F249780

General Info

Members Datasets Scaffolds Average Seq Length
167 110 167 490

Family's Representative Sequence

Representative Sequence 3300005334|Ga0068869_100054273|Ga0068869_1000542731
Length 527
Sequence MSLVVAFFACINYIKCMPNPKLKAADRDFFEALADVVFGNPFSPQRDELIVRLAPGAKAGDLTDDREALARVVGPRLAPWLRAGLPAMQGLSAEDRRLLEPAVLYVCYHRYVPQLDALIERQATQGGNSLTVPFADEAIAQLVGGGMPEERAVRFFAFYFQLRRAFYFINLGLAGECASMQTLREALWNNIFTHDMRGYEAALWNRMEDFSTLVLGETGTGKGSAAAAIGRSGFIPYVPAQRRFAANFTETFIAINLSQFPEALIESELFGHRKGSFTGAIDNHEGVFSRCSEHGALFLDEIGEVSIPVQIKLLQVLQERTFTPLGGHEKKRFAGRVIAATNQSLGKMRSEGRFRDDFFYRLCSDVIEVPTLRQRILESPGELGNLVRLLLARITGSPAPPIVVAVLEALGKHLPQDYPWPGNVRELEQALRRILLTGRYTAQTVAVQGQEETLLELLRSGEMTAAELLARYSAMLYRRFGTYAEVAKRTGLDPRTSRKYVESDEAGAPDFAGYRAPPKGRGTRGEG

Samples

Sample ID Description Type Environment
1 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
2 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
9 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
10 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
11 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
12 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
13 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
14 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
15 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
16 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
17 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
18 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
19 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
20 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
21 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
22 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
23 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
24 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
25 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
26 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
30 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
31 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
32 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
33 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300027364 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes) (version 2) Metagenome Rhizosphere
47 3300027462 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes) (version 2) Metagenome Rhizosphere
48 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
49 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
50 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
52 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
53 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
54 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
55 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
56 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
57 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
58 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
59 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
60 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
61 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
62 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
63 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
64 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
65 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
66 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
67 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
68 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
69 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
70 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
71 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
72 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
73 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
74 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
75 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
76 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
77 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
78 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
79 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
80 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
91 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
92 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
93 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
94 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
95 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
96 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
97 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
98 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
99 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
100 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
101 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
102 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
103 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
104 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
105 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
106 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
107 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
108 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
109 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
110 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.6
Nodule 0
Rhizoplane 0
Rhizosphere 91.62
Stem 0
Stem Tuber 0
Unclassified 7.78

