Datasets Scaffolds Average Seq Length
166 133 332 353

Family's Representative Sequence

Representative Sequence 3300031251|Ga0265327_10001901|Ga0265327_100019014
Length 395
Sequence MLVVADRQWDPQDLAALWQLRRRAAGGCGGGRWCDCVKIPAPVAIDLDFWRGRRVLVTGHTGFKGAWLSLWLQSLGARAIGLAPGPPTSPSLYELADVGKGMSEQAVDVRDAPAMRRALREARPEVVIHLAAQPMVRRSLIDPASTYEINLMGTVNLLEAVRVGGESVGAVVVVTSDKCYENLGDGPHRFVEDEPLGGADPYSSSKACAELVASAYRRSFGSVKGLARLGSARAGNVIGGGDWGEDRLLPDAVRAVRDGTLLKVRNPGSVRPWQHVLNPLAGYLALAQALCEDAGTARAWNFGPPAEEARPVRWIVERLAALWDGRLEWETDEGENPPEAQRLELDSAAAEARLNWHPGVGLGEALEMLVSWHEAHSAGRDMRAASLQQIERFSS

Samples

Sample ID Description Type Environment
1 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
9 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
10 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
11 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
12 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
13 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
20 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
21 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
22 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
23 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
24 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
25 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
26 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
27 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
28 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
29 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
30 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
36 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
37 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
38 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
39 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
40 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
41 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
42 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
55 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
57 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
58 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
59 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
60 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
61 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
62 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
63 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
64 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
65 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
66 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
67 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
68 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
69 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
70 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
71 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
72 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
73 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
74 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
75 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
76 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
77 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
78 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
79 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
80 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
81 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
82 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
83 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
84 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
85 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
86 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
87 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
88 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
89 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
90 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
91 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
92 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
93 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
94 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
95 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
96 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
97 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
98 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
99 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
100 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
101 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
102 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
103 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
104 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
105 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
106 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
107 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
108 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
112 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
113 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
114 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
115 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
116 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
117 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
118 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
119 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
120 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
121 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
122 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
123 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
124 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
125 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
126 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
127 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
128 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
129 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
130 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
131 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
132 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
133 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.43
Nodule 0
Rhizoplane 12.65
Rhizosphere 76.51
Stem 0
Stem Tuber 0
Unclassified 0.6

