F249456

General Info

Members Datasets Scaffolds Average Seq Length
166 112 162 504

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2919138771|2919141234
Length 529
Sequence PSQDLDASEFAVEDNSPSPATPPPLHGAALFSAAFALALGTFMQVLDSTIANVALNTISGNLGEASSTATWVITAFAVANGVTVPLTGWLMRRFGVVNTFIASVALFTLASFLCGIAWSLPSLIVFRLLQGAVSGPMIPGSQALLLAIFPPEKRTVGLSIWSMTALVGPVLGPILGGYISDNYHWGWIFLINVPVGFITVGVLMARMRAYNTPPVKLPFDWGGVALLILWVGSLQVVLDLGKDEDWFNSTFICALSVVAVLGFFAWLIWELTEEHPAVDLTLFKSRNFAIGTLCFCLGYGFFFASNLLMPLWLQTQQGYTATWAGLVSAPAGMVAFLLAPLVARAAGTLDLRYVATYALLAFAVSYMMRTGFAPDTDLWHFVLPSIVQGTAMGTFFMSMTTLSFDRLGPHRIPSATGISNFARITGGAFAASITTTFWDRREVLHQSRLAEAANPGNPAYVQAMDHLQTIGMSKAQATGALTGQMVNQSYLLSSLDIFWFAGMGCIAMLALLWCTRKPAPPQGGAVVVD

Samples

Sample ID Description Type Environment
1 2739367756 Asticcacaulis sp. CF398 Isolate Unclassified
2 2846037992 Chromobacterium alticapitis MWU14-2602 Isolate Rhizosphere
3 2919138771 Novosphingobium sp. 1748 Isolate Rhizosphere
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
20 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
21 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
24 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
35 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
36 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
37 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
38 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
57 3300028016 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 Metagenome Rhizosphere
58 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
61 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
62 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
63 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
64 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
65 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
66 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
67 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
68 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
69 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
70 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
71 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
72 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
73 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
74 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
75 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
76 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
77 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
78 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
79 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
80 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
81 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
82 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
83 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
84 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
85 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
86 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
87 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
88 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
94 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
95 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
96 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
97 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
98 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
99 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
101 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
102 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
103 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
104 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
105 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
106 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
107 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
108 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
109 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
110 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
111 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
112 8057101203 Sphingomonas lycopersici MMSM20 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.39
Metatranscriptomes 1.2
Isolates 2.41

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.61
Nodule 0
Rhizoplane 2.41
Rhizosphere 83.73
Stem 0
Stem Tuber 0
Unclassified 10.24