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068869_100054273 3300005334 Bacteria 2916
2 Ga0070680_100027168 3300005336 Bacteria 4583
3 Ga0070689_100024871 3300005340 Bacteria 4495
4 Ga0070689_100054452 3300005340 Bacteria 3097
5 Ga0070692_10005724 3300005345 Bacteria 5336
6 Ga0070692_10010915 3300005345 Bacteria 4156
7 Ga0070668_100036253 3300005347 Bacteria 3764
8 Ga0070669_100003570 3300005353 Bacteria 11227
9 Ga0070675_100126137 3300005354 Bacteria 2178
10 Ga0070701_10006458 3300005438 Bacteria 4938
11 Ga0070701_10031597 3300005438 Bacteria 2628
12 Ga0070700_100007961 3300005441 Bacteria 5753
13 Ga0070700_100131142 3300005441 Bacteria 1692
14 Ga0070694_100015377 3300005444 Bacteria 4806
15 Ga0068867_100008305 3300005459 Bacteria 7330
16 Ga0068867_100017878 3300005459 Bacteria 5036
17 Ga0070699_100106937 3300005518 Bacteria 2454
18 Ga0070696_100049132 3300005546 Bacteria 2929
19 Ga0070693_100006755 3300005547 Bacteria 5572
20 Ga0068859_100039627 3300005617 Bacteria 4727
21 Ga0068859_100232210 3300005617 Bacteria 1933
22 Ga0068861_100006578 3300005719 Bacteria 7930
23 Ga0068861_100114223 3300005719 Bacteria 2168
24 Ga0068863_100019168 3300005841 Bacteria 6549
25 Ga0068862_100007791 3300005844 Bacteria 8855
26 Ga0097621_100089435 3300006237 Bacteria 2575
27 Ga0068871_100000588 3300006358 Bacteria 24949
28 Ga0068871_100010657 3300006358 Bacteria 6720
29 Ga0075428_100054395 3300006844 Bacteria 4387
30 Ga0075430_100003930 3300006846 Bacteria 12537
31 Ga0075430_100048702 3300006846 Bacteria 3578
32 Ga0075431_100005604 3300006847 Bacteria 12400
33 Ga0068865_100006502 3300006881 Bacteria 7135
34 Ga0068865_100080389 3300006881 Bacteria 2338
35 Ga0075436_100000529 3300006914 Bacteria 24848
36 Ga0075436_100001110 3300006914 Bacteria 18201
37 Ga0097620_100039627 3300006931 Bacteria 4727
38 Ga0097620_100232209 3300006931 Bacteria 1933
39 Ga0105240_10000056 3300009093 Bacteria 224822
40 Ga0105240_10178052 3300009093 Bacteria 2512
41 Ga0111539_10013430 3300009094 Bacteria 10237
42 Ga0111539_10050079 3300009094 Bacteria 4977
43 Ga0111539_10084991 3300009094 Bacteria 3720
44 Ga0111539_10123879 3300009094 Bacteria 3029
45 Ga0105243_10008126 3300009148 Bacteria 8056
46 Ga0105242_10011401 3300009176 Bacteria 6832
47 Ga0105248_10308774 3300009177 Bacteria 1781
48 Ga0163163_10000050 3300014325 Bacteria 128713
49 Ga0207645_10060481 3300025907 Bacteria 2419
50 Ga0207695_10000103 3300025913 Bacteria 257354
51 Ga0207681_10003812 3300025923 Bacteria 9353
52 Ga0207659_10074944 3300025926 Bacteria 2481
53 Ga0207709_10002601 3300025935 Bacteria 11247
54 Ga0207670_10008896 3300025936 Bacteria 5693
55 Ga0207670_10021973 3300025936 Bacteria 3945
56 Ga0207704_10013285 3300025938 Bacteria 4116
57 Ga0207711_10202465 3300025941 Bacteria 1812
58 Ga0207689_10024886 3300025942 Bacteria 5019
59 Ga0207668_10027054 3300025972 Bacteria 3733
60 Ga0207641_10033261 3300026088 Bacteria 4284
61 Ga0207648_10002440 3300026089 Bacteria 19991
62 Ga0207648_10007618 3300026089 Bacteria 10614
63 Ga0207675_100000812 3300026118 Bacteria 31052
64 Ga0209967_1001649 3300027364 Bacteria 2876
65 Ga0210000_1000669 3300027462 Bacteria 4730
66 Ga0210000_1004475 3300027462 Bacteria 2017
67 Ga0209999_1001152 3300027543 Bacteria 4523
68 Ga0207428_10154044 3300027907 Bacteria 1748
69 Ga0268265_10003633 3300028380 Bacteria 11005
70 Ga0265327_10005109 3300031251 Bacteria 11158
71 Ga0307509_10127663 3300031507 Bacteria 2506
72 Ga0316576_10022212 3300031727 Bacteria 4404
73 Ga0316583_10017043 3300032133 Bacteria 2613
74 Ga0316583_10032981 3300032133 Bacteria 1840
75 Ga0373928_0004334 3300035084 Bacteria 2705
76 Ga0316574_0015327 3300035398 Bacteria 4446
77 Ga0316584_0053165 3300036712 Unclassified 3030
78 Ga0316584_0068526 3300036712 Bacteria 2659
79 Ga0373925_0051051 3300037068 Bacteria 3086
80 Ga0395905_0081883 3300037471 Bacteria 3025
81 Ga0400484_00337 3300038725 Bacteria 4098
82 Ga0400484_07753 3300038725 Bacteria 3676
83 Ga0400484_25077 3300038725 Bacteria 9129