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265327_10001901 3300031251 Bacteria 24126
2 Ga0070658_10002944 3300005327 Bacteria 14118
3 Ga0070682_100184246 3300005337 Bacteria 1461
4 Ga0070691_10053770 3300005341 Bacteria 1927
5 Ga0070669_100034965 3300005353 Bacteria 3639
6 Ga0070674_100001843 3300005356 Bacteria 11507
7 Ga0070674_100187499 3300005356 Bacteria 1588
8 Ga0070713_100481560 3300005436 Bacteria 1169
9 Ga0070708_100102520 3300005445 Bacteria 2622
10 Ga0068867_100025067 3300005459 Bacteria 4278
11 Ga0070684_100297967 3300005535 Bacteria 1479
12 Ga0070697_100008977 3300005536 Bacteria 7813
13 Ga0068853_100000337 3300005539 Bacteria 32715
14 Ga0070672_100000409 3300005543 Bacteria 24906
15 Ga0070665_100006107 3300005548 Bacteria 12316
16 Ga0070665_100010745 3300005548 Bacteria 9263
17 Ga0068855_100001138 3300005563 Bacteria 32970
18 Ga0070664_100018707 3300005564 Bacteria 5698
19 Ga0070664_100290086 3300005564 Bacteria 1477
20 Ga0068856_100108086 3300005614 Bacteria 2778
21 Ga0068852_100105849 3300005616 Bacteria 2549
22 Ga0068864_100394725 3300005618 Bacteria 1314
23 Ga0068866_10062977 3300005718 Bacteria 1932
24 Ga0081455_10024541 3300005937 Bacteria 5581
25 Ga0075363_100000245 3300006048 Bacteria 15302
26 Ga0075364_10039931 3300006051 Bacteria 3043
27 Ga0070712_100086503 3300006175 Bacteria 2285
28 Ga0075362_10001027 3300006177 Bacteria 8600
29 Ga0075367_10002803 3300006178 Bacteria 8086
30 Ga0075369_10019350 3300006186 Bacteria 2779
31 Ga0075366_10002093 3300006195 Bacteria 10144
32 Ga0075370_10009155 3300006353 Bacteria 5127
33 Ga0075428_100023194 3300006844 Bacteria 6864
34 Ga0075428_100025179 3300006844 Bacteria 6584
35 Ga0075428_100337351 3300006844 Bacteria 1619
36 Ga0075431_100010987 3300006847 Bacteria 9114
37 Ga0075431_100405463 3300006847 Bacteria 1364
38 Ga0075429_100001411 3300006880 Bacteria 19674
39 Ga0105245_10116696 3300009098 Bacteria 2489
40 Ga0114129_10010842 3300009147 Bacteria 12985
41 Ga0114129_10026788 3300009147 Bacteria 8163
42 Ga0114129_10048568 3300009147 Bacteria 5963
43 Ga0114129_10361800 3300009147 Bacteria 1920
44 Ga0105243_10050322 3300009148 Bacteria 3291
45 Ga0105243_10320403 3300009148 Bacteria 1412
46 Ga0105241_10245129 3300009174 Bacteria 1517
47 Ga0105249_10151302 3300009553 Bacteria 2234
48 Ga0157369_10070560 3300013105 Bacteria 3753
49 Ga0157375_10000055 3300013308 Bacteria 126704
50 Ga0157380_10092176 3300014326 Bacteria 2503
51 Ga0157380_10326920 3300014326 Bacteria 1424
52 Ga0157379_10016454 3300014968 Bacteria 6505
53 Ga0207693_10073829 3300025915 Bacteria 2670
54 Ga0207681_10027177 3300025923 Bacteria 3698
55 Ga0207664_10031159 3300025929 Bacteria 4077
56 Ga0207704_10098441 3300025938 Bacteria 1943
57 Ga0207691_10000575 3300025940 Bacteria 36701
58 Ga0207691_10151328 3300025940 Bacteria 2040
59 Ga0207679_10011547 3300025945 Bacteria 5727
60 Ga0207667_10056955 3300025949 Bacteria 4104
61 Ga0207677_10079693 3300026023 Bacteria 2343
62 Ga0207703_10230706 3300026035 Bacteria 1659
63 Ga0207639_10007699 3300026041 Bacteria 7354
64 Ga0207648_10038191 3300026089 Bacteria 4226
65 Ga0207675_100092941 3300026118 Bacteria 2837
66 Ga0209813_10000434 3300027866 Bacteria 10223
67 Ga0268266_10005479 3300028379 Bacteria 11820
68 Ga0268266_10047036 3300028379 Bacteria 3694
69 Ga0265326_10000523 3300028558 Bacteria 14669
70 Ga0265319_1000094 3300028563 Bacteria 68209
71 Ga0265318_10001244 3300028577 Bacteria 15462
72 Ga0265336_10000019 3300028666 Bacteria 218636
73 Ga0265338_10000413 3300028800 Bacteria 76430
74 Ga0265324_10008788 3300029957 Bacteria 3984
75 Ga0265325_10000938 3300031241 Bacteria 21048
76 Ga0265340_10000004 3300031247 Bacteria 218649
77 Ga0265316_10014723 3300031344 Bacteria 6867
78 Ga0307413_10031801 3300031824 Bacteria 2983
79 Ga0307407_10154563 3300031903 Bacteria 1495
80 Ga0307409_100027034 3300031995 Bacteria 4059
81 Ga0307409_100176996 3300031995 Bacteria 1884
82 Ga0307409_100471519 3300031995 Bacteria 1216
