F249882

General Info

Members Datasets Scaffolds Average Seq Length
167 120 334 1202

Family's Representative Sequence

Representative Sequence 3300005355|Ga0070671_100000001|Ga0070671_100000001521
Length 1243
Sequence MSDVTSASLTPSDYVHLHNHTQYSLLDGLTKVPALCNWVKSVGMEAVAQTDHGTLSGAIEFYKEAKNAGIKPIIGMEGYVAARTIYDKEPGKDKVYYHLIILAMNETGYKNLMKLSTIANLEGVYYKPRVDHDLLEKYNEGLIILSGCIGGEVGDAIRQEQYDKAKEVAAWYKSVFGDRYYIEVQDHGHPEHPSKWDEQVKVNAGLLKLADELDIKPVVTGDAHYLSHDDQTAHEILLCVQTGSFLSDEKRMSLADFELHVADPNEIIARWQDFRPDAVRNTKEIADRCSVEFELGGILIPKFPVPEGETEKTFLDRLVFKGLAENYLHLTPDDALKLSIDEVKQKLDKETLERTEYELKVIDGMGFNGYMLIVQDFINWGKDQGIIFGPGRGSAAGSIIAYALHITDLDPLKYGLLFERFLNPDRISMPDIDVDIQDNRRDEVIQYCADKYGHDRVSNIVTFGKMAARAAVRDVARVLQVPYAEADRIAKLVPQPVQGRHIPLEKSIVNDMDLKREYVENETAKRVIDLAITLEGTIRNHGVHACGVVIAPSDLVGYVPLEMAQKGVVATQFPMTQIEELGLLKMDFLGLSNLTIMKNALRIIKRVHNIDVLLKDIPLDDEATFKLLGRGDTTGVFQFESSGMKRYLRELKPTEFNDVIAMGALYRPGPLSAGLTDAFIKRKNGLESIVYAHELMRNALQDTYGVLVYQEQVMAISREVCGFTGGEADTLRKAIGKKKHDVMAKMQVKFIDGAVANGVPKAVIEKFWKDLLGFADYCFNKSHSACYGLTSYHTAYLKAHYPAEFMAALMTSDYDDTDRLSIEITECKKMGMSVMPPDVNESFLEFAVVPDSKQIRFGMNAIKNVGTGAVEEIIRARDEQPFKDLEDFFQRVNTRIVNRKALESLIKSGAFDRFGQRSVLLHNLDTLMAFAQRVQKDKVSGQTDLFGNILNEDAGASIRSSLKLDESAPKIDQHEQLKWERDLLGLYLSQHPLELYETFLEEQAVPLDTIKPMHDGKPVTIGGAVSDVREITTKNGQKMAFIKIEDAKSEIEAILFPSAYQKTLGLWERDRVVLIQGKVSAKDREGNIGDEVKIMVDDAREISAEQASLYQSTGRKPRALPTTVRGAVAKALSARANAANNVASASVADKTATTSVPIIDAASPPRNEPMQRVYIRLPNAKDQEVLMSLKQVIDDHLGQTDVVLVLGDEAARQIIKLPTGVSHDEHVMGKLKTLAGADNVKVA

Samples

Sample ID Description Type Environment
1 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
2 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
3 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
4 3300002244 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1 Metagenome Rhizosphere
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
12 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
13 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
14 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
15 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
25 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
26 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
27 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
28 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
29 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
30 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
31 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
32 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
33 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
40 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
41 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
42 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
43 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
44 3300009987 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_213 metaG Metagenome Rhizosphere
45 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
48 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
49 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
50 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
51 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
71 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
73 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
74 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
75 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
76 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
77 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
78 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
79 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
80 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
81 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
82 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
83 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
84 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
85 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
86 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
87 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
88 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
89 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
92 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
93 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
94 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
95 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
96 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
97 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
98 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
99 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
100 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
101 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
102 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
103 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
104 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
105 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
106 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
107 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
108 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
109 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
110 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
111 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
112 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
113 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
114 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
115 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
116 3300053143 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 endosphere Metagenome Endosphere
117 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
118 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
119 3300053722 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 endosphere Metagenome Endosphere
120 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.4
Metatranscriptomes 0
Isolates 0.6