84 Ga0400490_05143 3300038726 Bacteria 3361
85 Ga0400485_04225 3300038735 Bacteria 7809
86 Ga0400488_10040 3300038741 Bacteria 5220
87 Ga0400488_47612 3300038741 Unclassified 2069
88 Ga0400488_53557 3300038741 Bacteria 7891
89 Ga0400486_30561 3300038742 Bacteria 6432
90 Ga0400483_156364 3300039062 Bacteria 4273
91 Ga0400489_72172 3300039093 Bacteria 21942
92 Ga0400487_19932 3300039110 Bacteria 12432
93 Ga0451577_0000145 3300042876 Bacteria 157254
94 Ga0451577_0000977 3300042876 Bacteria 41799
95 Ga0451577_0005357 3300042876 Bacteria 13162
96 Ga0451577_0097129 3300042876 Bacteria 2631
97 Ga0451577_0126470 3300042876 Bacteria 2290
98 Ga0453683_0000362 3300044673 Bacteria 54570
99 Ga0453683_0000367 3300044673 Bacteria 53968
100 Ga0453683_0004599 3300044673 Bacteria 9752
101 Ga0453683_0009922 3300044673 Bacteria 6336
102 Ga0453684_0000229 3300044712 Bacteria 241494
103 Ga0453684_0004330 3300044712 Bacteria 30195
104 Ga0453684_0006350 3300044712 Bacteria 22538
105 Ga0453684_0040957 3300044712 Bacteria 6276
106 Ga0453684_0104697 3300044712 Bacteria 3453
107 Ga0453684_0116912 3300044712 Unclassified 3228
108 Ga0453684_0343901 3300044712 Bacteria 1683
109 Ga0451576_0000883 3300045051 Bacteria 57014
110 Ga0451576_0006701 3300045051 Bacteria 14044
111 Ga0451576_0010922 3300045051 Bacteria 10379
112 Ga0451576_0015917 3300045051 Bacteria 8315
113 Ga0451576_0084109 3300045051 Bacteria 3310
114 Ga0495641_0008871 3300046461 Bacteria 6058
115 Ga0495582_0038294 3300046473 Bacteria 2639
116 Ga0495640_0044636 3300046533 Bacteria 3081
117 Ga0495586_0005264 3300046535 Bacteria 6920
118 Ga0495647_0017537 3300046681 Bacteria 2535
119 Ga0495658_0005049 3300046683 Bacteria 6485
120 Ga0495613_0031537 3300046689 Bacteria 3937
121 Ga0495636_0011230 3300047318 Bacteria 3544
122 Ga0501034_0094626 3300049571 Bacteria 2984
123 Ga0501037_0039433 3300049573 Bacteria 3477
124 Ga0501038_0014151 3300049574 Bacteria 7268
125 Ga0501039_0021114 3300049575 Bacteria 4995
126 Ga0501039_0118783 3300049575 Bacteria 2071
127 Ga0501040_0027164 3300049576 Bacteria 3852
128 Ga0501041_0000529 3300049577 Bacteria 19751
129 Ga0501042_0129775 3300049578 Bacteria 1816
130 Ga0501043_0132373 3300049579 Bacteria 1954
131 Ga0501046_0070291 3300049580 Bacteria 2722
132 Ga0501047_0000924 3300049581 Bacteria 30063
133 Ga0501068_0001219 3300049584 Bacteria 13643
134 Ga0501069_0027366 3300049585 Bacteria 3124
135 Ga0501072_0000006 3300049588 Bacteria 245475
136 Ga0501072_0010390 3300049588 Bacteria 7093
137 Ga0501072_0033745 3300049588 Bacteria 4011
138 Ga0501073_0025556 3300049589 Bacteria 4232
139 Ga0501074_0019841 3300049590 Bacteria 4882
140 Ga0501075_0023889 3300049591 Bacteria 4477
141 Ga0501076_0002727 3300049592 Bacteria 12216
142 Ga0501076_0045473 3300049592 Bacteria 3466
143 Ga0501076_0080728 3300049592 Bacteria 2611
144 Ga0501076_0147864 3300049592 Bacteria 1911
145 Ga0501077_0005146 3300049593 Bacteria 7944
146 Ga0501077_0092536 3300049593 Bacteria 1916
147 Ga0501079_0005770 3300049741 Bacteria 9256
148 Ga0501079_0047683 3300049741 Bacteria 3305
149 Ga0501080_0022194 3300049742 Bacteria 5879
150 Ga0501080_0073996 3300049742 Bacteria 3169
151 Ga0501080_0098766 3300049742 Bacteria 2709
152 Ga0501081_0000560 3300049743 Bacteria 21149
153 Ga0501083_0029139 3300049744 Bacteria 3800
154 Ga0501044_0029295 3300049823 Bacteria 5805
155 nmdc:mga0qj67_42684_c1 3300050509 Bacteria 3570
156 nmdc:mga0qj67_4343_c1 3300050509 Bacteria 10268
157 nmdc:mga06r32_5127_c2 3300050510 Bacteria 3135
158 nmdc:mga08y16_161519_c1 3300050511 Bacteria 2328
159 nmdc:mga08y16_22442_c1 3300050511 Bacteria 6662
160 nmdc:mga08y16_61197_c1 3300050511 Bacteria 3931
161 nmdc:mga08y16_83656_c1 3300050511 Bacteria 3326
162 nmdc:mga08y16_87972_c1 3300050511 Bacteria 3237
163 nmdc:mga08x19_258_c2 3300050514 Bacteria 11933
164 Ga0500616_0001890 3300053153 Bacteria 18852
165 Ga0501084_0000726 3300054114 Bacteria 25077
166 Ga0501082_0005297 3300060353 Bacteria 11213
167 Ga0530510_0031952 3300061734 Bacteria 3785