83 Ga0307416_100464772 3300032002 Bacteria 1321
84 Ga0307414_10116615 3300032004 Bacteria 2045
85 Ga0307411_10411495 3300032005 Bacteria 1121
86 Ga0307415_100054580 3300032126 Bacteria 2729
87 Ga0373946_0032886 3300035171 Bacteria 2085
88 Ga0373927_0087605 3300035695 Bacteria 2021
89 Ga0373925_0043882 3300037068 Bacteria 3320
90 Ga0395900_0072425 3300037418 Bacteria 3543
91 Ga0395905_0105201 3300037471 Bacteria 2650
92 Ga0395901_0026925 3300038443 Bacteria 5904
93 Ga0466971_0117777 3300044719 Bacteria 1228
94 Ga0466960_0000057 3300044901 Bacteria 37406
95 Ga0466960_0140378 3300044901 Bacteria 1283
96 Ga0466967_0049478 3300045976 Bacteria 3676
97 Ga0466967_0101722 3300045976 Bacteria 2627
98 Ga0466967_0156000 3300045976 Bacteria 2138
99 Ga0466967_0288431 3300045976 Bacteria 1576
100 Ga0495590_0011370 3300046457 Bacteria 3330
101 Ga0495629_0122923 3300046459 Bacteria 1808
102 Ga0495584_0013958 3300046491 Bacteria 4093
103 Ga0495632_0059558 3300046519 Bacteria 1858
104 Ga0495652_0116829 3300046529 Bacteria 2135
105 Ga0495634_0127299 3300046642 Bacteria 1627
106 Ga0495611_0064356 3300046648 Bacteria 1670
107 Ga0495635_0119544 3300046663 Bacteria 1798
108 Ga0495581_0056385 3300047315 Bacteria 2268
109 Ga0495684_0057644 3300047471 Bacteria 2960
110 Ga0496100_0127530 3300048903 Bacteria 1788
111 Ga0496101_0035773 3300048904 Bacteria 3514
112 Ga0496102_0036651 3300048905 Bacteria 4419
113 Ga0496104_0062619 3300048907 Bacteria 3527
114 Ga0496106_0164793 3300048909 Bacteria 1754
115 Ga0496107_0060473 3300048910 Bacteria 2742
116 Ga0496107_0121444 3300048910 Bacteria 1925
117 Ga0496108_0016026 3300048911 Bacteria 6110
118 Ga0496108_0234220 3300048911 Bacteria 1597
119 Ga0496108_0258481 3300048911 Bacteria 1515
120 Ga0496109_0011232 3300048912 Bacteria 7689
121 Ga0496109_0196068 3300048912 Bacteria 1898
122 Ga0496110_0002966 3300048913 Bacteria 12866
123 Ga0496111_0123241 3300048914 Bacteria 1915
124 Ga0496112_0010305 3300048915 Bacteria 8475
125 Ga0496112_0015522 3300048915 Bacteria 7114
126 Ga0496112_0056991 3300048915 Bacteria 3846
127 Ga0496112_0300387 3300048915 Bacteria 1551
128 Ga0496113_0013951 3300048916 Bacteria 5464
129 Ga0496115_0000068 3300048918 Bacteria 93725
130 Ga0496115_0015121 3300048918 Bacteria 5849
131 Ga0496119_0058798 3300048922 Bacteria 2314
132 Ga0496120_0119342 3300048923 Unclassified 1366
133 Ga0496121_0026632 3300048924 Bacteria 5439
134 Ga0496126_0004148 3300048929 Bacteria 17517
135 Ga0501036_0141027 3300049572 Bacteria 2034
136 Ga0501040_0032538 3300049576 Bacteria 3529
137 Ga0501040_0133323 3300049576 Bacteria 1748
138 Ga0501041_0121849 3300049577 Bacteria 1621
139 Ga0501041_0276293 3300049577 Bacteria 1057
140 Ga0501073_0188036 3300049589 Bacteria 1429
141 Ga0501074_0061968 3300049590 Bacteria 2695
142 Ga0501079_0167016 3300049741 Bacteria 1716
143 Ga0501080_0257009 3300049742 Bacteria 1592
144 Ga0501081_0018396 3300049743 Bacteria 4641
145 Ga0501081_0087045 3300049743 Bacteria 2194
146 Ga0501083_0109739 3300049744 Bacteria 1815
147 Ga0501045_0116417 3300049824 Bacteria 1983
148 nmdc:mga03683_3638_c1 3300050489 Bacteria 5009
149 nmdc:mga03n38_18759_c1 3300050490 Bacteria 2736
150 nmdc:mga00v17_39900_c1 3300050491 Bacteria 2814
151 nmdc:mga06z11_3524_c1 3300050494 Bacteria 6062
152 nmdc:mga04h51_424_c1 3300050495 Bacteria 10156
153 nmdc:mga07m45_3625_c1 3300050496 Bacteria 7462
154 nmdc:mga05p37_297335_c1 3300050507 Bacteria 1919
155 nmdc:mga05p37_52254_c2 3300050507 Bacteria 3980
156 nmdc:mga09592_17902_c1 3300050508 Bacteria 5805
157 nmdc:mga09592_25266_c1 3300050508 Bacteria 4915
158 nmdc:mga0qj67_50808_c1 3300050509 Bacteria 3279
159 nmdc:mga06r32_328375_c1 3300050510 Bacteria 1515
160 nmdc:mga06r32_60062_c1 3300050510 Bacteria 3658
161 nmdc:mga0rr50_158808_c1 3300050513 Bacteria 1833
162 Ga0495601_0095137 3300053077 Bacteria 1920
163 Ga0495619_0114057 3300053085 Bacteria 1849
164 Ga0501084_0078283 3300054114 Bacteria 2771