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 27.54
Nodule 0
Rhizoplane 0.6
Rhizosphere 70.06
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070671_100000001 3300005355 Bacteria 1228151
2 JGI24741J21665_1001140 3300001915 Bacteria 7855
3 JGI24735J21928_10000227 3300002067 Bacteria 19785
4 JGI24742J22300_10000011 3300002244 Bacteria 31137
5 rootH2_10000244 3300003320 Bacteria 697651
6 Ga0070658_10000012 3300005327 Bacteria 277871
7 Ga0070658_10000491 3300005327 Bacteria 34335
8 Ga0070658_10009026 3300005327 Bacteria 8020
9 Ga0070676_10001822 3300005328 Bacteria 10833
10 Ga0070683_100000657 3300005329 Bacteria 25014
11 Ga0070683_100003448 3300005329 Bacteria 12841
12 Ga0070666_10022729 3300005335 Bacteria 4076
13 Ga0070680_100011167 3300005336 Bacteria 6948
14 Ga0070660_100000835 3300005339 Bacteria 20500
15 Ga0070659_100000558 3300005366 Bacteria 27295
16 Ga0070667_100000001 3300005367 Bacteria 1108638
17 Ga0070678_100000234 3300005456 Bacteria 25286
18 Ga0070685_10007581 3300005466 Bacteria 5551
19 Ga0070679_100000652 3300005530 Bacteria 29531
20 Ga0070679_100004498 3300005530 Bacteria 12880
21 Ga0070679_100006231 3300005530 Bacteria 11110
22 Ga0070684_100003985 3300005535 Bacteria 11185
23 Ga0068855_100000003 3300005563 Bacteria 589862
24 Ga0068855_100000211 3300005563 Bacteria 74558
25 Ga0068857_100000002 3300005577 Bacteria 241401
26 Ga0068857_100008772 3300005577 Bacteria 8758
27 Ga0068856_100000001 3300005614 Bacteria 565602
28 Ga0068856_100010009 3300005614 Bacteria 9209
29 Ga0068864_100021684 3300005618 Bacteria 5380
30 Ga0068863_100014649 3300005841 Bacteria 7548
31 Ga0068860_100005217 3300005843 Bacteria 13193
32 Ga0081455_10000003 3300005937 Bacteria 367763
33 Ga0081539_10001746 3300005985 Bacteria 34691
34 Ga0075365_10000220 3300006038 Bacteria 19254
35 Ga0075365_10000231 3300006038 Bacteria 19070
36 Ga0075368_10000191 3300006042 Bacteria 16758
37 Ga0075363_100000809 3300006048 Bacteria 10824
38 Ga0075364_10001059 3300006051 Bacteria 14650
39 Ga0075364_10001104 3300006051 Bacteria 14430
40 Ga0075367_10001863 3300006178 Bacteria 9314
41 Ga0075369_10000005 3300006186 Bacteria 147699
42 Ga0075369_10000056 3300006186 Bacteria 28912
43 Ga0075366_10000044 3300006195 Bacteria 45021
44 Ga0075366_10000729 3300006195 Bacteria 15645
45 Ga0097621_100000370 3300006237 Bacteria 31223
46 Ga0075370_10008161 3300006353 Bacteria 5373
47 Ga0068871_100000156 3300006358 Bacteria 45103
48 Ga0105240_10000003 3300009093 Bacteria 1183681
49 Ga0105240_10000050 3300009093 Bacteria 236144
50 Ga0105245_10000002 3300009098 Bacteria 634374
51 Ga0105245_10001369 3300009098 Bacteria 22074
52 Ga0105243_10000001 3300009148 Bacteria 1156578
53 Ga0105243_10007006 3300009148 Bacteria 8681
54 Ga0105241_10000003 3300009174 Bacteria 839043
55 Ga0105242_10003011 3300009176 Bacteria 13169
56 Ga0105237_10001775 3300009545 Bacteria 27883
57 Ga0105238_10004439 3300009551 Bacteria 13909
58 Ga0105249_10000802 3300009553 Bacteria 28271
59 Ga0105030_100219 3300009987 Bacteria 4965