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300046681 Ga0495647_0017537 Ga0495647_0017537_232_1578 446
2 3300036712 Ga0316584_0053165 Ga0316584_0053165_247_1668 455
3 3300037471 Ga0395905_0081883 Ga0395905_0081883_1526_2908 459
4 3300049588 Ga0501072_0033745 Ga0501072_0033745_2241_3665 460
5 3300049592 Ga0501076_0147864 Ga0501076_0147864_292_1716 460
6 3300031251 Ga0265327_10005109 Ga0265327_100051098 461
7 3300006846 Ga0075430_100048702 Ga0075430_1000487023 462
8 3300050509 nmdc:mga0qj67_42684_c1 nmdc:mga0qj67_42684_c1_1605_3032 462
9 3300042876 Ga0451577_0000145 Ga0451577_0000145_148192_149697 465
10 3300044712 Ga0453684_0006350 Ga0453684_0006350_2306_3811 465
11 3300005353 Ga0070669_100003570 Ga0070669_1000035707 469
12 3300005459 Ga0068867_100008305 Ga0068867_1000083054 469
13 3300005719 Ga0068861_100006578 Ga0068861_1000065785 469
14 3300009148 Ga0105243_10008126 Ga0105243_100081264 469
15 3300025907 Ga0207645_10060481 Ga0207645_100604811 469
16 3300025923 Ga0207681_10003812 Ga0207681_100038124 469
17 3300025935 Ga0207709_10002601 Ga0207709_1000260114 469
18 3300026089 Ga0207648_10002440 Ga0207648_100024404 469
19 3300026118 Ga0207675_100000812 Ga0207675_10000081224 469
20 3300028380 Ga0268265_10003633 Ga0268265_100036337 469
21 3300005345 Ga0070692_10005724 Ga0070692_100057244 470
22 3300005347 Ga0070668_100036253 Ga0070668_1000362534 470
23 3300005441 Ga0070700_100007961 Ga0070700_1000079614 470
24 3300005844 Ga0068862_100007791 Ga0068862_1000077918 470
25 3300006358 Ga0068871_100000588 Ga0068871_1000005883 470
26 3300006881 Ga0068865_100006502 Ga0068865_1000065023 470
27 3300009094 Ga0111539_10013430 Ga0111539_1001343010 470
28 3300025938 Ga0207704_10013285 Ga0207704_100132854 470
29 3300025972 Ga0207668_10027054 Ga0207668_100270543 470
30 3300027907 Ga0207428_10154044 Ga0207428_101540442 470
31 3300050511 nmdc:mga08y16_83656_c1 nmdc:mga08y16_83656_c1_1540_2997 470
32 3300027462 Ga0210000_1004475 Ga0210000_10044752 471
33 3300049575 Ga0501039_0118783 Ga0501039_0118783_163_1587 472
34 3300047318 Ga0495636_0011230 Ga0495636_0011230_1672_3132 473
35 3300049742 Ga0501080_0098766 Ga0501080_0098766_635_2065 474
36 3300009093 Ga0105240_10000056 Ga0105240_1000005665 475
37 3300025913 Ga0207695_10000103 Ga0207695_1000010366 475
38 3300049576 Ga0501040_0027164 Ga0501040_0027164_636_2066 475
39 3300009093 Ga0105240_10178052 Ga0105240_101780522 476
40 3300032133 Ga0316583_10017043 Ga0316583_100170432 479
41 3300045051 Ga0451576_0015917 Ga0451576_0015917_5014_6495 479
42 3300027364 Ga0209967_1001649 Ga0209967_10016493 480
43 3300027462 Ga0210000_1000669 Ga0210000_10006692 480
44 3300027543 Ga0209999_1001152 Ga0209999_10011525 480
45 3300045051 Ga0451576_0006701 Ga0451576_0006701_960_2426 480
46 3300053153 Ga0500616_0001890 Ga0500616_0001890_9445_10902 483
47 3300005354 Ga0070675_100126137 Ga0070675_1001261371 484
48 3300005441 Ga0070700_100131142 Ga0070700_1001311421 484
49 3300009094 Ga0111539_10050079 Ga0111539_100500794 484
50 3300009094 Ga0111539_10123879 Ga0111539_101238792 484
51 3300025926 Ga0207659_10074944 Ga0207659_100749442 484
52 3300031727 Ga0316576_10022212 Ga0316576_100222122 484
53 3300049593 Ga0501077_0005146 Ga0501077_0005146_1023_2516 484
54 3300050511 nmdc:mga08y16_161519_c1 nmdc:mga08y16_161519_c1_660_2117 484
55 3300050511 nmdc:mga08y16_22442_c1 nmdc:mga08y16_22442_c1_2532_3989 484
56 3300005438 Ga0070701_10031597 Ga0070701_100315972 485
57 3300035084 Ga0373928_0004334 Ga0373928_0004334_416_1879 485