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10222567 3300003323 Bacteria 5677
2 Ga0070658_10183659 3300005327 Bacteria 1760
3 Ga0070670_100050901 3300005331 Bacteria 3558
4 Ga0070680_100003311 3300005336 Bacteria 12019
5 Ga0070660_100078421 3300005339 Bacteria 2590
6 Ga0070668_100033583 3300005347 Bacteria 3908
7 Ga0070671_100117666 3300005355 Bacteria 2235
8 Ga0070659_100000056 3300005366 Bacteria 88478
9 Ga0070659_100002043 3300005366 Bacteria 14431
10 Ga0070667_100019781 3300005367 Bacteria 5586
11 Ga0070681_10002800 3300005458 Bacteria 16108
12 Ga0070681_10003072 3300005458 Bacteria 15490
13 Ga0070679_100013379 3300005530 Bacteria 7857
14 Ga0068853_100003474 3300005539 Bacteria 12052
15 Ga0070665_100000015 3300005548 Bacteria 462744
16 Ga0070665_100018084 3300005548 Bacteria 7075
17 Ga0068855_100007318 3300005563 Bacteria 13375
18 Ga0068855_100023184 3300005563 Bacteria 7436
19 Ga0068855_100200031 3300005563 Bacteria 2250
20 Ga0068852_100072969 3300005616 Bacteria 3018
21 Ga0068858_100023356 3300005842 Bacteria 5761
22 Ga0068860_100000481 3300005843 Bacteria 49480
23 Ga0075428_100007822 3300006844 Bacteria 11849
24 Ga0075431_100000070 3300006847 Bacteria 59538
25 Ga0075429_100003436 3300006880 Bacteria 13516
26 Ga0099795_10000070 3300007788 Bacteria 18141
27 Ga0105240_10000305 3300009093 Bacteria 94979
28 Ga0105240_10015943 3300009093 Bacteria 10192
29 Ga0105240_10025811 3300009093 Bacteria 7716
30 Ga0105240_10033758 3300009093 Bacteria 6607
31 Ga0105240_10035245 3300009093 Bacteria 6450
32 Ga0105240_10045627 3300009093 Bacteria 5558
33 Ga0111539_10000846 3300009094 Bacteria 39900
34 Ga0111539_10003956 3300009094 Bacteria 19465
35 Ga0105242_10046556 3300009176 Bacteria 3519
36 Ga0105248_10000001 3300009177 Bacteria 1881304
37 Ga0105248_10185676 3300009177 Bacteria 2343
38 Ga0105237_10030410 3300009545 Bacteria 5485
39 Ga0105237_10156278 3300009545 Bacteria 2278
40 Ga0105238_10130449 3300009551 Bacteria 2492
41 Ga0105238_10146019 3300009551 Bacteria 2342
42 Ga0105249_10247184 3300009553 Bacteria 1766
43 Ga0099796_10001721 3300010159 Bacteria 4546
44 Ga0105239_10000037 3300010375 Bacteria 206779
45 Ga0105239_10320276 3300010375 Bacteria 1748
46 Ga0157370_10079694 3300013104 Bacteria 3084
47 Ga0157374_10108099 3300013296 Bacteria 2673
48 Ga0213875_10002724 3300021388 Bacteria 10431
49 Ga0209233_1007011 3300025261 Bacteria 3599
50 Ga0207680_10004543 3300025903 Bacteria 6587
51 Ga0207705_10000362 3300025909 Bacteria 41196
52 Ga0207707_10004497 3300025912 Bacteria 12267
53 Ga0207695_10000657 3300025913 Bacteria 68406
54 Ga0207695_10000695 3300025913 Bacteria 65865
55 Ga0207695_10003989 3300025913 Bacteria 20367
56 Ga0207695_10040950 3300025913 Bacteria 4961
57 Ga0207671_10002450 3300025914 Bacteria 19861
58 Ga0207660_10000670 3300025917 Bacteria 22876
59 Ga0207657_10000944 3300025919 Bacteria 30787
60 Ga0207649_10043956 3300025920 Bacteria 2734
61 Ga0207652_10001877 3300025921 Bacteria 18242
62 Ga0207652_10067759 3300025921 Bacteria 3095
63 Ga0207694_10061341 3300025924 Bacteria 2926
64 Ga0207690_10000104 3300025932 Bacteria 68527
65 Ga0207690_10003231 3300025932 Bacteria 9786
66 Ga0207711_10000001 3300025941 Bacteria 1325674
67 Ga0207711_10145568 3300025941 Bacteria 2135
68 Ga0207667_10008664 3300025949 Bacteria 12059
69 Ga0207667_10013097 3300025949 Bacteria 9518
70 Ga0207667_10083343 3300025949 Bacteria 3311
71 Ga0207668_10049391 3300025972 Bacteria 2892
72 Ga0207658_10015762 3300025986 Bacteria 5189
73 Ga0207703_10016156 3300026035 Bacteria 5818
74 Ga0207639_10060374 3300026041 Bacteria 2925
75 Ga0207639_10089114 3300026041 Bacteria 2464
76 Ga0207676_10059728 3300026095 Bacteria 3012
77 Ga0207428_10008294 3300027907 Bacteria 9391
78 Ga0207428_10015887 3300027907 Bacteria 6494
79 Ga0265354_1002039 3300028016 Bacteria 2635
80 Ga0268266_10000005 3300028379 Bacteria 1448194
81 Ga0268266_10023537 3300028379 Bacteria 5242