60 Ga0157371_10000937 3300013102 Bacteria 32624
61 Ga0157371_10012136 3300013102 Bacteria 6600
62 Ga0157369_10056713 3300013105 Bacteria 4227
63 Ga0157374_10000031 3300013296 Bacteria 204840
64 Ga0157374_10002560 3300013296 Bacteria 15342
65 Ga0157372_10003432 3300013307 Bacteria 17099
66 Ga0157372_10013854 3300013307 Bacteria 8610
67 Ga0163163_10002375 3300014325 Bacteria 15932
68 Ga0157376_10000001 3300014969 Bacteria 842910
69 Ga0207645_10001792 3300025907 Bacteria 17339
70 Ga0207705_10000056 3300025909 Bacteria 157554
71 Ga0207705_10001105 3300025909 Bacteria 21924
72 Ga0207705_10004280 3300025909 Bacteria 10810
73 Ga0207654_10000002 3300025911 Bacteria 1460142
74 Ga0207707_10005833 3300025912 Bacteria 10761
75 Ga0207695_10000005 3300025913 Bacteria 1196715
76 Ga0207695_10000158 3300025913 Bacteria 201891
77 Ga0207695_10015221 3300025913 Bacteria 9070
78 Ga0207671_10000014 3300025914 Bacteria 461481
79 Ga0207657_10014671 3300025919 Bacteria 7635
80 Ga0207652_10001980 3300025921 Bacteria 17726
81 Ga0207652_10026084 3300025921 Bacteria 4864
82 Ga0207687_10000001 3300025927 Bacteria 1130810
83 Ga0207687_10011196 3300025927 Bacteria 5857
84 Ga0207644_10000001 3300025931 Bacteria 1243214
85 Ga0207686_10000001 3300025934 Bacteria 1169580
86 Ga0207686_10002274 3300025934 Bacteria 10546
87 Ga0207709_10000002 3300025935 Bacteria 1171536
88 Ga0207661_10000021 3300025944 Bacteria 205381
89 Ga0207667_10000008 3300025949 Bacteria 625138
90 Ga0207667_10000466 3300025949 Bacteria 54272
91 Ga0207651_10000191 3300025960 Bacteria 26637
92 Ga0207658_10000003 3300025986 Bacteria 1151934
93 Ga0207702_10000001 3300026078 Bacteria 895738
94 Ga0207702_10016312 3300026078 Bacteria 6148
95 Ga0207641_10025278 3300026088 Bacteria 4897
96 Ga0207674_10000001 3300026116 Bacteria 616581
97 Ga0207674_10014079 3300026116 Bacteria 8836
98 Ga0209813_10000004 3300027866 Bacteria 139340
99 Ga0268264_10009212 3300028381 Bacteria 8179
100 Ga0265338_10000066 3300028800 Bacteria 188576
101 Ga0265338_10000192 3300028800 Bacteria 115195
102 Ga0265338_10000601 3300028800 Bacteria 63282
103 Ga0265338_10006957 3300028800 Bacteria 14220
104 Ga0265338_10008481 3300028800 Bacteria 12467
105 Ga0265338_10022753 3300028800 Bacteria 6472
106 Ga0265324_10002604 3300029957 Bacteria 9058
107 Ga0265340_10000077 3300031247 Bacteria 47065
108 Ga0265327_10000017 3300031251 Bacteria 445264
109 Ga0307509_10034951 3300031507 Bacteria 5520
110 Ga0307516_10000078 3300031730 Bacteria 106523
111 Ga0373959_0000004 3300034820 Bacteria 100872
112 Ga0395899_0004533 3300037312 Bacteria 10825
113 Ga0395899_0005886 3300037312 Bacteria 9515
114 Ga0395900_0000232 3300037418 Bacteria 87268
115 Ga0395900_0004371 3300037418 Bacteria 14994
116 Ga0395900_0011364 3300037418 Bacteria 9108
117 Ga0395898_0015019 3300037466 Bacteria 7949
118 Ga0395898_0016139 3300037466 Bacteria 7648
119 Ga0395905_0000238 3300037471 Bacteria 83164
120 Ga0395905_0004532 3300037471 Bacteria 14388
121 Ga0395901_0000680 3300038443 Bacteria 39129
122 Ga0395901_0006077 3300038443 Bacteria 12237