58 3300049742 Ga0501080_0073996 Ga0501080_0073996_1135_2622 485
59 3300005336 Ga0070680_100027168 Ga0070680_1000271685 486
60 3300005345 Ga0070692_10010915 Ga0070692_100109153 486
61 3300005444 Ga0070694_100015377 Ga0070694_1000153772 486
62 3300005546 Ga0070696_100049132 Ga0070696_1000491323 486
63 3300005841 Ga0068863_100019168 Ga0068863_1000191683 486
64 3300006844 Ga0075428_100054395 Ga0075428_1000543952 486
65 3300006847 Ga0075431_100005604 Ga0075431_1000056047 486
66 3300026088 Ga0207641_10033261 Ga0207641_100332612 486
67 3300050510 nmdc:mga06r32_5127_c2 nmdc:mga06r32_5127_c2_1567_3048 486
68 3300025936 Ga0207670_10021973 Ga0207670_100219732 487
69 3300005340 Ga0070689_100024871 Ga0070689_1000248713 488
70 3300005518 Ga0070699_100106937 Ga0070699_1001069374 488
71 3300005617 Ga0068859_100232210 Ga0068859_1002322101 488
72 3300006237 Ga0097621_100089435 Ga0097621_1000894352 488
73 3300006931 Ga0097620_100232209 Ga0097620_1002322093 488
74 3300025936 Ga0207670_10008896 Ga0207670_100088965 488
75 3300044673 Ga0453683_0000362 Ga0453683_0000362_41022_42497 488
76 3300005340 Ga0070689_100054452 Ga0070689_1000544522 489
77 3300005438 Ga0070701_10006458 Ga0070701_100064583 490
78 3300005547 Ga0070693_100006755 Ga0070693_1000067556 490
79 3300005617 Ga0068859_100039627 Ga0068859_1000396272 490
80 3300006358 Ga0068871_100010657 Ga0068871_1000106577 490
81 3300006914 Ga0075436_100000529 Ga0075436_10000052932 490
82 3300006931 Ga0097620_100039627 Ga0097620_1000396272 490
83 3300009177 Ga0105248_10308774 Ga0105248_103087741 490
84 3300037068 Ga0373925_0051051 Ga0373925_0051051_372_1850 490
85 3300042876 Ga0451577_0126470 Ga0451577_0126470_206_1684 490
86 3300044712 Ga0453684_0004330 Ga0453684_0004330_7660_9141 490
87 3300050514 nmdc:mga08x19_258_c2 nmdc:mga08x19_258_c2_1176_2654 490
88 3300014325 Ga0163163_10000050 Ga0163163_1000005037 491
89 3300049571 Ga0501034_0094626 Ga0501034_0094626_1223_2701 491
90 3300049573 Ga0501037_0039433 Ga0501037_0039433_21_1499 491
91 3300049575 Ga0501039_0021114 Ga0501039_0021114_704_2182 491
92 3300049577 Ga0501041_0000529 Ga0501041_0000529_14540_16018 491
93 3300049578 Ga0501042_0129775 Ga0501042_0129775_177_1655 491
94 3300049579 Ga0501043_0132373 Ga0501043_0132373_388_1866 491
95 3300049580 Ga0501046_0070291 Ga0501046_0070291_580_2058 491
96 3300049588 Ga0501072_0010390 Ga0501072_0010390_957_2435 491
97 3300049591 Ga0501075_0023889 Ga0501075_0023889_2162_3640 491
98 3300049592 Ga0501076_0002727 Ga0501076_0002727_2450_3928 491
99 3300049593 Ga0501077_0092536 Ga0501077_0092536_383_1861 491
100 3300049741 Ga0501079_0005770 Ga0501079_0005770_2253_3731 491
101 3300049743 Ga0501081_0000560 Ga0501081_0000560_9948_11426 491
102 3300060353 Ga0501082_0005297 Ga0501082_0005297_2933_4411 491
103 3300032133 Ga0316583_10032981 Ga0316583_100329811 492
104 3300038741 Ga0400488_10040 Ga0400488_10040_420_1901 492
105 3300038741 Ga0400488_47612 Ga0400488_47612_96_1589 492
106 3300044673 Ga0453683_0009922 Ga0453683_0009922_1149_2633 492
107 3300044712 Ga0453684_0116912 Ga0453684_0116912_1556_3040 492
108 3300038735 Ga0400485_04225 Ga0400485_04225_4295_5779 493
109 3300038742 Ga0400486_30561 Ga0400486_30561_4670_6154 493
110 3300042876 Ga0451577_0097129 Ga0451577_0097129_1083_2573 493
111 3300044712 Ga0453684_0040957 Ga0453684_0040957_485_1972 493
112 3300044712 Ga0453684_0104697 Ga0453684_0104697_1319_2806 493
113 3300050511 nmdc:mga08y16_61197_c1 nmdc:mga08y16_61197_c1_1766_3256 493