82 Ga0268264_10000025 3300028381 Bacteria 468619
83 Ga0265334_10000441 3300028573 Bacteria 21780
84 Ga0265318_10000056 3300028577 Bacteria 113159
85 Ga0307517_10004846 3300028786 Bacteria 20520
86 Ga0265338_10007290 3300028800 Bacteria 13799
87 Ga0265338_10008096 3300028800 Bacteria 12843
88 Ga0265770_1000821 3300030878 Bacteria 4301
89 Ga0265760_10015215 3300031090 Bacteria 2205
90 Ga0265328_10001744 3300031239 Bacteria 9953
91 Ga0265327_10001787 3300031251 Bacteria 25269
92 Ga0265314_10041909 3300031711 Bacteria 3271
93 Ga0316576_10034628 3300031727 Bacteria 3600
94 Ga0316576_10148432 3300031727 Bacteria 1767
95 Ga0307516_10000067 3300031730 Bacteria 111575
96 Ga0307510_10004057 3300033180 Bacteria 17176
97 Ga0316574_0001748 3300035398 Bacteria 10518
98 Ga0395905_0086977 3300037471 Bacteria 2930
99 Ga0436364_1455316 3300037853 Bacteria 25171
100 Ga0439448_0018372 3300042005 Bacteria 2142
101 Ga0451577_0021124 3300042876 Bacteria 5961
102 Ga0466966_0031448 3300044684 Bacteria 3442
103 Ga0495668_0005486 3300046616 Bacteria 8582
104 Ga0495668_0012571 3300046616 Bacteria 5020
105 Ga0495672_0001096 3300047320 Bacteria 27499
106 Ga0495672_0091606 3300047320 Bacteria 1668
107 Ga0496102_0067387 3300048905 Bacteria 3283
108 Ga0496115_0002386 3300048918 Bacteria 13467
109 Ga0496115_0002726 3300048918 Bacteria 12689
110 Ga0496115_0025499 3300048918 Bacteria 4604
111 Ga0496117_0000067 3300048920 Bacteria 249348
112 Ga0496118_0000021 3300048921 Bacteria 444988
113 Ga0496118_0007472 3300048921 Bacteria 11566
114 Ga0496119_0094874 3300048922 Bacteria 1687
115 Ga0496121_0000066 3300048924 Bacteria 267065
116 Ga0496121_0035461 3300048924 Bacteria 4471
117 Ga0496124_0024425 3300048927 Bacteria 5494
118 Ga0496126_0002819 3300048929 Bacteria 22792
119 Ga0496126_0002845 3300048929 Bacteria 22641
120 Ga0496126_0004559 3300048929 Bacteria 16459
121 Ga0501031_0004153 3300049568 Bacteria 9353
122 Ga0501034_0033809 3300049571 Bacteria 5183
123 Ga0501034_0134946 3300049571 Bacteria 2449
124 Ga0501034_0163676 3300049571 Bacteria 2194
125 Ga0501036_0161585 3300049572 Bacteria 1888
126 Ga0501047_0001710 3300049581 Bacteria 21340
127 Ga0501047_0004116 3300049581 Bacteria 13687
128 Ga0501047_0038025 3300049581 Bacteria 4655
129 Ga0501047_0068696 3300049581 Bacteria 3413
130 Ga0501047_0093400 3300049581 Bacteria 2887
131 Ga0501047_0181872 3300049581 Bacteria 1969
132 Ga0501048_0102655 3300049582 Bacteria 2018
133 Ga0501067_0019621 3300049583 Bacteria 3742
134 Ga0501067_0060000 3300049583 Bacteria 2105
135 Ga0501069_0030500 3300049585 Bacteria 2961
136 Ga0501073_0003416 3300049589 Bacteria 11944
137 Ga0501074_0029468 3300049590 Bacteria 3976
138 Ga0501074_0140209 3300049590 Bacteria 1729
139 Ga0501079_0043076 3300049741 Bacteria 3484
140 Ga0501080_0024288 3300049742 Bacteria 5620
141 Ga0501080_0031492 3300049742 Bacteria 4942
142 Ga0501080_0036639 3300049742 Bacteria 4579
143 Ga0501035_0019910 3300049822 Bacteria 6164
144 Ga0501035_0032971 3300049822 Bacteria 4711
145 Ga0501035_0062102 3300049822 Bacteria 3324
146 Ga0501035_0143225 3300049822 Bacteria 2077
147 Ga0501035_0166752 3300049822 Bacteria 1904
148 Ga0501044_0003053 3300049823 Bacteria 18939
149 Ga0501044_0024800 3300049823 Bacteria 6362
150 nmdc:mga05p37_33393_c1 3300050507 Bacteria 6302
151 nmdc:mga09592_1417_c1 3300050508 Bacteria 19231
152 nmdc:mga06r32_127_c1 3300050510 Bacteria 55298
153 nmdc:mga08y16_245_c1 3300050511 Bacteria 48774
154 nmdc:mga08y16_778_c1 3300050511 Bacteria 30441
155 Ga0500592_000293 3300053116 Bacteria 8758
156 Ga0500568_0016799 3300053139 Bacteria 3243
157 Ga0500588_0002152 3300053146 Bacteria 3943
158 Ga0500619_000993 3300053154 Bacteria 4888
159 Ga0500622_0000944 3300053156 Bacteria 24711
160 Ga0501084_0007152 3300054114 Bacteria 9194
161 Ga0501082_0004159 3300060353 Bacteria 12648
162 Ga0501082_0029728 3300060353 Bacteria 4708