165 Ga0466962_0059060 3300061719 Bacteria 1830
166 Ga0530510_0071050 3300061734 Bacteria 2526
167 Ga0265327_10001901
168 Ga0070658_10002944
169 Ga0070682_100184246
170 Ga0070691_10053770
171 Ga0070669_100034965
172 Ga0070674_100001843
173 Ga0070674_100187499
174 Ga0070713_100481560
175 Ga0070708_100102520
176 Ga0068867_100025067
177 Ga0070684_100297967
178 Ga0070697_100008977
179 Ga0068853_100000337
180 Ga0070672_100000409
181 Ga0070665_100006107
182 Ga0070665_100010745
183 Ga0068855_100001138
184 Ga0070664_100018707
185 Ga0070664_100290086
186 Ga0068856_100108086
187 Ga0068852_100105849
188 Ga0068864_100394725
189 Ga0068866_10062977
190 Ga0081455_10024541
191 Ga0075363_100000245
192 Ga0075364_10039931
193 Ga0070712_100086503
194 Ga0075362_10001027
195 Ga0075367_10002803
196 Ga0075369_10019350
197 Ga0075366_10002093
198 Ga0075370_10009155
199 Ga0075428_100023194
200 Ga0075428_100025179
201 Ga0075428_100337351
202 Ga0075431_100010987
203 Ga0075431_100405463
204 Ga0075429_100001411
205 Ga0105245_10116696
206 Ga0114129_10010842
207 Ga0114129_10026788
208 Ga0114129_10048568
209 Ga0114129_10361800
210 Ga0105243_10050322
211 Ga0105243_10320403
212 Ga0105241_10245129
213 Ga0105249_10151302
214 Ga0157369_10070560
215 Ga0157375_10000055
216 Ga0157380_10092176
217 Ga0157380_10326920
218 Ga0157379_10016454
219 Ga0207693_10073829
220 Ga0207681_10027177
221 Ga0207664_10031159
222 Ga0207704_10098441
223 Ga0207691_10000575
224 Ga0207691_10151328
225 Ga0207679_10011547
226 Ga0207667_10056955
227 Ga0207677_10079693
228 Ga0207703_10230706
229 Ga0207639_10007699
230 Ga0207648_10038191
231 Ga0207675_100092941
232 Ga0209813_10000434
233 Ga0268266_10005479
234 Ga0268266_10047036
235 Ga0265326_10000523
236 Ga0265319_1000094
237 Ga0265318_10001244
238 Ga0265336_10000019
239 Ga0265338_10000413
240 Ga0265324_10008788
241 Ga0265325_10000938
242 Ga0265340_10000004
243 Ga0265316_10014723
244 Ga0307413_10031801
245 Ga0307407_10154563
246 Ga0307409_100027034
247 Ga0307409_100176996
248 Ga0307409_100471519
249 Ga0307416_100464772
250 Ga0307414_10116615
251 Ga0307411_10411495
252 Ga0307415_100054580
253 Ga0373946_0032886
254 Ga0373927_0087605
255 Ga0373925_0043882
256 Ga0395900_0072425
257 Ga0395905_0105201
258 Ga0395901_0026925
259 Ga0466971_0117777
260 Ga0466960_0000057
261 Ga0466960_0140378
262 Ga0466967_0049478
263 Ga0466967_0101722
264 Ga0466967_0156000
265 Ga0466967_0288431
266 Ga0495590_0011370
267 Ga0495629_0122923
268 Ga0495584_0013958
269 Ga0495632_0059558
270 Ga0495652_0116829
271 Ga0495634_0127299
272 Ga0495611_0064356
273 Ga0495635_0119544
274 Ga0495581_0056385
275 Ga0495684_0057644
276 Ga0496100_0127530
277 Ga0496101_0035773
278 Ga0496102_0036651
279 Ga0496104_0062619
280 Ga0496106_0164793
281 Ga0496107_0060473
282 Ga0496107_0121444
283 Ga0496108_0016026
284 Ga0496108_0234220
285 Ga0496108_0258481
286 Ga0496109_0011232
287 Ga0496109_0196068
288 Ga0496110_0002966
289 Ga0496111_0123241
290 Ga0496112_0010305
291 Ga0496112_0015522
292 Ga0496112_0056991
293 Ga0496112_0300387
294 Ga0496113_0013951
295 Ga0496115_0000068
296 Ga0496115_0015121
297 Ga0496119_0058798
298 Ga0496120_0119342
299 Ga0496121_0026632
300 Ga0496126_0004148
301 Ga0501036_0141027
302 Ga0501040_0032538
303 Ga0501040_0133323
304 Ga0501041_0121849
305 Ga0501041_0276293
306 Ga0501073_0188036
307 Ga0501074_0061968
308 Ga0501079_0167016
309 Ga0501080_0257009
310 Ga0501081_0018396
311 Ga0501081_0087045
312 Ga0501083_0109739
313 Ga0501045_0116417
314 nmdc:mga03683_3638_c1
315 nmdc:mga03n38_18759_c1
316 nmdc:mga00v17_39900_c1
317 nmdc:mga06z11_3524_c1
318 nmdc:mga04h51_424_c1
319 nmdc:mga07m45_3625_c1
320 nmdc:mga05p37_297335_c1
321 nmdc:mga05p37_52254_c2
322 nmdc:mga09592_17902_c1
323 nmdc:mga09592_25266_c1
324 nmdc:mga0qj67_50808_c1
325 nmdc:mga06r32_328375_c1
326 nmdc:mga06r32_60062_c1
327 nmdc:mga0rr50_158808_c1
328 Ga0495601_0095137
329 Ga0495619_0114057
330 Ga0501084_0078283
331 Ga0466962_0059060
332 Ga0530510_0071050