123 Ga0395901_0014293 3300038443 Bacteria 8080
124 Ga0495622_0000082 3300046557 Bacteria 85266
125 Ga0495588_0000116 3300046674 Bacteria 135919
126 Ga0495649_0000284 3300046694 Bacteria 44736
127 Ga0495672_0000129 3300047320 Bacteria 112879
128 Ga0496113_0021525 3300048916 Bacteria 4550
129 Ga0501034_0001444 3300049571 Bacteria 31518
130 Ga0501034_0002719 3300049571 Bacteria 20818
131 Ga0501047_0000229 3300049581 Bacteria 66412
132 Ga0501083_0005479 3300049744 Bacteria 8989
133 Ga0501035_0000033 3300049822 Bacteria 175087
134 nmdc:mga03683_20_c2 3300050489 Bacteria 23288
135 nmdc:mga03n38_389_c1 3300050490 Bacteria 10852
136 nmdc:mga00v17_515_c1 3300050491 Bacteria 21654
137 nmdc:mga00v17_76_c2 3300050491 Bacteria 52505
138 nmdc:mga0yw44_212_c1 3300050492 Bacteria 20607
139 nmdc:mga0yw44_2_c1 3300050492 Bacteria 586884
140 nmdc:mga0yw44_559_c1 3300050492 Bacteria 13438
141 nmdc:mga0k408_17_c2 3300050493 Bacteria 97852
142 nmdc:mga06z11_6_c1 3300050494 Bacteria 124054
143 nmdc:mga04h51_4_c1 3300050495 Bacteria 139342
144 nmdc:mga0sz30_1_c1 3300050516 Bacteria 796501
145 Ga0500610_0000001 3300053079 Bacteria 185468
146 Ga0500643_000010 3300053087 Bacteria 408084
147 Ga0500644_0000006 3300053088 Bacteria 143304
148 Ga0500644_0003715 3300053088 Bacteria 3790
149 Ga0500646_0000316 3300053090 Bacteria 14807
150 Ga0500651_0000027 3300053093 Bacteria 116666
151 Ga0500651_0000045 3300053093 Bacteria 85481
152 Ga0500566_0000001 3300053094 Bacteria 1101031
153 Ga0500650_0000001 3300053098 Bacteria 818797
154 Ga0500555_000001 3300053103 Bacteria 1353713
155 Ga0500555_000002 3300053103 Bacteria 1314346
156 Ga0500556_0000295 3300053104 Bacteria 38375
157 Ga0500562_000002 3300053108 Bacteria 977234
158 Ga0500594_0000001 3300053118 Bacteria 1178472
159 Ga0500614_000001 3300053123 Bacteria 1274484
160 Ga0500652_000020 3300053131 Bacteria 119198
161 Ga0500561_0000001 3300053137 Bacteria 957685
162 Ga0500577_0000107 3300053142 Bacteria 20205
163 Ga0500579_003193 3300053143 Bacteria 9810
164 Ga0500589_000016 3300053147 Bacteria 107090
165 Ga0500616_0000005 3300053153 Bacteria 961725
166 Ga0500649_000013 3300053722 Bacteria 73694
167 2816425271 2816332119 Bacteria 8120218
168 Ga0070671_100000001
169 JGI24741J21665_1001140
170 JGI24735J21928_10000227
171 JGI24742J22300_10000011
172 rootH2_10000244
173 Ga0070658_10000012
174 Ga0070658_10000491
175 Ga0070658_10009026
176 Ga0070676_10001822
177 Ga0070683_100000657
178 Ga0070683_100003448
179 Ga0070666_10022729
180 Ga0070680_100011167
181 Ga0070660_100000835
182 Ga0070659_100000558
183 Ga0070667_100000001
184 Ga0070678_100000234
185 Ga0070685_10007581
186 Ga0070679_100000652
187 Ga0070679_100004498
188 Ga0070679_100006231
189 Ga0070684_100003985
190 Ga0068855_100000003
191 Ga0068855_100000211
192 Ga0068857_100000002
193 Ga0068857_100008772
194 Ga0068856_100000001
195 Ga0068856_100010009
196 Ga0068864_100021684
197 Ga0068863_100014649
198 Ga0068860_100005217
199 Ga0081455_10000003
200 Ga0081539_10001746
201 Ga0075365_10000220