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049581 Ga0501047_0038025 Ga0501047_0038025_2695_4242 404
2 3300049742 Ga0501080_0031492 Ga0501080_0031492_324_1871 404
3 3300049822 Ga0501035_0032971 Ga0501035_0032971_1059_2606 404
4 3300049823 Ga0501044_0003053 Ga0501044_0003053_4874_6421 404
5 3300049822 Ga0501035_0019910 Ga0501035_0019910_4775_6151 429
6 3300044684 Ga0466966_0031448 Ga0466966_0031448_418_1968 432
7 3300046616 Ga0495668_0012571 Ga0495668_0012571_1250_2794 450
8 3300048921 Ga0496118_0007472 Ga0496118_0007472_6348_7877 452
9 3300025914 Ga0207671_10002450 Ga0207671_1000245025 453
10 3300048922 Ga0496119_0094874 Ga0496119_0094874_239_1669 453
11 3300026095 Ga0207676_10059728 Ga0207676_100597281 454
12 3300031251 Ga0265327_10001787 Ga0265327_1000178713 455
13 3300049581 Ga0501047_0181872 Ga0501047_0181872_15_1451 455
14 3300047320 Ga0495672_0001096 Ga0495672_0001096_11168_12721 457
15 3300049822 Ga0501035_0062102 Ga0501035_0062102_1215_2756 457
16 3300025261 Ga0209233_1007011 Ga0209233_10070114 458
17 3300028573 Ga0265334_10000441 Ga0265334_100004416 458
18 3300005347 Ga0070668_100033583 Ga0070668_1000335833 459
19 3300005842 Ga0068858_100023356 Ga0068858_1000233562 459
20 3300021388 Ga0213875_10002724 Ga0213875_100027242 459
21 3300025972 Ga0207668_10049391 Ga0207668_100493912 459
22 3300026035 Ga0207703_10016156 Ga0207703_100161565 459
23 3300037853 Ga0436364_1455316 Ga0436364_1455316_17541_19070 459
24 3300047320 Ga0495672_0091606 Ga0495672_0091606_117_1631 459
25 3300048929 Ga0496126_0002845 Ga0496126_0002845_11665_13203 459
26 3300005336 Ga0070680_100003311 Ga0070680_1000033119 460
27 3300005458 Ga0070681_10003072 Ga0070681_1000307210 460
28 3300005548 Ga0070665_100000015 Ga0070665_100000015285 460
29 3300005563 Ga0068855_100007318 Ga0068855_1000073188 460
30 3300025909 Ga0207705_10000362 Ga0207705_100003623 460
31 3300025912 Ga0207707_10004497 Ga0207707_100044978 460
32 3300025917 Ga0207660_10000670 Ga0207660_1000067018 460
33 3300025921 Ga0207652_10001877 Ga0207652_1000187710 460
34 3300025949 Ga0207667_10008664 Ga0207667_100086643 460
35 3300028379 Ga0268266_10000005 Ga0268266_10000005833 460
36 3300028800 Ga0265338_10007290 Ga0265338_100072907 460
37 3300048918 Ga0496115_0002386 Ga0496115_0002386_2156_3712 460
38 3300005327 Ga0070658_10183659 Ga0070658_101836591 461
39 3300009093 Ga0105240_10035245 Ga0105240_100352454 461
40 3300009093 Ga0105240_10000305 Ga0105240_100003052 462
41 3300010375 Ga0105239_10000037 Ga0105239_1000003787 462
42 3300025913 Ga0207695_10000657 Ga0207695_100006572 462
43 3300042005 Ga0439448_0018372 Ga0439448_0018372_576_2033 462
44 3300048924 Ga0496121_0000066 Ga0496121_0000066_109813_111342 462
45 3300048929 Ga0496126_0002819 Ga0496126_0002819_9254_10783 462
46 3300013296 Ga0157374_10108099 Ga0157374_101080992 463
47 3300048918 Ga0496115_0025499 Ga0496115_0025499_12_1475 463
48 3300009551 Ga0105238_10146019 Ga0105238_101460192 465
49 3300009553 Ga0105249_10247184 Ga0105249_102471842 465
50 3300049571 Ga0501034_0033809 Ga0501034_0033809_1490_3052 466
51 3300009093 Ga0105240_10045627 Ga0105240_100456273 468
52 3300025913 Ga0207695_10040950 Ga0207695_100409504 468
53 3300005355 Ga0070671_100117666 Ga0070671_1001176662 470
54 3300005367 Ga0070667_100019781 Ga0070667_1000197813 470
55 3300005843 Ga0068860_100000481 Ga0068860_10000048120 470