114 3300050511 nmdc:mga08y16_87972_c1 nmdc:mga08y16_87972_c1_1014_2540 493
115 3300006914 Ga0075436_100001110 Ga0075436_10000111022 494
116 3300036712 Ga0316584_0068526 Ga0316584_0068526_998_2500 494
117 3300042876 Ga0451577_0000977 Ga0451577_0000977_24534_26021 494
118 3300044673 Ga0453683_0000367 Ga0453683_0000367_23682_25178 494
119 3300044712 Ga0453684_0000229 Ga0453684_0000229_149208_150695 494
120 3300045051 Ga0451576_0000883 Ga0451576_0000883_24638_26125 494
121 3300045051 Ga0451576_0084109 Ga0451576_0084109_1402_2895 494
122 3300025941 Ga0207711_10202465 Ga0207711_102024652 495
123 3300035398 Ga0316574_0015327 Ga0316574_0015327_876_2375 495
124 3300038725 Ga0400484_07753 Ga0400484_07753_308_1798 495
125 3300044673 Ga0453683_0004599 Ga0453683_0004599_3448_4947 495
126 3300046461 Ga0495641_0008871 Ga0495641_0008871_954_2450 496
127 3300046473 Ga0495582_0038294 Ga0495582_0038294_460_1956 496
128 3300046533 Ga0495640_0044636 Ga0495640_0044636_757_2253 496
129 3300046535 Ga0495586_0005264 Ga0495586_0005264_2838_4334 496
130 3300046683 Ga0495658_0005049 Ga0495658_0005049_1365_2861 496
131 3300046689 Ga0495613_0031537 Ga0495613_0031537_977_2473 496
132 3300049574 Ga0501038_0014151 Ga0501038_0014151_4406_5899 497
133 3300049581 Ga0501047_0000924 Ga0501047_0000924_23930_25423 497
134 3300049584 Ga0501068_0001219 Ga0501068_0001219_11615_13108 497
135 3300049585 Ga0501069_0027366 Ga0501069_0027366_101_1594 497
136 3300049588 Ga0501072_0000006 Ga0501072_0000006_119766_121259 497
137 3300049589 Ga0501073_0025556 Ga0501073_0025556_1984_3477 497
138 3300049590 Ga0501074_0019841 Ga0501074_0019841_2854_4347 497
139 3300049592 Ga0501076_0045473 Ga0501076_0045473_1884_3377 497
140 3300049592 Ga0501076_0080728 Ga0501076_0080728_353_1906 497
141 3300049741 Ga0501079_0047683 Ga0501079_0047683_638_2131 497
142 3300049742 Ga0501080_0022194 Ga0501080_0022194_3834_5327 497
143 3300049744 Ga0501083_0029139 Ga0501083_0029139_1196_2689 497
144 3300049823 Ga0501044_0029295 Ga0501044_0029295_1659_3152 497
145 3300054114 Ga0501084_0000726 Ga0501084_0000726_5830_7323 497
146 3300061734 Ga0530510_0031952 Ga0530510_0031952_205_1758 497
147 3300006846 Ga0075430_100003930 Ga0075430_1000039302 498
148 3300009094 Ga0111539_10084991 Ga0111539_100849912 498
149 3300039110 Ga0400487_19932 Ga0400487_19932_6417_7916 498
150 3300042876 Ga0451577_0005357 Ga0451577_0005357_4010_5515 498
151 3300044712 Ga0453684_0343901 Ga0453684_0343901_124_1629 498
152 3300050509 nmdc:mga0qj67_4343_c1 nmdc:mga0qj67_4343_c1_7334_8833 498
153 3300038726 Ga0400490_05143 Ga0400490_05143_1314_2816 499
154 3300038741 Ga0400488_53557 Ga0400488_53557_4749_6251 499
155 3300039062 Ga0400483_156364 Ga0400483_156364_431_1951 501
156 3300039093 Ga0400489_72172 Ga0400489_72172_12085_13605 501
157 3300031507 Ga0307509_10127663 Ga0307509_101276633 502
158 3300038725 Ga0400484_00337 Ga0400484_00337_987_2519 504
159 3300038725 Ga0400484_25077 Ga0400484_25077_7022_8605 504
160 3300045051 Ga0451576_0010922 Ga0451576_0010922_6096_7697 506
161 3300009176 Ga0105242_10011401 Ga0105242_100114012 511
162 3300005334 Ga0068869_100054273 Ga0068869_1000542731 527
163 3300005459 Ga0068867_100017878 Ga0068867_1000178782 527
164 3300005719 Ga0068861_100114223 Ga0068861_1001142231 527
165 3300006881 Ga0068865_100080389 Ga0068865_1000803892 527
166 3300025942 Ga0207689_10024886 Ga0207689_100248864 527
167 3300026089 Ga0207648_10007618 Ga0207648_100076187 527