202 Ga0075365_10000231
203 Ga0075368_10000191
204 Ga0075363_100000809
205 Ga0075364_10001059
206 Ga0075364_10001104
207 Ga0075367_10001863
208 Ga0075369_10000005
209 Ga0075369_10000056
210 Ga0075366_10000044
211 Ga0075366_10000729
212 Ga0097621_100000370
213 Ga0075370_10008161
214 Ga0068871_100000156
215 Ga0105240_10000003
216 Ga0105240_10000050
217 Ga0105245_10000002
218 Ga0105245_10001369
219 Ga0105243_10000001
220 Ga0105243_10007006
221 Ga0105241_10000003
222 Ga0105242_10003011
223 Ga0105237_10001775
224 Ga0105238_10004439
225 Ga0105249_10000802
226 Ga0105030_100219
227 Ga0157371_10000937
228 Ga0157371_10012136
229 Ga0157369_10056713
230 Ga0157374_10000031
231 Ga0157374_10002560
232 Ga0157372_10003432
233 Ga0157372_10013854
234 Ga0163163_10002375
235 Ga0157376_10000001
236 Ga0207645_10001792
237 Ga0207705_10000056
238 Ga0207705_10001105
239 Ga0207705_10004280
240 Ga0207654_10000002
241 Ga0207707_10005833
242 Ga0207695_10000005
243 Ga0207695_10000158
244 Ga0207695_10015221
245 Ga0207671_10000014
246 Ga0207657_10014671
247 Ga0207652_10001980
248 Ga0207652_10026084
249 Ga0207687_10000001
250 Ga0207687_10011196
251 Ga0207644_10000001
252 Ga0207686_10000001
253 Ga0207686_10002274
254 Ga0207709_10000002
255 Ga0207661_10000021
256 Ga0207667_10000008
257 Ga0207667_10000466
258 Ga0207651_10000191
259 Ga0207658_10000003
260 Ga0207702_10000001
261 Ga0207702_10016312
262 Ga0207641_10025278
263 Ga0207674_10000001
264 Ga0207674_10014079
265 Ga0209813_10000004
266 Ga0268264_10009212
267 Ga0265338_10000066
268 Ga0265338_10000192
269 Ga0265338_10000601
270 Ga0265338_10006957
271 Ga0265338_10008481
272 Ga0265338_10022753
273 Ga0265324_10002604
274 Ga0265340_10000077
275 Ga0265327_10000017
276 Ga0307509_10034951
277 Ga0307516_10000078
278 Ga0373959_0000004
279 Ga0395899_0004533
280 Ga0395899_0005886
281 Ga0395900_0000232
282 Ga0395900_0004371
283 Ga0395900_0011364
284 Ga0395898_0015019
285 Ga0395898_0016139
286 Ga0395905_0000238
287 Ga0395905_0004532
288 Ga0395901_0000680
289 Ga0395901_0006077
290 Ga0395901_0014293
291 Ga0495622_0000082
292 Ga0495588_0000116
293 Ga0495649_0000284
294 Ga0495672_0000129
295 Ga0496113_0021525
296 Ga0501034_0001444
297 Ga0501034_0002719
298 Ga0501047_0000229
299 Ga0501083_0005479
300 Ga0501035_0000033
301 nmdc:mga03683_20_c2
302 nmdc:mga03n38_389_c1
303 nmdc:mga00v17_515_c1
304 nmdc:mga00v17_76_c2
305 nmdc:mga0yw44_212_c1
306 nmdc:mga0yw44_2_c1
307 nmdc:mga0yw44_559_c1
308 nmdc:mga0k408_17_c2
309 nmdc:mga06z11_6_c1
310 nmdc:mga04h51_4_c1
311 nmdc:mga0sz30_1_c1
312 Ga0500610_0000001
313 Ga0500643_000010
314 Ga0500644_0000006
315 Ga0500644_0003715
316 Ga0500646_0000316
317 Ga0500651_0000027
318 Ga0500651_0000045
319 Ga0500566_0000001
320 Ga0500650_0000001
321 Ga0500555_000001
322 Ga0500555_000002
323 Ga0500556_0000295
324 Ga0500562_000002
325 Ga0500594_0000001
326 Ga0500614_000001
327 Ga0500652_000020
328 Ga0500561_0000001
329 Ga0500577_0000107
330 Ga0500579_003193
331 Ga0500589_000016
332 Ga0500616_0000005
333 Ga0500649_000013
334 2816425271