56 3300009093 Ga0105240_10015943 Ga0105240_100159438 470
57 3300009177 Ga0105248_10185676 Ga0105248_101856762 470
58 3300025903 Ga0207680_10004543 Ga0207680_100045433 470
59 3300025913 Ga0207695_10003989 Ga0207695_1000398910 470
60 3300025941 Ga0207711_10145568 Ga0207711_101455682 470
61 3300025949 Ga0207667_10083343 Ga0207667_100833432 470
62 3300025986 Ga0207658_10015762 Ga0207658_100157623 470
63 3300026041 Ga0207639_10060374 Ga0207639_100603743 470
64 3300028381 Ga0268264_10000025 Ga0268264_10000025167 470
65 3300028577 Ga0265318_10000056 Ga0265318_1000005664 470
66 3300028786 Ga0307517_10004846 Ga0307517_100048462 470
67 3300028800 Ga0265338_10008096 Ga0265338_100080969 470
68 3300031239 Ga0265328_10001744 Ga0265328_100017445 470
69 3300005616 Ga0068852_100072969 Ga0068852_1000729692 471
70 3300009093 Ga0105240_10033758 Ga0105240_100337583 471
71 3300009176 Ga0105242_10046556 Ga0105242_100465562 471
72 3300009177 Ga0105248_10000001 Ga0105248_10000001878 471
73 3300009545 Ga0105237_10156278 Ga0105237_101562781 471
74 3300009551 Ga0105238_10130449 Ga0105238_101304492 471
75 3300025920 Ga0207649_10043956 Ga0207649_100439562 471
76 3300025941 Ga0207711_10000001 Ga0207711_10000001993 471
77 3300031711 Ga0265314_10041909 Ga0265314_100419092 471
78 3300033180 Ga0307510_10004057 Ga0307510_100040576 471
79 3300049572 Ga0501036_0161585 Ga0501036_0161585_279_1832 471
80 3300049581 Ga0501047_0004116 Ga0501047_0004116_3012_4565 471
81 3300049581 Ga0501047_0093400 Ga0501047_0093400_128_1681 471
82 3300049582 Ga0501048_0102655 Ga0501048_0102655_401_1954 471
83 3300049583 Ga0501067_0019621 Ga0501067_0019621_1485_3038 471
84 3300049583 Ga0501067_0060000 Ga0501067_0060000_233_1786 471
85 3300049585 Ga0501069_0030500 Ga0501069_0030500_1334_2887 471
86 3300049589 Ga0501073_0003416 Ga0501073_0003416_300_1853 471
87 3300049590 Ga0501074_0140209 Ga0501074_0140209_43_1596 471
88 3300049741 Ga0501079_0043076 Ga0501079_0043076_437_1990 471
89 3300049742 Ga0501080_0024288 Ga0501080_0024288_1927_3477 471
90 3300053154 Ga0500619_000993 Ga0500619_000993_1674_3227 471
91 3300054114 Ga0501084_0007152 Ga0501084_0007152_4041_5594 471
92 3300060353 Ga0501082_0029728 Ga0501082_0029728_1873_3426 471
93 iso_pu_bacteria 8057101203 8057104243 471
94 iso_pu_bacteria 2846037992 2846042106 472
95 3300010375 Ga0105239_10320276 Ga0105239_103202762 473
96 3300049571 Ga0501034_0134946 Ga0501034_0134946_425_1999 473
97 3300006844 Ga0075428_100007822 Ga0075428_1000078226 475
98 3300006847 Ga0075431_100000070 Ga0075431_1000000709 475
99 3300006880 Ga0075429_100003436 Ga0075429_1000034369 475
100 3300009094 Ga0111539_10000846 Ga0111539_100008468 475
101 3300009094 Ga0111539_10003956 Ga0111539_1000395617 475
102 3300027907 Ga0207428_10008294 Ga0207428_100082947 475
103 3300027907 Ga0207428_10015887 Ga0207428_100158876 475
104 3300050507 nmdc:mga05p37_33393_c1 nmdc:mga05p37_33393_c1_1921_3465 475
105 3300050508 nmdc:mga09592_1417_c1 nmdc:mga09592_1417_c1_10562_12106 475
106 3300050510 nmdc:mga06r32_127_c1 nmdc:mga06r32_127_c1_44595_46139 475
107 3300050511 nmdc:mga08y16_245_c1 nmdc:mga08y16_245_c1_43699_45243 475
108 3300050511 nmdc:mga08y16_778_c1 nmdc:mga08y16_778_c1_19127_20668 475
109 3300003323 rootH1_10222567 rootH1_102225671 476
110 3300005331 Ga0070670_100050901 Ga0070670_1000509012 476
111 3300005339 Ga0070660_100078421 Ga0070660_1000784212 476