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00158

Sigma54_activat

Sigma-54 interaction domain

196

368

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
4bs1-assembly1.cif.gz_B-1 mub is an aaaplus atpase that forms helical filaments to control target selection for dna transposition 0.8738 173 370
4bs1-assembly1.cif.gz_B-1 mub is an aaaplus atpase that forms helical filaments to control target selection for dna transposition 0.8548 173 370
6jdl-assembly1.cif.gz_A central domain of fleq h287a mutant in complex with atpgs and mg 0.853 173 436
6jdi-assembly1.cif.gz_A central domain of fleq h287n mutant in complex with atpgs and mg 0.8481 173 436
1ny6-assembly1.cif.gz_B crystal structure of sigm54 activator (aaa+ atpase) in the active state 0.8411 209 441
ID Description Score Start End Superfamily
5m7nA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9106 173 369 3.40.50.300
2c98A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9089 173 372 3.40.50.300
2c98A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9037 173 372 3.40.50.300
5m7nA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8945 173 369 3.40.50.300
1ojlB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8903 173 372 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A212DLT4-F1-model_v4 deleted 0.9504 249 375
AF-A0A2V5QV29-F1-model_v4 Sigma-54 factor interaction domain-containing protein 0.9485 251 357 GO:0005524
GO:0006355
AF-A0A7X5N2N2-F1-model_v4 Sigma-54 factor interaction domain-containing protein 0.9391 252 362 GO:0005524
GO:0006355
AF-A0A7C3Q3W9-F1-model_v4 PAS domain S-box protein 0.9352 172 394 GO:0005524
GO:0006355
GO:0016887
AF-A0A3D6C6A6-F1-model_v4 Fis family transcriptional regulator 0.929 252 360 GO:0005524
GO:0006355

Feature Viewer

pLDDT pTM Quality
85.33 0.77 High
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Predicted Structure (AlphaFold2)

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