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

55

303

0.88

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

55

186

0.87

PF04321

RmlD_sub_bind

RmlD substrate binding domain

53

220

0.83

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

56

369

0.8

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

56

293

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
1wvg-assembly1.cif.gz_A-2 structure of cdp-d-glucose 4,6-dehydratase from salmonella typhi 0.962 3 346
1rkx-assembly1.cif.gz_D crystal structure at 1.8 angstrom of cdp-d-glucose 4,6-dehydratase from yersinia pseudotuberculosis 0.9472 1 349
1rkx-assembly1.cif.gz_D crystal structure at 1.8 angstrom of cdp-d-glucose 4,6-dehydratase from yersinia pseudotuberculosis 0.9445 1 349
1wvg-assembly1.cif.gz_A-2 structure of cdp-d-glucose 4,6-dehydratase from salmonella typhi 0.943 3 346
1rkx-assembly1.cif.gz_B crystal structure at 1.8 angstrom of cdp-d-glucose 4,6-dehydratase from yersinia pseudotuberculosis 0.9397 1 349
ID Description Score Start End Superfamily
1rkxC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9684 1 186 3.40.50.720
af_O15229_1_369_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9518 8 39 3.50.50.60
1rkxC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9338 1 186 3.40.50.720
1wvgA02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9267 188 346 3.90.25.10
1wvgA02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9098 188 346 3.90.25.10
ID Description Score Start End GO Terms
AF-A0A7V2TWI8-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9765 3 130
AF-A0A2D7NE60-F1-model_v4 CDP-glucose 4,6-dehydratase 0.9763 1 349
AF-A0A1F9VDU5-F1-model_v4 CDP-glucose 4,6-dehydratase 0.9762 2 204
AF-A0A1J9WTL6-F1-model_v4 deleted 0.9747 3 348
AF-A0A5C7P5Y9-F1-model_v4 CDP-glucose 4,6-dehydratase (EC 4.2.1.45) 0.9715 3 222 GO:0047733

Map