112 3300005366 Ga0070659_100000056 Ga0070659_10000005632 476
113 3300005366 Ga0070659_100002043 Ga0070659_1000020438 476
114 3300005458 Ga0070681_10002800 Ga0070681_100028006 476
115 3300005530 Ga0070679_100013379 Ga0070679_1000133798 476
116 3300005539 Ga0068853_100003474 Ga0068853_1000034743 476
117 3300005548 Ga0070665_100018084 Ga0070665_1000180843 476
118 3300005563 Ga0068855_100023184 Ga0068855_1000231842 476
119 3300005563 Ga0068855_100200031 Ga0068855_1002000312 476
120 3300007788 Ga0099795_10000070 Ga0099795_1000007012 476
121 3300009093 Ga0105240_10025811 Ga0105240_100258118 476
122 3300009545 Ga0105237_10030410 Ga0105237_100304102 476
123 3300010159 Ga0099796_10001721 Ga0099796_100017212 476
124 3300013104 Ga0157370_10079694 Ga0157370_100796942 476
125 3300025913 Ga0207695_10000695 Ga0207695_1000069522 476
126 3300025919 Ga0207657_10000944 Ga0207657_1000094426 476
127 3300025921 Ga0207652_10067759 Ga0207652_100677592 476
128 3300025924 Ga0207694_10061341 Ga0207694_100613412 476
129 3300025932 Ga0207690_10000104 Ga0207690_1000010461 476
130 3300025932 Ga0207690_10003231 Ga0207690_100032312 476
131 3300025949 Ga0207667_10013097 Ga0207667_100130975 476
132 3300026041 Ga0207639_10089114 Ga0207639_100891143 476
133 3300028016 Ga0265354_1002039 Ga0265354_10020391 476
134 3300028379 Ga0268266_10023537 Ga0268266_100235373 476
135 3300030878 Ga0265770_1000821 Ga0265770_10008213 476
136 3300031090 Ga0265760_10015215 Ga0265760_100152151 476
137 3300031727 Ga0316576_10034628 Ga0316576_100346284 476
138 3300031727 Ga0316576_10148432 Ga0316576_101484321 476
139 3300031730 Ga0307516_10000067 Ga0307516_1000006768 476
140 3300035398 Ga0316574_0001748 Ga0316574_0001748_2626_4179 476
141 3300037471 Ga0395905_0086977 Ga0395905_0086977_73_1626 476
142 3300042876 Ga0451577_0021124 Ga0451577_0021124_3204_4754 476
143 3300046616 Ga0495668_0005486 Ga0495668_0005486_112_1656 476
144 3300048905 Ga0496102_0067387 Ga0496102_0067387_631_2184 476
145 3300048918 Ga0496115_0002726 Ga0496115_0002726_4718_6235 476
146 3300048920 Ga0496117_0000067 Ga0496117_0000067_123640_125193 476
147 3300048921 Ga0496118_0000021 Ga0496118_0000021_206560_208113 476
148 3300048924 Ga0496121_0035461 Ga0496121_0035461_1123_2676 476
149 3300048927 Ga0496124_0024425 Ga0496124_0024425_3180_4733 476
150 3300048929 Ga0496126_0004559 Ga0496126_0004559_2547_4100 476
151 3300049568 Ga0501031_0004153 Ga0501031_0004153_5648_7192 476
152 3300049571 Ga0501034_0163676 Ga0501034_0163676_444_1958 476
153 3300049581 Ga0501047_0001710 Ga0501047_0001710_17592_19142 476
154 3300049581 Ga0501047_0068696 Ga0501047_0068696_220_1734 476
155 3300049590 Ga0501074_0029468 Ga0501074_0029468_1711_3261 476
156 3300049742 Ga0501080_0036639 Ga0501080_0036639_466_1986 476
157 3300049822 Ga0501035_0143225 Ga0501035_0143225_439_1989 476
158 3300049822 Ga0501035_0166752 Ga0501035_0166752_377_1891 476
159 3300049823 Ga0501044_0024800 Ga0501044_0024800_3356_4870 476
160 3300053116 Ga0500592_000293 Ga0500592_000293_5285_6829 476
161 3300053139 Ga0500568_0016799 Ga0500568_0016799_1014_2531 476
162 3300053146 Ga0500588_0002152 Ga0500588_0002152_655_2208 476
163 3300053156 Ga0500622_0000944 Ga0500622_0000944_6843_8360 476
164 3300060353 Ga0501082_0004159 Ga0501082_0004159_8025_9578 476
165 iso_pu_bacteria 2739367756 2739790223 476
166 iso_pu_bacteria 2919138771 2919141234 476