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17657

DNA_pol3_finger

Bacterial DNA polymerase III alpha subunit finger domain

593

758

0.99

PF02811

PHP

PHP domain

16

187

0.95

PF07733

DNA_pol3_alpha

Bacterial DNA polymerase III alpha NTPase domain

313

590

0.95

PF01336

tRNA_anti-codon

OB-fold nucleic acid binding domain

1019

1102

0.94

PF14579

HHH_6

Helix-hairpin-helix motif

831

920

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
2hnh-assembly1.cif.gz_A crystal structure of the catalytic alpha subunit of e. coli replicative dna polymerase iii 0.9025 1 930
2hnh-assembly1.cif.gz_A crystal structure of the catalytic alpha subunit of e. coli replicative dna polymerase iii 0.9006 1 930
4jom-assembly1.cif.gz_A structure of e. coli pol iii 3mphp mutant 0.8842 8 931
4jom-assembly1.cif.gz_A structure of e. coli pol iii 3mphp mutant 0.8806 8 931
4gx9-assembly4.cif.gz_D crystal structure of a dna polymerase iii alpha-epsilon chimera 0.8796 3 287
ID Description Score Start End Superfamily
af_P10443_714_886_1.10.150.870 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1; 0.9421 734 908 1.10.150.870
af_P10443_433_510_1.10.10.1600 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Bacterial DNA polymerase III alpha subunit, thumb domain 0.9326 458 537 1.10.10.1600
af_Q9F1K0_916_986_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.927 1023 1099 2.40.50.140
af_P9WNT7_736_912_1.10.150.870 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1; 0.9249 726 908 1.10.150.870
4iqjC01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.92 9 287 3.20.20.140
ID Description Score Start End GO Terms
AF-A0A3D1E4W2-F1-model_v4 DNA polymerase III subunit alpha 0.9749 570 896 GO:0006260
GO:0008408
AF-K1TFD5-F1-model_v4 DNA polymerase III subunit alpha 0.9723 640 822 GO:0006260
GO:0008408
AF-A0A3S4ID54-F1-model_v4 DNA polymerase III subunit alpha (EC 2.7.7.7) 0.9677 579 822 GO:0003887
GO:0006260
GO:0008408
AF-A0A3D1E4W2-F1-model_v4 DNA polymerase III subunit alpha 0.966 570 896 GO:0006260
GO:0008408
AF-X1VFN3-F1-model_v4 DNA polymerase III alpha subunit finger domain-containing protein 0.9659 597 819 GO:0006260
GO:0008408

Map