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07690

MFS_1

Major Facilitator Superfamily

37

431

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
7d5p-assembly1.cif.gz_A structure of norc transporter in an outward-open conformation in complex with a single-chain indian camelid antibody 0.8485 3 464
7d5p-assembly2.cif.gz_B structure of norc transporter in an outward-open conformation in complex with a single-chain indian camelid antibody 0.8464 4 464
7y58-assembly1.cif.gz_A cryoem structure of qaca (d411n), an antibacterial efflux transporter from staphylococcus aureus 0.8444 5 464
7d5q-assembly2.cif.gz_B structure of norc transporter (k398a mutant) in an outward-open conformation in complex with a single-chain indian camelid antibody 0.8441 4 462
7d5p-assembly1.cif.gz_A structure of norc transporter in an outward-open conformation in complex with a single-chain indian camelid antibody 0.8427 3 464
ID Description Score Start End Superfamily
af_P0AEJ0_15_220_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9643 5 208 1.20.1250.20
af_P0AEJ0_15_220_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9507 5 208 1.20.1250.20
af_P9WG87_21_208_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9407 7 193 1.20.1250.20
af_P9WJX3_18_194_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9381 4 174 1.20.1250.20
af_Q2FVL1_1_184_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9353 24 206 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A537NMT5-F1-model_v4 MFS transporter 0.9608 4 154 GO:0005886
GO:0022857
AF-A0A3S1U0X0-F1-model_v4 MFS transporter 0.9512 10 147 GO:0005886
GO:0022857
AF-A0A7H4MK84-F1-model_v4 Drug resistance MFS transporter drug:H+ antiporter-1 (DHA2) family 0.9503 3 133 GO:0005886
GO:0022857
AF-A0A2K2TJ46-F1-model_v4 MFS transporter 0.9464 2 139 GO:0005886
GO:0022857
AF-A0A6B2T9L3-F1-model_v4 MFS transporter 0.9391 3 181 GO:0016020
GO:0022857
GO:0046677

Feature Viewer

pLDDT pTM Quality
84.74 0.82 High
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Predicted Structure (AlphaFold2)

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